BAC Information

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BAC

Clone NameB6Ng01-302C02
Chromosome16 (Build37)
Map Location 35,982,869 - 36,134,753
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302C02.bB6Ng01-302C02.g
ACCGA096262GA096263
length9411,100
definitionB6Ng01-302C02.b B6Ng01-302C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,982,869 - 35,983,808)(36,133,657 - 36,134,753)
sequence
ccattctcctgcctcagacttcctagagctgaaaatacaggcgtgcgtta
ccgtcatgctaggctcaaaaagcgatttaatgttatatgatactaataaa
ttaccgggtaagatgggtgagaactgaagagaatacccagaaagttcctg
caaacgggttgcatgtgaattctttgaacgtgagacactgacgtattttg
taatactccctcagcctccaaccatgccatcattcatccaataagcatgc
tcggctgtgaggtacctaccatgtgagagggaagctatattgatgtgagg
gggaatccgtccattctggaagagcttagtaaggacaagtttgtttccat
aacttctatatgtctgcgcttttactgactgccaacctggtccgcagaga
cccacgccctggccgccgccttttccctggccgccgctagcctagggcgt
ccacgctcggagactccgcttcccggcagcccctgcggcaggcggcggag
aagcgcacgcaggcgcgccggccggcccccgcacgcaggcgcagtgcgca
cgccggctgagctgggtctcgcggctctgtgagcggcagcggagagcgag
gcctggtgagcgccgccgtggtgcgcgccggctggtcaaggttgtgcgca
gaagaggcgcagcgggcgggccaagagcgagcgtctccctcttcgtagtg
gcaccgggaccggtcgcctggagccggtgagtgggggcacctcgcggccc
ctccccctcggcgggcggctctgggtccccctccgcggacccgagggagg
ccccggggcgaatgcggacgcgggcggaagccggagctggctcgggcgcg
ccggggaccggaccctcgcgtcgctcccggtgcgtcacgggcccggcggt
cctaacggccgcgcggcggcggagcggggtgggggtgggga
gaattccttctctctgatacctgcagagctcccccagtgtgctaaggctg
tgcagagggaaaggacaggatagtttcttattttcatcatctaaaaatag
gatggaatacatctttgcctgtctgggggctgtgaagatgaactgagagg
tgggacagaaatcaagggtcttaaaagaccaaagctccttcccagggctt
tcttttatttatttatttttaacttttatttatttgtttatttttgtatg
tgtgtgtgacattgtttcactgagaagctctgactaatatggaaatcact
atgtagatcaggctagccttgaactcagaaaattccatgtacctctgcct
ctcatgtgctgaaattaaaggcaagcaccaccacacctgcccgacaatct
tagaatgttggcatggtttgaatatgcttggcccagtgaatggcactatt
tggaggtgtggccttgttggagtaggtgtgtcacgctgggcatgggcttt
aagaacctcatcctagccaggcagtggtggtgcatacctttaatcccaga
atttgggaggcagaggcagacagatttctgattcgaagccagcctagtct
acacagtgagttccaggacagccaacagccaaggctacacaaagaaaccc
tgtctcaaaaacaaaaaaaaaaaaacaaaacaaaaaaacaaaaaaacaaa
caaacttcatcctagctgcctggaattaagtctcctatcagcttttagat
gaagatacagaactctagatgcgttcatgctcccaccttgatgataatgg
actgaaactccaaacctgtaagccagccccaattaaatgttgtatatgag
ttgacatgggtcatggtgtctgttctttttaactaagacaaatgtcaaca
tctagttctctgtagttgtccatacaataaacacaacaaatacaggatga
accacggcttttttttttttttttaagataggtggtgtcaaagaagcata
tttcaacttttgactcagtgcaaaaatgaatcatacaatgaatgtcatgt
aggggcatgccagaggttaagactcatcttctacttttctaaggtcacac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35982869_35983808
seq2: B6Ng01-302C02.b_54_994

seq1  CCATTCTCCTGCCTCAGACTTCCTAGAGCTGAAAATACAGGCGTGCGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCTGCCTCAGACTTCCTAGAGCTGAAAATACAGGCGTGCGTTA  50

seq1  CCGTCATGCTAGGCTCAAAAAGCGATTTAATGTTATATGATACTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCATGCTAGGCTCAAAAAGCGATTTAATGTTATATGATACTAATAAA  100

seq1  TTACCGGGTAAGATGGGTGAGAACTGAAGAGAATACCCAGAAAGTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGGTAAGATGGGTGAGAACTGAAGAGAATACCCAGAAAGTTCCTG  150

