BAC Information

Click to search

BAC

Clone NameB6Ng01-305J06
Chromosome16 (Build37)
Map Location 59,109,649 - 59,110,795
singlet/doubletsinglet
Overlap geneOlfr193, Olfr1540-ps1
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192
Downstream geneOlfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305J06.bB6Ng01-305J06.g
ACCGA098835GA098836
length1,1481,171
definitionB6Ng01-305J06.b B6Ng01-305J06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctataatctagattcttaaaacagttctttccttgattatg
accctattacatacatacagaacttttacacctagccaatttgtaatttc
ataaactgcacagaaaatttaaaaggtatcttttctttaaatacattaac
atgttcaaacctttattggaaaaatgaagtaatttcttcactctgaagaa
aagttttcatcatatgtagtgatatgaaataaatttcatggccaacctga
taactacagagttgtgttttaaattctactacccaacattttactctaag
aattttagtgtgtgctgtgtgacatcagtcatttttcatttcagagacag
ccagtgaggacatggaaatggacaacacaacactgctcattcagtttgtt
ctctcaggacttgttcatctgccccagtggaaaatccccctgttcctgct
gttcttggtcatctatctcatcaccattgtgggcaaccttggtctgatca
ctctcatctggaatgatcctcaccttcacattcctatgtacttttttctt
gggagtttagcatttgtggatacttggttatcatctacagtgacaccaaa
gatgctacaagacatttttgccaagaataaaatgatatctttctctgagt
gcatgatacagtttttttcatttggaatcagtgcaaccacggaatgtttt
cttttggcatcaatggcctatgatcgctatgtagccatatgcaaaccttt
actctacccagtgatcatgacaaatagactctgtgtacgtcttttaacat
tgtcctttgtaggtggattcattcatgctttaattcatgaaggcttttta
ttcagattaattttctgtagctctcacataatagaccacttttattgtga
tgttatgccactgttaaagatttcctgtaatgacccttctatcaattacc
tgatgctctttattttctctggctcaattcaggtattcacaattacacta
tccttgtctctatacacttgtttctgttttctatcctaagcagaaatcct
ctcaaagcaataaagaagcttttccaccctgtggagcccatcctcctctc
ctgttctttgtactatggaccctctggctctcatgtatggtgcgccct
gaattccttgatccacttagacttgagctttgtacaaagagataagaatg
gattaattcccattcttctatgtgttcaccgcctgttcacccagcaccat
tggttgaaaatgctgtctttttttccactggatgtgtcttagttagagtt
ttactgctgtgaacagacaccatgaccaagacaagtcttataaaaaacaa
catttaattggggctggcttacaggctcagtcagaagtttcatccattat
catcaaggtgagagcatggcagtatcccggcaggcatggcgcaggctgag
ctgagagttctacacctttatccaaaggctgctagtggaagactgacttc
caggcaactagggtgaggatcttatgcccacacccacagtgacacaccta
ctccaaccaggtcacacctattccaacaaggccatacctccaaatggtgc
cactgcctggtgcaagaatatacaaaccatcacaggatggttttagatcc
aatctgaatgggctaagatcaaaaactcaggtcacagcagatgctgacta
ggatgtggagatagaggaacactcctccatttttggtgggattgcaagct
ggtacaaccaccctggaaatcacgttggcagttcctcagaaaattggacc
tagtactactagaagatccagcagtaccattcctgggcatatactcagaa
tatgttccaacttgtaataaagacatatgttccactatgttcatagcagc
cttatttataatagtccgaagctggaaagaacacagctgtccctcataga
ggaatgaatacagaaaatgtgctacatttacacaaaggagtactacacag
ctattaaaaacaataaatttatgaaattcttagacaaatgggatggaact
ataaaatagcatcctgagtgaggtaaccaaatcacaaaagacacacatga
tatgcactcacttataggtggttattagccaaaagcttcagatatccaag
atacatccacaaacacattaactcagagaagaaggacatggtggtgatac
ttcgatctcctagatgggaacaaacactcatgaaggagtacgacacaaag
tgtaagcagactgagctatgaccatccaggactgcccacctggggaattc
caactcccattatgacaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59109649_59110795
seq2: B6Ng01-305J06.b_45_1192 (reverse)

seq1  AGGGCGCA-CATACATGAAGAG-CAGAGGG-CCATAGTACAAAGAAACAG  47
      |||||||| |||||||| |||| ||||||| |||||||||||||||   |
seq2  AGGGCGCACCATACATG-AGAGCCAGAGGGTCCATAGTACAAAGAACAGG  49

seq1  AGAGGA-GATGGGCTCCACA-GGTGGAAAAGGCTTTCTTTATGCTTTTGA  95
      |||||| ||||||||||||| ||||||||||   ||||||||   |||||
seq2  AGAGGAGGATGGGCTCCACAGGGTGGAAAAG--CTTCTTTATTGCTTTGA  97

