BAC Information

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BAC

Clone NameB6Ng01-302P07
Chromosome16 (Build37)
Map Location 31,044,008 - 31,178,624
singlet/doubletdoublet
Overlap geneAI480653, Centb2
Upstream geneHes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream genePpp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302P07.bB6Ng01-302P07.g
ACCGA096874GA096875
length1,1561,044
definitionB6Ng01-302P07.b B6Ng01-302P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,177,479 - 31,178,624)(31,044,008 - 31,045,044)
sequence
gaattcattatatagaccagactgacttcaaactcagttaccagcctttg
tctgcagagtgatgaaatttaaggcattgtgctaccacacccagtgagta
tgagtacacttacaaacaaacaaactaggcatcctcaagagaagccttgt
aactctttcatctaaatggagaaagcaggtcctcttgagaactgttttaa
taaaggaaaggacctggtgtggtggcacacgcctttaatcccagcattcg
ggagtcagaggcaggcggatttctgagttcgaggccagcctggtctacaa
agtgagttccaggacagccagggctatacagagaaaccctgtctccaaaa
caaacaaacaaacaaacaaacagcaacaacaacaacaacaacaaaggaaa
ggaaaggtcaaacagcctccccgcctcagtctcagggaaatctgtatctg
agagccaactgcagtaacagtttcaagtgagtcctggaaagagtatcaaa
atgccttaaaaaaagagaagaatccagcgatcttctttgtcctgggataa
acattgtaacaaaaatctttccagatggttcatcactgaacacatttgca
tattttaatttattccagatttagtgagattcctcttaaagaaggttata
tttttgatatatgatacctcttctgcagtacagtttttgggaaaatgagc
atgttgacttgtaagacaaatttagtgttggagtttggtcaatagcctgt
gagagtggccagtgaggagtggggccagttccctttcacatcagtgggtc
tgcagctctcctttcctgcgctggtggctctggcagtctgtctgctgtgg
tgcagaaatggctcctgtgtttcctgggatacttagcttgtggagtacaa
tcagaggtgggtgtatattctgaccctatttcctgtatgcctcttactgt
ttgtgttactaggtcctatttatatatatatataaggcagacattataaa
aaaataaagtaagctttttaaaaaaatccagattagataaaaagtgtatt
ataaatggtagaagatgaaaagttcaaaaagaagaggatttgtttaatta
cgtgagagaacagcctgactcgcgattgggtttagatgttgttaaatgaa
ttttgg
gaattctctggatattacgttgagggaaaagaggccactccccaaagatg
atgcacaattcggccggtaaaacacttccacaatgacaagagcctagaac
tcgtaaagtggaacagtgaacaccatgagctgagagattaccaagggaat
acaaaggaaccccttgcccccaccggatccacctctgctaatggaaatgc
cccatgcttgaggaccccaatgtagtcttgcaagatgctaccactggggc
aaaacaggcagagaatctcagtatttcttcttaaaactacacattaatgt
agtattatctcaacagagtaagactcaagagaccctgcttcagctgggca
gtggtggcacacgcctttaatcccagcagttgagaggcagaggcaggtgg
atttctgactttgaggccagcctggtctacagagtgagttccaggacagc
cagggctatacagagaaaccctgtctcaaaaaaccaaaacccaaaccaca
caaacaaacaaacaaacaaacaaacaaaaaaagaccctgcttcagtccag
ctcagctggatgcctctggccataagctatatataatcagtttcaaccat
gactaaatgaggacccaagctcatcagcctgctgattgttaccctcagat
gctctctggccattgaccagaaacaccagttctcagcaccttccctgaca
gagcctttcatcacacagcatctgggttcttccacgtcaactgctccaag
ggagaaacaagagagcccaggctggaagcctttggtcttctatgataacc
agggagatgatgtgctgctactcctgtcatagtcatcagacctgaaccaa
gaagcccagctcaacacaaaggaaagggatgtcaccaggggccaaataca
gggatgaagatcacaggggctatctcagaggctcctcgggcagccccctt
cctccctcttctccttatagttatctgtataaaacgtctaaccactctcc
actagaaatgggacgtcatggagggcaagccatatcccggtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31177479_31178624
seq2: B6Ng01-302P07.b_45_1200 (reverse)

seq1  CCAAAA-TCATT--ACAACATCTAAAACCCAATCGCCGAGTCA-GCTG-T  45
      |||||| |||||  ||||||||| ||||||||||| ||||||| |||| |
seq2  CCAAAATTCATTTAACAACATCT-AAACCCAATCG-CGAGTCAGGCTGTT  48

