BAC Information

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BAC

Clone NameB6Ng01-304C20
Chromosome16 (Build37)
Map Location 45,757,905 - 45,888,117
singlet/doubletdoublet
Overlap genePhldb2
Upstream geneCd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10
Downstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304C20.bB6Ng01-304C20.g
ACCGA097797GA097798
length1,1501,140
definitionB6Ng01-304C20.b B6Ng01-304C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,757,905 - 45,759,041)(45,886,979 - 45,888,117)
sequence
gaattcataaagaaatatcattcttccctaatccttcaaaaaaccgtcca
ctggttatcacagggggagggaaggcagtagagagcagccgtttcagtct
gtgtgaaacccgggcccacgcttcaagttccaaggcaccgaagtgcagta
aagggctttgggcgccaattctttagcacctttgcttttgggaaaggaaa
ggaggctgagcagctcccaaggtcacagcactcagcaaggcccccgaaag
aaggctgctggcaagggtagggccccttgccaccactgtccatcccagac
tcctggcaggagtggacactcttaccctggactcaagcagccgagtcttc
tccgcgtgcgcctgtttcaagagtctctccatttcttctattctggcaat
attggatgtgctggcactgaagcaaataaagagcctgttaagaatatttg
ctgagggagaggagtcggggaggatgagtgggatcaaagatacattgtgt
gcatgggtgagattctcaaagaattaataaaaaatatatttaaaaaacac
ctcataacctgaccagactcacacaccaaagttacaagttacaatcaaat
cacacacacacacacacacacgcacacgcacacgcacaggcacacacaca
cacactgcacacacacacacacacacacacacacacacacacacacaggt
caagtttaatgtcacaatcaaagtatatacaatttgaaagatactcttca
tgagtcatttggtcttttgggggctaatcaactcatctctaaaaaccata
gctgactcaatatttatctcagtgtagaaaccaaaaagaggcacacaaag
accagggcagtgcacactggctagaaaacccataagataaaggtaagtca
gcaggtgtccaaaatgcagcctccaggtctaacactgacagccattcaag
ccttcttcttcagtcaccgcctctcactagccgtcacactgtgacactct
aggtaaatgaatacatcctgaagtctgtctttcagttgggcaatttggtc
ccctttaccatgtgtgggcatctgactttttttaaaatgaacactaatgt
gagtgactttgagttaataagggtgcactggagttagtggtgttcagttt

gaattccagtccataggtcttctatgtcctgtgtgcctaatttgaatact
tgggaagaagagacaggaggatcaggaatttaaagtcatgctggttacag
tgtgttgaaggctgatcttgtctatataagaccttatctcaaaagaaaag
aaaacaaataatgaaatctatacgataaagaccctacctggacccattta
accttgagtactctttaaaaactgtatcttcaaacttggccactgtggag
aacagaacttcaaaatgtgaattaggagaaatactctctcagttcatagc
agtgagacaggaagccacacatatggtccttgcagtggttttaaatatgc
ttggcctattgggcgtggtgctgttaggaggtggggccttattggatgtt
gtgtagccttgtttgactaagtgtgtcactgtggaggtggagcattgaag
tctcacatatgtgttcaaatctggccattgtgatctagaccctcctcctg
gctgcctgcggacgacactcttccctaggctgcctttggatcacgatgta
gaactctcagctccttctctagcaccatgtctgcctgtatgctgctgggc
ttcctgccatgatgataatggactgaacctctgaaactgtaagcccgccc
caattaaatgttttcttagtcatggtgtctcttcaagggataaaacccta
actaagacaatccccaaattcaacagttagttttattctttaaaaataat
atcttagggtttctgttgctctgatgaaataccgtgagcaaaagcaagtt
ggggtggaaagggtttatttggcttaattttttatcacggaaggaagtca
gacaggaactcaaacctggaggctagaatggagggatgctggttactggc
ctgctcagcctgctttttttcttttagaaccaggactacccaccccagaa
tagcattaccttacatggctggcccagcccaattcaatccactagtttaa
gaaaatgcctacagatcttaagagccatttactcagcctgagctccctcc
tcttctgatgaatccacatgcacacccttaggaaacctatagtgccttta
agagcagcctggattcaaatgtgacttgtgccagacaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45757905_45759041
seq2: B6Ng01-304C20.b_43_1192

seq1  GAATTCATAAAGAAATATCATTCTTCCCTAATCCTTCAAAAAACCGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGAAATATCATTCTTCCCTAATCCTTCAAAAAACCGTCCA  50

seq1  CTGGTTATCACAGGGGGAGGGAAGGCAGTAGAGAGCAGCCGTTTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATCACAGGGGGAGGGAAGGCAGTAGAGAGCAGCCGTTTCAGTCT  100

seq1  GTGTGAAACCCGGGCCCACGCTTCAAGTTCCAAGGCACCGAAGTGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAACCCGGGCCCACGCTTCAAGTTCCAAGGCACCGAAGTGCAGTA  150

seq1  AAGGGCTTTGGGCGCCAATTCTTTAGCACCTTTGCTTTTGGGAAAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTGGGCGCCAATTCTTTAGCACCTTTGCTTTTGGGAAAGGAAA  200

