BAC Information

Click to search

BAC

Clone NameB6Ng01-304E24
Chromosome16 (Build37)
Map Location 76,852,804 - 76,971,702
singlet/doubletdoublet
Overlap geneLOC665120
Upstream geneSamsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
Downstream geneUsp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304E24.bB6Ng01-304E24.g
ACCGA097901GA097902
length1,149516
definitionB6Ng01-304E24.b B6Ng01-304E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,970,550 - 76,971,702)(76,852,804 - 76,853,319)
sequence
gaattcaattgtgctcaggtcaggtcaggtcaggtcaggtcaggtcaggt
cagtgcagtttcaagcagtagagaagccagtttgaatcagtctgctttgg
agaggagttggaggcagagcagctgagtcgaaccagccagccagagttca
gaaataacgagaaagggtgagcatattcagcattaagtctccacaatggc
aattatatctggcaaataaaagatatatttacaccgacacataatttaat
caatttaatttatggagtatttactacttactatctagaagaactgcatg
ctactcttatgtgaaggaaatgagtcagaatgtttatatttaatgagata
attttaagtcggtgaaatattacctgtctctagattttaaaatattgtct
ttgtgtcatcgtctccaaatggggtttctcattttagtgttggaaagtta
acagtttgtacaaagatttaaataatttcaggatggaactatagaaagca
gaagaaatgtaaaacataccacctatatgtgtgataataaggtgaaatgt
tttcaaaggaacaaaaatatgtagcagtgagattagtgtgggggaaactc
atcatcatatcatgttgacttacttgattggaaagcaaagttgggggacg
ctacaacaaatcctcaagttctttattgctccaaccctctctcaaatcta
acttaagaatatattcagtaccatgttcagtaaggttaaaatgtaggact
actaattggaaaaaaataaaaaaacctctcagagtcaaatgctagtaata
ccccaaatgtgtcatagatgtgtgagtgaaaaggaaataacaacagtaaa
aggatgaattatagatcactctagagttaacagagtaattttatttgcag
ctgtgtgaaagtttccagggcaggctaattttgtggtcgactatcccaag
ctatttctataaaaaataaaagaaccataaataaaacgtaaagcagagaa
gggtcattaaaatcatgattagtttaagaaagattcttacattatataaa
tttagagaatataattttatgttttctatctcctaggtattgaacactta
ttgatcatgaaaaacacattctttgaggtgaataatgttttaaacttac

gaattcaaatacaaagctctgttcattctatgattctagaagatacatac
acgatgcattcagatgtctggttttgatttttttttaacaacattcaatc
agattatggttcccaagggagaaagtaagataacagcctggagagatgcc
tcagctaggagatgcttgctgcataagcagagtcataagcctcgatcctc
aacactctcctaaaaagtgtcagagcagcacatccctagagccccattgc
tgtagaggatggaacaggccagatccgtggggcttgaagacaactccaac
caactggcagcctcagaatcagtgagagaccctgcttcaaaacaatacag
aggggaagtattgagtgggagacctgatgtcaacattggtaccctataaa
ctaccaacacacacacacacacacacacacacacacacacacacacattc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76970550_76971702
seq2: B6Ng01-304E24.b_46_1194 (reverse)

seq1  GTAATTTTAAAACATTTTATTCA-CTCAAAG-ATGTGTTTTTCATGATCA  48
      |||| |||||||||  ||||||| ||||||| ||||||||||||||||||
seq2  GTAAGTTTAAAACA--TTATTCACCTCAAAGAATGTGTTTTTCATGATCA  48

seq1  ATAAAGTGTTAAATACTAAGGAGATAGAAAACATAAAATTATA-TCTCTA  97
      || ||||||| |||||  ||||||||||||||||||||||||| ||||||
seq2  AT-AAGTGTTCAATACCTAGGAGATAGAAAACATAAAATTATATTCTCTA  97

seq1  AATTTATATAATTGTAGAATCCTTTCTTAAACTAATCATGATTTTTAATG  147
      ||||||||||||   ||||| |||||||||||||||||||| ||||||||
seq2  AATTTATATAATGTAAGAAT-CTTTCTTAAACTAATCATGA-TTTTAATG  145

seq1  GCCCTTTCTCTGCTTTACGTTTTTATTTATGGTTCTTTTATTTTTTATAG  197
       ||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCC-TTCTCTGCTTTACG-TTTTATTTATGGTTCTTTTATTTTTTATAG  193

seq1  AAATAGCTTGGGATAGTCGACCACAAAATTAGCCTGCCCTGGAAACTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTGGGATAGTCGACCACAAAATTAGCCTGCCCTGGAAACTTTC  243

seq1  ACACAGCTGCAAATAAAATTACTCTGTTAACTCTAGAGTGATCTATAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGCAAATAAAATTACTCTGTTAACTCTAGAGTGATCTATAATT  293

seq1  CATCCTTTTACTGTTGTTATTTCCTTTTCACTCACACATCTATGACACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTACTGTTGTTATTTCCTTTTCACTCACACATCTATGACACAT  343

seq1  TTGGGGTATTACTAGCATTTGACTCTGAGAGGTTTTTTTATTTTTTTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTATTACTAGCATTTGACTCTGAGAGGTTTTTTTATTTTTTTCCA  393