seq1  GA-GATTTCTGCTTTAGGATAGAAAACAG-AACAAGTGTATAAGAGACAA  143
      || ||||||||| |||||||||||||||| ||||||||||| ||||||||
seq2  GAGGATTTCTGC-TTAGGATAGAAAACAGAAACAAGTGTAT-AGAGACAA  145

seq1  GGATAGTTGTAATTGTGAATACCTGAATTGAGCCAGAGAAAATAAAGAGC  193
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAG-TGTAATTGTGAATACCTGAATTGAGCCAGAGAAAATAAAGAGC  194

seq1  ATCAGGTAATTGATAGAAGGGTCATTACAGGAAATCTTTAACAGTGGCAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAATTGATAGAAGGGTCATTACAGGAAATCTTTAACAGTGGCAT  244

seq1  AACATCACAATAAAAGTGGTCTATTATGTGAGAGCTACAGAAAATTAATC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACAATAAAAGTGGTCTATTATGTGAGAGCTACAGAAAATTAATC  294

seq1  TGAATAAAAAGCCTTCATGAATTAAAGCATGAATGAATCCACCTACAAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAAGCCTTCATGAATTAAAGCATGAATGAATCCACCTACAAAG  344

seq1  GACAATGTTAAAAGACGTACACAGAGTCTATTTGTCATGATCACTGGGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTAAAAGACGTACACAGAGTCTATTTGTCATGATCACTGGGTA  394

seq1  GAGTAAAGGTTTGCATATGGCTACATAGCGATCATAGGCCATTGATGCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGGTTTGCATATGGCTACATAGCGATCATAGGCCATTGATGCCA  444

seq1  AAAGAAAACATTCCGTGGTTGCACTGATTCCAAATGAAAAAAACTGTATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACATTCCGTGGTTGCACTGATTCCAAATGAAAAAAACTGTATC  494

seq1  ATGCACTCAGAGAAAGATATCATTTTATTCTTGGCAAAAATGTCTTGTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCAGAGAAAGATATCATTTTATTCTTGGCAAAAATGTCTTGTAG  544

seq1  CATCTTTGGTGTCACTGTAGATGATAACCAAGTATCCACAAATGCTAAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGTGTCACTGTAGATGATAACCAAGTATCCACAAATGCTAAAC  594

seq1  TCCCAAGAAAAAAGTACATAGGAATGTGAAGGTGAGGATCATTCCAGATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAAAAAAGTACATAGGAATGTGAAGGTGAGGATCATTCCAGATG  644

seq1  AGAGTGATCAGACCAAGGTTGCCCACAATGGTGATGAGATAGATGACCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATCAGACCAAGGTTGCCCACAATGGTGATGAGATAGATGACCAA  694

seq1  GAACAGCAGGAACAGGGGGATTTTCCACTGGGGCAGATGAACAAGTCCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGAACAGGGGGATTTTCCACTGGGGCAGATGAACAAGTCCTG  744

seq1  AGAGAACAAACTGAATGAGCAGTGTTGTGTTGTCCATTTCCATGTCCTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAACTGAATGAGCAGTGTTGTGTTGTCCATTTCCATGTCCTCA  794

seq1  CTGGCTGTCTCTGAAATGAAAAATGACTGATGTCACACAGCACACACTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCTCTGAAATGAAAAATGACTGATGTCACACAGCACACACTAA  844

seq1  AATTCTTAGAGTAAAATGTTGGGTAGTAGAATTTAAAACACAACTCTGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAGAGTAAAATGTTGGGTAGTAGAATTTAAAACACAACTCTGTA  894

seq1  GTTATCAGGTTGGCCATGAAATTTATTTCATATCACTACATATGATGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGGTTGGCCATGAAATTTATTTCATATCACTACATATGATGAAA  944

seq1  ACTTTTCTTCAGAGTGAAGAAATTACTTCATTTTTCCAATAAAGGTTTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTCAGAGTGAAGAAATTACTTCATTTTTCCAATAAAGGTTTGA  994

seq1  ACATGTTAATGTATTTAAAGAAAAGATACCTTTTAAATTTTCTGTGCAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAATGTATTTAAAGAAAAGATACCTTTTAAATTTTCTGTGCAGT  1044

seq1  TTATGAAATTACAAATTGGCTAGGTGTAAAAGTTCTGTATGTATGTAATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATTACAAATTGGCTAGGTGTAAAAGTTCTGTATGTATGTAATA  1094

seq1  GGGTCATAATCAAGGAAAGAACTGTTTTAAGAATCTAGATTATAGAATGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATAATCAAGGAAAGAACTGTTTTAAGAATCTAGATTATAGAATGA  1144

seq1  ATTC  1147
      ||||
seq2  ATTC  1148