seq1  GGAGGCTGAGCAGCTCCCAAGGTCACAGCACTCAGCAAGGCCCCCGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAGCAGCTCCCAAGGTCACAGCACTCAGCAAGGCCCCCGAAAG  250

seq1  AAGGCTGCTGGCAAGGGTAGGGCCCCTTGCCACCACTGTCCATCCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTGGCAAGGGTAGGGCCCCTTGCCACCACTGTCCATCCCAGAC  300

seq1  TCCTGGCAGGAGTGGACACTCTTACCCTGGACTCAAGCAGCCGAGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGGAGTGGACACTCTTACCCTGGACTCAAGCAGCCGAGTCTTC  350

seq1  TCCGCGTGCGCCTGTTTCAAGAGTCTCTCCATTTCTTCTATTCTGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGTGCGCCTGTTTCAAGAGTCTCTCCATTTCTTCTATTCTGGCAAT  400

seq1  ATTGGATGTGCTGGCACTGAAGCAAATAAAGAGCCTGTTAAGAATATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGTGCTGGCACTGAAGCAAATAAAGAGCCTGTTAAGAATATTTG  450

seq1  CTGAGGGAGAGGAGTCGGGGAGGATGAGTGGGATCAAAGATACATTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAGAGGAGTCGGGGAGGATGAGTGGGATCAAAGATACATTGTGT  500

seq1  GCATGGGTGAGATTCTCAAAGAATTAATAAAAAATATATTTAAAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGAGATTCTCAAAGAATTAATAAAAAATATATTTAAAAAACAC  550

seq1  CTCATAACCTGACCAGACTCACACACCAAAGTTACAAGTTACAATCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACCTGACCAGACTCACACACCAAAGTTACAAGTTACAATCAAAT  600

seq1  CACACACACACACACACACACGCACACGCACACGCACAGGCACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGCACACGCACACGCACAGGCACACACACA  650

seq1  CACACTGCACACACACACACACACACACACACACACACACACACACAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCACACACACACACACACACACACACACACACACACACACAGGT  700

seq1  CAAGTTTAATGTCACAATCAAAGTATATACAATTTGAAAGATACTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAATGTCACAATCAAAGTATATACAATTTGAAAGATACTCTTCA  750

seq1  TGAGTCATTTGGTCTTTTGGGGGCTAATCAACTCATCTCTAAAAACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATTTGGTCTTTTGGGGGCTAATCAACTCATCTCTAAAAACCATA  800

seq1  GCTGACTCAATATTTATCTCAGTGTAGAAACCAAAAAGAGGCACACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCAATATTTATCTCAGTGTAGAAACCAAAAAGAGGCACACAAAG  850

seq1  ACCAGGGCAGTGCACACTGGCTAG-AAACCCATAAGATAAAGGTAAGTCA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCAGGGCAGTGCACACTGGCTAGAAAACCCATAAGATAAAGGTAAGTCA  900

seq1  GCAGGTGTCCAAAATGCAGCCTCCAGGTCTAACACTGACAGCCATTCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTCCAAAATGCAGCCTCCAGGTCTAACACTGACAGCCATTCAAG  950

seq1  CCTTC-TCTTCAGTCACCGCCTCTCAACTAGCCGTCACACTGTGACACTC  998
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTTCTTCTTCAGTCACCGCCTCTC-ACTAGCCGTCACACTGTGACACTC  999

seq1  TAGGTAAATG-ATACAT-CTGAAGTCTGTC-TTCAGTTGGGCAATTTG--  1043
      |||||||||| |||||| |||||||||||| |||||||||||||||||  
seq2  TAGGTAAATGAATACATCCTGAAGTCTGTCTTTCAGTTGGGCAATTTGGT  1049

seq1  TCCCTTTA-CATGTGTGGGCATCTGACTTTTTT--AAATG-ACACTAATG  1089
       ||||||| ||||||||||||||||||||||||  ||||| |||||||||
seq2  CCCCTTTACCATGTGTGGGCATCTGACTTTTTTTAAAATGAACACTAATG  1099

seq1  TTGAAGTGAC-TTGAG-TAATA--GGTGCACT-GAGTAAGTGGTGGTCAG  1134
      |   |||||| ||||| |||||  |||||||| |||| ||||||| ||||
seq2  T--GAGTGACTTTGAGTTAATAAGGGTGCACTGGAGTTAGTGGTGTTCAG  1147

seq1  TTT  1137
      |||
seq2  TTT  1150

seq1: chr16_45886979_45888117
seq2: B6Ng01-304C20.g_68_1207 (reverse)

seq1  TCTTGTCTTGCACCAAGGGTCACATTTGAATCCA-GCTGCTCTTAAAGGC  49
      |||||||| |||| |   |||||||||||||||| |||||||||||||||
seq2  TCTTGTCTGGCACAA---GTCACATTTGAATCCAGGCTGCTCTTAAAGGC  47