seq1  ATTAGTAGTCCTACATTTTAACCTTACTGAACATGGTACTGAATATATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGTCCTACATTTTAACCTTACTGAACATGGTACTGAATATATTC  443

seq1  TTAAGTTAGATTTGAGAGAGGGTTGGAGCAATAAAGAACTTGAGGATTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAGATTTGAGAGAGGGTTGGAGCAATAAAGAACTTGAGGATTTG  493

seq1  TTGTAGCGTCCCCCAACTTTGCTTTCCAATCAAGTAAGTCAACATGATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCGTCCCCCAACTTTGCTTTCCAATCAAGTAAGTCAACATGATAT  543

seq1  GATGATGAGTTTCCCCCACACTAATCTCACTGCTACATATTTTTGTTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGAGTTTCCCCCACACTAATCTCACTGCTACATATTTTTGTTCCT  593

seq1  TTGAAAACATTTCACCTTATTATCACACATATAGGTGGTATGTTTTACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACATTTCACCTTATTATCACACATATAGGTGGTATGTTTTACAT  643

seq1  TTCTTCTGCTTTCTATAGTTCCATCCTGAAATTATTTAAATCTTTGTACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGCTTTCTATAGTTCCATCCTGAAATTATTTAAATCTTTGTACA  693

seq1  AACTGTTAACTTTCCAACACTAAAATGAGAAACCCCATTTGGAGACGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAACTTTCCAACACTAAAATGAGAAACCCCATTTGGAGACGATG  743

seq1  ACACAAAGACAATATTTTAAAATCTAGAGACAGGTAATATTTCACCGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGACAATATTTTAAAATCTAGAGACAGGTAATATTTCACCGACT  793

seq1  TAAAATTATCTCATTAAATATAAACATTCTGACTCATTTCCTTCACATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATCTCATTAAATATAAACATTCTGACTCATTTCCTTCACATAA  843

seq1  GAGTAGCATGCAGTTCTTCTAGATAGTAAGTAGTAAATACTCCATAAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCATGCAGTTCTTCTAGATAGTAAGTAGTAAATACTCCATAAATT  893

seq1  AAATTGATTAAATTATGTGTCGGTGTAAATATATCTTTTATTTGCCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTAAATTATGTGTCGGTGTAAATATATCTTTTATTTGCCAGAT  943

seq1  ATAATTGCCATTGTGGAGACTTAATGCTGAATATGCTCACCCTTTCTCGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCCATTGTGGAGACTTAATGCTGAATATGCTCACCCTTTCTCGT  993

seq1  TATTTCTGAACTCTGGCTGGCTGGTTCGACTCAGCTGCTCTGCCTCCAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGAACTCTGGCTGGCTGGTTCGACTCAGCTGCTCTGCCTCCAAC  1043

seq1  TCCTCTCCAAAGCAGACTGATTCAAACTGGCTTCTCTACTGCTTGAAACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCAAAGCAGACTGATTCAAACTGGCTTCTCTACTGCTTGAAACT  1093

seq1  GCACTGACCTGACCTGACCTGACCTGACCTGACCTGACCTGAGCACAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACCTGACCTGACCTGACCTGACCTGACCTGACCTGAGCACAATT  1143

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1149


seq1: chr16_76852804_76853319
seq2: B6Ng01-304E24.g_67_582

seq1  GAATTCAAATACAAAGCTCTGTTCATTCTATGATTCTAGAAGATACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACAAAGCTCTGTTCATTCTATGATTCTAGAAGATACATAC  50

seq1  ACGATGCATTCAGATGTCTGGTTTTGATTTTTTTTTAACAACATTCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCATTCAGATGTCTGGTTTTGATTTTTTTTTAACAACATTCAATC  100

seq1  AGATTATGGTTCCCAAGGGAGAAAGTAAGATAACAGCCTGGAGAGATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGGTTCCCAAGGGAGAAAGTAAGATAACAGCCTGGAGAGATGCC  150

seq1  TCAGCTAGGAGATGCTTGCTGCATAAGCAGAGTCATAAGCCTCGATCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGAGATGCTTGCTGCATAAGCAGAGTCATAAGCCTCGATCCTC  200

seq1  AACACTCTCCTAAAAAGTGTCAGAGCAGCACATCCCTAGAGCCCCATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTCCTAAAAAGTGTCAGAGCAGCACATCCCTAGAGCCCCATTGC  250

seq1  TGTAGAGGATGGAACAGGCCAGATCCGTGGGGCTTGAAGACAACTCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGATGGAACAGGCCAGATCCGTGGGGCTTGAAGACAACTCCAAC  300

seq1  CAACTGGCAGCCTCAGAATCAGTGAGAGACCCTGCTTCAAAACAATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCAGCCTCAGAATCAGTGAGAGACCCTGCTTCAAAACAATACAG  350

seq1  AGGGGAAGTATTGAGTGGGAGACCTGATGTCAACATTGGTACCCTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGTATTGAGTGGGAGACCTGATGTCAACATTGGTACCCTATAAA  400

seq1  CTACCAACACACACACACACACACACACACACACACACACACACACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACACACACACACACACACACACACACACACACACACACACATTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTCTCTCTC  516
      ||||||||||||||||
seq2  TCTCTCTCTCTCTCTC  516


| Home | SequenceCutter | Blast | Download |