seq1  CAAACGGGTTGCATGTGAATTCTTTGAACGTGAGACACTGACGTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGGGTTGCATGTGAATTCTTTGAACGTGAGACACTGACGTATTTTG  200

seq1  TAATACTCCCTCAGCCTCCAACCATGCCATCATTCATCCAATAAGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTCCCTCAGCCTCCAACCATGCCATCATTCATCCAATAAGCATGC  250

seq1  TCGGCTGTGAGGTACCTACCATGTGAGAGGGAAGCTATATTGATGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGTGAGGTACCTACCATGTGAGAGGGAAGCTATATTGATGTGAGG  300

seq1  GGGAATCCGTCCATTCTGGAAGAGCTTAGTAAGGACAAGTTTGTTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCGTCCATTCTGGAAGAGCTTAGTAAGGACAAGTTTGTTTCCAT  350

seq1  AACTTCTATATGTCTGCGCTTTTACTGACTGCCAACCTGGTCCGCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTATATGTCTGCGCTTTTACTGACTGCCAACCTGGTCCGCAGAGA  400

seq1  CCCACGCCCTGGCCGCCGCCTTTTCCCTGGCCGCCGCTAGCCTAGGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCCCTGGCCGCCGCCTTTTCCCTGGCCGCCGCTAGCCTAGGGCGT  450

seq1  CCACGCTCGGAGACTCCGCTTCCCGGCAGCCCCTGCGGCAGGCGGCGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCGGAGACTCCGCTTCCCGGCAGCCCCTGCGGCAGGCGGCGGAG  500

seq1  AAGCGCACGCAGGCGCGCCGGCCGGCCCCCGCACGCAGGCGCAGTGCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCACGCAGGCGCGCCGGCCGGCCCCCGCACGCAGGCGCAGTGCGCA  550

seq1  CGCCGGCTGAGCTGGGTCTCGCGGCTCTGTGAGCGGCAGCGGAGAGCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGCTGAGCTGGGTCTCGCGGCTCTGTGAGCGGCAGCGGAGAGCGAG  600

seq1  GCCTGGTGAGCGCCGCCGTGGTGCGCGCCGGCTGGTCAAGGTTGTGCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGAGCGCCGCCGTGGTGCGCGCCGGCTGGTCAAGGTTGTGCGCA  650

seq1  GAAGAGGCGCAGCGGGCGGGCCAAGAGCGAGCGTCTCCCTCTTCGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCGCAGCGGGCGGGCCAAGAGCGAGCGTCTCCCTCTTCGTAGTG  700

seq1  GCACCGGGACCGGTCGCCTGGAGCCGGTGAGTGGGGGCACCTCGCGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGGACCGGTCGCCTGGAGCCGGTGAGTGGGGGCACCTCGCGGCCC  750

seq1  CTCCCCCTCGGCGGGCGGCTCTGGGTCCCCCTCCGCGGACCCGAGGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCGGCGGGCGGCTCTGGGTCCCCCTCCGCGGACCCGAGGGAGG  800

seq1  CCCCGGGGCGAAGGCGGACGCGGGCGGAAGCCGGAGCTGGCTCGGGCGCG  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGCGAATGCGGACGCGGGCGGAAGCCGGAGCTGGCTCGGGCGCG  850

seq1  CCGGGGACCGGACCCTCGCGTCGCT-CCGGTGCGTCACGGGCCCGGCGGT  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCGGGGACCGGACCCTCGCGTCGCTCCCGGTGCGTCACGGGCCCGGCGGT  900

seq1  CCTAACGGCCGCGCGGCGGCGGAGCGGGGTGGGGGTGGGGA  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACGGCCGCGCGGCGGCGGAGCGGGGTGGGGGTGGGGA  941

seq1: chr16_36133657_36134753
seq2: B6Ng01-302C02.g_66_1165 (reverse)

seq1  GTGTGAACCTTAG-AAAGTAGAGGATGAGTCTTACCCTCTTGCATGCCCC  49
      ||||| ||||||| |||||||| ||||||||||| ||||| |||||||||
seq2  GTGTG-ACCTTAGAAAAGTAGAAGATGAGTCTTAACCTCTGGCATGCCCC  49

seq1  TACATGACATTCATTGTAATGATTCA-TTTTGCACTGAGTCAAAAGTTTG  98
      ||||||||||||||||| |||||||| ||||||||||||||||||| |||
seq2  TACATGACATTCATTGT-ATGATTCATTTTTGCACTGAGTCAAAAG-TTG  97