seq1  ACTATAGGTTTCCT-AGGGTGTGCATGT-GAATCATCAG-AGAGGAGGGA  96
      |||||||||||||| ||||||||||||| || ||||||| ||||||||||
seq2  ACTATAGGTTTCCTAAGGGTGTGCATGTGGATTCATCAGAAGAGGAGGGA  97

seq1  GCTTCAGCTGAGTAAATGCCTCCTTAAGATCTGTAGGCATTTTCTT-AAC  145
      |||   |||||||||||| || |||||||||||||||||||||||| |||
seq2  GCTCAGGCTGAGTAAATGGCT-CTTAAGATCTGTAGGCATTTTCTTAAAC  146

seq1  TAGT-GATTG-ATTGGGCTGGGCCCAGCCCATTGTAGGTAATGCTATTCT  193
      |||| ||||| ||||||||||| |||| ||||   |||||||||||||||
seq2  TAGTGGATTGAATTGGGCTGGG-CCAG-CCATGTAAGGTAATGCTATTCT  194

seq1  GGGGTTGGTAGTCCTGGTTCTAAAAG-AAAAAAGCAGGCTGAGCAAGCCA  242
      ||||| |||||||||||||||||||| |||||||||||||||||| ||||
seq2  GGGGTGGGTAGTCCTGGTTCTAAAAGAAAAAAAGCAGGCTGAGCAGGCCA  244

seq1  GTAACCAGCATCCCTCCATTCTAGCCTCCAGGTTTGAGTTCCTGTCCTGA  292
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAACCAGCATCCCTCCATTCTAGCCTCCAGGTTTGAGTTCCTGT-CTGA  293

seq1  CTTCCTTCCGTGATAAAAAATTAAGCCAAATAAACCCTTTCCACCCCAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCGTGATAAAAAATTAAGCCAAATAAACCCTTTCCACCCCAAC  343

seq1  TTGCTTTTGCTCACGGTATTTCATCAGAGCAACAGAAACCCTAAGATATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGCTCACGGTATTTCATCAGAGCAACAGAAACCCTAAGATATT  393

seq1  ATTTTTAAAGAATAAAACTAACTGTTGAATTTGGGGATTGTCTTAGTTAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGAATAAAACTAACTGTTGAATTTGGGGATTGTCTTAGTTAG  443

seq1  GGTTTTATCCCTTGAAGAGACACCATGACTAAGAAAACATTTAATTGGGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATCCCTTGAAGAGACACCATGACTAAGAAAACATTTAATTGGGG  493

seq1  CGGGCTTACAGTTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTACAGTTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGCC  543

seq1  CAGCAGCATACAGGCAGACATGGTGCTAGAGAAGGAGCTGAGAGTTCTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATACAGGCAGACATGGTGCTAGAGAAGGAGCTGAGAGTTCTAC  593

seq1  ATCGTGATCCAAAGGCAGCCTAGGGAAGAGTGTCGTCCGCAGGCAGCCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGATCCAAAGGCAGCCTAGGGAAGAGTGTCGTCCGCAGGCAGCCAG  643

seq1  GAGGAGGGTCTAGATCACAATGGCCAGATTTGAACACATATGTGAGACTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTCTAGATCACAATGGCCAGATTTGAACACATATGTGAGACTT  693

seq1  CAATGCTCCACCTCCACAGTGACACACTTAGTCAAACAAGGCTACACAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCCACCTCCACAGTGACACACTTAGTCAAACAAGGCTACACAAC  743

seq1  ATCCAATAAGGCCCCACCTCCTAACAGCACCACGCCCAATAGGCCAAGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAAGGCCCCACCTCCTAACAGCACCACGCCCAATAGGCCAAGCA  793

seq1  TATTTAAAACCACTGCAAGGACCATATGTGTGGCTTCCTGTCTCACTGCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACCACTGCAAGGACCATATGTGTGGCTTCCTGTCTCACTGCT  843

seq1  ATGAACTGAGAGAGTATTTCTCCTAATTCACATTTTGAAGTTCTGTTCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGAGAGAGTATTTCTCCTAATTCACATTTTGAAGTTCTGTTCTC  893

seq1  CACAGTGGCCAAGTTTGAAGATACAGTTTTTAAAGAGTACTCAAGGTTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGCCAAGTTTGAAGATACAGTTTTTAAAGAGTACTCAAGGTTAA  943

seq1  ATGGGTCCAGGTAGGGTCTTTATCGTATAGATTTCATTATTTGTTTTCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCAGGTAGGGTCTTTATCGTATAGATTTCATTATTTGTTTTCTT  993

seq1  TTCTTTTGAGATAAGGTCTTATATAGACAAGATCAGCCTTCAACACACTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAGATAAGGTCTTATATAGACAAGATCAGCCTTCAACACACTG  1043

seq1  TAACCAGCATGACTTTAAATTCCTGATCCTCCTGTCTCTTCTTCCCAAGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCATGACTTTAAATTCCTGATCCTCCTGTCTCTTCTTCCCAAGT  1093

seq1  ATTCAAATTAGGCACACAGGACATAGAAGACCTATGGACTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTAGGCACACAGGACATAGAAGACCTATGGACTGGAATTC  1140