seq1  CTCTCACGTATTT--ACCAATCCTCTTCTTTTTG-ACTTTTCATTCTCTA  92
      |||||||||| ||  || |||||||||||||||| |||||||||  ||||
seq2  CTCTCACGTAATTAAACAAATCCTCTTCTTTTTGAACTTTTCATCTTCTA  98

seq1  -CATTTAT-ATACACTTTTTATCTATTCTGGATTTTTTTAAAAAGCTTAC  140
       ||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  CCATTTATAATACACTTTTTATCTAATCTGGATTTTTTTAAAAAGCTTAC  148

seq1  TTTATTTTTTTATTATGTCTGCCTTATATATATATATAATTA-GACCTAG  189
      ||||||||||||| ||||||||||||||||||||||||| || |||||||
seq2  TTTATTTTTTTATAATGTCTGCCTTATATATATATATAAATAGGACCTAG  198

seq1  TTAACACAAACAGTAAGAGGCATACAGG-AATAGGGTCAGAATATACACC  238
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  -TAACACAAACAGTAAGAGGCATACAGGAAATAGGGTCAGAATATACACC  247

seq1  CACCTCTGATTGTACTCCACAAGCTAAGTATCCCAGG-AACACAGGAGCC  287
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACCTCTGATTGTACTCCACAAGCTAAGTATCCCAGGAAACACAGGAGCC  297

seq1  ATTTCTGCACCACAGCAGACAGACTGCCAGAGCCACCAGCGCAGGAAAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCACCACAGCAGACAGACTGCCAGAGCCACCAGCGCAGGAAAGG  347

seq1  AGAGCTGCAGACCCACTGATGTGAAAGGGAACTGGCCCCACTCCTCACTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCAGACCCACTGATGTGAAAGGGAACTGGCCCCACTCCTCACTG  397

seq1  GCCACTCTCACAGGCTATTGACCAAACTCCAACACTAAATTTGTCTTACA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTCACAGGCTATTGACCAAACTCCAACACTAAATTTGTCTTACA  447

seq1  AGTCAACATGCTCATTTTCCCAAAAACTGTACTGCAGAAGAGGTATCATA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATGCTCATTTTCCCAAAAACTGTACTGCAGAAGAGGTATCATA  497

seq1  TATCAAAAATATAACCTTCTTTAAGAGGAATCTCACTAAATCTGGAATAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAATATAACCTTCTTTAAGAGGAATCTCACTAAATCTGGAATAA  547

seq1  ATTAAAATATGCAAATGTGTTCAGTGATGAACCATCTGGAAAGATTTTTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATGCAAATGTGTTCAGTGATGAACCATCTGGAAAGATTTTTG  597

seq1  TTACAATGTTTATCCCAGGACAAAGAAGATCGCTGGATTCTTCTCTTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGTTTATCCCAGGACAAAGAAGATCGCTGGATTCTTCTCTTTTT  647

seq1  TTAAGGCATTTTGATACTCTTTCCAGGACTCACTTGAAACTGTTACTGCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCATTTTGATACTCTTTCCAGGACTCACTTGAAACTGTTACTGCA  697

seq1  GTTGGCTCTCAGATACAGATTTCCCTGAGACTGAGGCGGGGAGGCTGTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCTCAGATACAGATTTCCCTGAGACTGAGGCGGGGAGGCTGTTT  747

seq1  GACCTTTCCTTTCCTTTGTTGTTGTTGTTGTTGTTGCTGTTTGTTTGTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCCTTTCCTTTGTTGTTGTTGTTGTTGTTGCTGTTTGTTTGTTT  797

seq1  GTTTGTTTGTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  847

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  897

seq1  TCTGACTCCCGAATGCTGGGATTAAAGGCGTGTGCCACCACACCAGGTCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCCGAATGCTGGGATTAAAGGCGTGTGCCACCACACCAGGTCC  947

seq1  TTTCCTTTATTAAAACAGTTCTCAAGAGGACCTGCTTTCTCCATTTAGAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTATTAAAACAGTTCTCAAGAGGACCTGCTTTCTCCATTTAGAT  997

seq1  GAAAGAGTTACAAGGCTTCTCTTGAGGATGCCTAGTTTGTTTGTTTGTAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTACAAGGCTTCTCTTGAGGATGCCTAGTTTGTTTGTTTGTAA  1047

seq1  GTGTACTCATACTCACTGGGTGTGGTAGCACAATGCCTTAAATTTCATCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCATACTCACTGGGTGTGGTAGCACAATGCCTTAAATTTCATCA  1097

seq1  CTCTGCAGACAAAGGCTGGTAACTGAGTTTGAAGTCAGTCTGGTCTATAT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGACAAAGGCTGGTAACTGAGTTTGAAGTCAGTCTGGTCTATAT  1147