seq1  AAATATGCTTCTTTGACA-CACCTATCTT--AAAAAAAAAAAAAGGCCGT  145
      |||||||||||||||||| ||||||||||  ||||||||||||| |||||
seq2  AAATATGCTTCTTTGACACCACCTATCTTAAAAAAAAAAAAAAAAGCCGT  147

seq1  GGTTCATCCTGTATTTGTTGTGTTTATTGTATGGACAACTACAGAGAACT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATCCTGTATTTGTTGTGTTTATTGTATGGACAACTACAGAGAACT  197

seq1  AGATGTTGACATTTGTCTTAGTTAAAAAGAACAGACACCATGA-CCATGT  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATGTTGACATTTGTCTTAGTTAAAAAGAACAGACACCATGACCCATGT  247

seq1  CAACTCATATACAACATTTAATTGGGGCTGGCTTACAGGTTTGGAGTTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATATACAACATTTAATTGGGGCTGGCTTACAGGTTTGGAGTTTC  297

seq1  AGTCCATTATCATCAAGGTGGGAGCATGAACGCATCTAGAGTTCTGTATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTATCATCAAGGTGGGAGCATGAACGCATCTAGAGTTCTGTATC  347

seq1  TTCATCTAAAAGCTGATAGGAGACTTAATTCCAGGCAGCTAGGATGAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAAAAGCTGATAGGAGACTTAATTCCAGGCAGCTAGGATGAAGT  397

seq1  TTGTTTGTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTTTTTGTTTTTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTTTTTGTTTTTGAG  447

seq1  ACAGGGTTTCTTTGTGTAGCCTTGGCTGTTGGCTGTCCTGGAACTCACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTTTGTGTAGCCTTGGCTGTTGGCTGTCCTGGAACTCACTG  497

seq1  TGTAGACTAGGCTGGCTTCGAATCAGAAATCTGTCTGCCTCTGCCTCCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTAGGCTGGCTTCGAATCAGAAATCTGTCTGCCTCTGCCTCCCA  547

seq1  AATTCTGGGATTAAAGGTATGCACCACCACTGCCTGGCTAGGATGAGGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGGATTAAAGGTATGCACCACCACTGCCTGGCTAGGATGAGGTT  597

seq1  CTTAAAGCCCATGCCCAGCGTGACACACCTACTCCAACAAGGCCACACCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCCATGCCCAGCGTGACACACCTACTCCAACAAGGCCACACCT  647

seq1  CCAAATAGTGCCATTCACTGGGCCAAGCATATTCAAACCATGCCAACATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGTGCCATTCACTGGGCCAAGCATATTCAAACCATGCCAACATT  697

seq1  CTAAGATTGTCGGGCAGGTGTGGTGGTGCTTGCCTTTAATTTCAGCACAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTGTCGGGCAGGTGTGGTGGTGCTTGCCTTTAATTTCAGCACAT  747

seq1  GAGAGGCAGAGGTACATGGAATTTTCTGAGTTCAAGGCTAGCCTGATCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGAGGTACATGGAATTTTCTGAGTTCAAGGCTAGCCTGATCTA  797

seq1  CATAGTGATTTCCATATTAGTCAGAGCTTCTCAGTGAAACAATGTCACAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGATTTCCATATTAGTCAGAGCTTCTCAGTGAAACAATGTCACAC  847

seq1  ACACATACAAAAATAAACAAATAAATAAAAGTTAAAAATAAATAAATAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAAAAATAAACAAATAAATAAAAGTTAAAAATAAATAAATAAA  897

seq1  AGAAAGCCCTGGGAAGGAGCTTTGGTCTTTTAAGACCCTTGATTTCTGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCCTGGGAAGGAGCTTTGGTCTTTTAAGACCCTTGATTTCTGTC  947

seq1  CCACCTCTCAGTTCATCTTCACAGCCCCCAGACAGGCAAAGATGTATTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCAGTTCATCTTCACAGCCCCCAGACAGGCAAAGATGTATTCC  997

seq1  ATCCTATTTTTAGATGATGAAAATAAGAAACTATCCTGTCCTTTCCCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTTTAGATGATGAAAATAAGAAACTATCCTGTCCTTTCCCTCT  1047

seq1  GCACAGCCTTAGCACACTGGGGGAGCTCTGCAGGTATCAGAGAGAAGGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCTTAGCACACTGGGGGAGCTCTGCAGGTATCAGAGAGAAGGAA  1097

seq1  TTC  1097
      |||
seq2  TTC  1100