seq1  AATGAATTC  1146
      |||||||||
seq2  AATGAATTC  1156

seq1: chr16_31044008_31045044
seq2: B6Ng01-302P07.g_69_1112

seq1  GAATTCTCTGGATATTACGTTGAGGGAAAAGAGGCCACTCCCCAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATATTACGTTGAGGGAAAAGAGGCCACTCCCCAAAGATG  50

seq1  ATGCACAATTCGGCCGGTAAAACACTTCCACAATGACAAGAGCCTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAATTCGGCCGGTAAAACACTTCCACAATGACAAGAGCCTAGAAC  100

seq1  TCGTAAAGTGGAACAGTGAACACCATGAGCTGAGAGATTACCAAGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAAGTGGAACAGTGAACACCATGAGCTGAGAGATTACCAAGGGAAT  150

seq1  ACAAAGGAACCCCTTGCCCCCACCGGATCCACCTCTGCTAATGGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAACCCCTTGCCCCCACCGGATCCACCTCTGCTAATGGAAATGC  200

seq1  CCCATGCTTGAGGACCCCAATGTAGTCTTGCAAGATGCTACCACTGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTTGAGGACCCCAATGTAGTCTTGCAAGATGCTACCACTGGGGC  250

seq1  AAAACAGGCAGAGAATCTCAGTATTTCTTCTTAAAACTACACATTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCAGAGAATCTCAGTATTTCTTCTTAAAACTACACATTAATGT  300

seq1  AGTATTATCTCAACAGAGTAAGACTCAAGAGACCCTGCTTCAGCTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATCTCAACAGAGTAAGACTCAAGAGACCCTGCTTCAGCTGGGCA  350

seq1  GTGGTGGCACACGCCTTTAATCCCAGCAGTTGAGAGGCAGAGGCAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCACACGCCTTTAATCCCAGCAGTTGAGAGGCAGAGGCAGGTGG  400

seq1  ATTTCTGACTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  450

seq1  CAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAACCCAAACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAACCCAAACCACA  500

seq1  CAAACAAACAAACAAACAAACAAACAAAAAAAGACCCTGCTTCAGTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACAAAAAAAGACCCTGCTTCAGTCCAG  550

seq1  CTCAGCTGGATGCCTCTGGCCATAAGCTATATATAATCAGTTTCAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGGATGCCTCTGGCCATAAGCTATATATAATCAGTTTCAACCAT  600

seq1  GACTAAATGAGGACCCAAGCTCATCAGCCTGCTGATTGTTACCCTCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATGAGGACCCAAGCTCATCAGCCTGCTGATTGTTACCCTCAGAT  650

seq1  GCTCTCTGGCCATTGACCAGAAACACCAGTTCTCAGCACCTTCCCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGGCCATTGACCAGAAACACCAGTTCTCAGCACCTTCCCTGACA  700

seq1  GAGCCTTTCATCACACAGCATCTGGGTTCTTCCACGTCAACTGCTCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTCATCACACAGCATCTGGGTTCTTCCACGTCAACTGCTCCAAG  750

seq1  GGAGAAACAAGAGAGCCCAGGCTGGAAGCC-TTGGTCTTCTATGATAACC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGAAACAAGAGAGCCCAGGCTGGAAGCCTTTGGTCTTCTATGATAACC  800

seq1  AGGGAGATGATGTGCTGCTACTCCTGTCATAGTCATCAGACCTGAACCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGATGTGCTGCTACTCCTGTCATAGTCATCAGACCTGAACCAA  850

seq1  GAAGCCCAGCTCAACACAAAGGAAAGGGATGTCACCAGGGGCCAAATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAGCTCAACACAAAGGAAAGGGATGTCACCAGGGGCCAAATACA  900

seq1  GGGATGAAGATCACAGGGGCTATCTCAGAGGCTCCTCGGGCAGCCCCC-T  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGATGAAGATCACAGGGGCTATCTCAGAGGCTCCTCGGGCAGCCCCCTT  950

seq1  CCTCCCTC-TCTCCTTATAGTTATCTGTAT-AAACGTCTAA-CACTCT-C  994
      |||||||| ||||||||||||||||||||| |||||||||| |||||| |
seq2  CCTCCCTCTTCTCCTTATAGTTATCTGTATAAAACGTCTAACCACTCTCC  1000

seq1  ACTAGAAAT-GGACGTCAT-GAGGGCAAAGCCCATAT-CCGGTCCA  1037
      ||||||||| ||||||||| ||||||||   |||||| ||||||||
seq2  ACTAGAAATGGGACGTCATGGAGGGCAA--GCCATATCCCGGTCCA  1044