BAC Information

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BAC

Clone NameB6Ng01-306F16
Chromosome16 (Build37)
Map Location 86,147,247 - 86,247,997
singlet/doubletdoublet
Overlap geneLOC100039780
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306F16.bB6Ng01-306F16.g
ACCGA099415GA099416
length1,162992
definitionB6Ng01-306F16.b B6Ng01-306F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,147,247 - 86,148,426)(86,247,443 - 86,247,997)
sequence
gaattcccagcttagtagccaggaatgttatgggagctatttaagggcaa
atctaagtggcttggttgttattttccaagaaccgaaactctcagaatgt
tgagaatttacctggcccttgcaaggtagggcttacaggttaacttttgg
gtcttacaagatgactctgtcaaaagatgtttgtcctcatatcatgtgat
atattttcagattgctatgagtactatgaaggaaataacgcggtactgac
ttagctgatgacaggagtatgctagtttgtttacatgttctcgaagagaa
attgaagaaatataattttccctactatatgtaggatatggatggttaat
ccatattgccatgtaaagataaaaatgttcatctgtagtataaagcaaac
ttgcatccacctttatgtaagccttagtgaaatgtcgaaaatttcagagg
tttgggaaaacagttaatgtactcctagcagtaaatgggaaaaagacatt
actttcttccttcaaaatatcactatcatctccattatcacctatgttaa
tagcaactctcagcttcaagggacattttaaaaacacgtgtccagaagaa
tgtaaaggcttcttaagacacttgacactttgtaaaacacagctacaaac
attttcagaaaaccttagaactttagaccaaagagctctcatacaggtga
ttatctgttttcttctttctttctttctttctttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttctcttcttcttcttctccttcttcttcttcttctttgtcctctt
cccttcttcttcctcctcctcctcctcctcttctccttctcattcttctt
ctcctcctcctccttcgtcatcgttgtcttcttctttgttgatttactta
atttattttgtatttttattagattatgtttccttcttacattccatgtt
atcccctttcatatttttctcttctggaaatccctacttcccccttccct
tccctgcatcaaccaacctactgcgcttctgaccctggcattcccttatt
aatgggcattgacttcacaggacaagctctcctcatgatgacaactaatc
ctatcctctgct

gaattctttatttagctctgtaccccaattttaatagggttatttggttc
tctagagtctaacttcttgtattctttgtatatattgaatattagtcctc
tattagatgtagggttggtaaagatcttttcctaatctgttggttgccat
ttcaccctattgacaatgtcctttgccttacagaaactttgcaattttat
gaggtcctatttgttgaatgttgattttaaagcataagatattggtgttc
tgcttagagagttagaaagagcaatttccaaattcacttggaataacaaa
acccaggatagcaaaaactattctcaacaataaaagaacttctgggggaa
tcaccatctctgacatcaagctgtattacaaatcaatagtgataaaaaac
tgcatggtattgacgcagagacaggcagatagatcaatggaatagaattg
aacacccagaaatgaactcacacacctatagtcacttgatctttgacaaa
ggagttgaaccatccagtaatagaagagaaagtgcagaagagccttgaac
acacggacatggggggaattttactgaattctttgttcttaatccaaggc
agaaaaatattacacaaccattagatacttcaaacatgagcagtaattca
ttattactgtcttctcaattcattttacaaagctcttaatctcgctgtaa
gtaggaacatgactcagcttacctctggttatcctttttctagagcttgt
caattgcatttttctgccttgtatatatgccctgtaaaaatgattttatc
tttgtcaatagagttcgaattactattgttttcaatggacctattacgag
tgtaatatctttttttattttgaaagtacacttttaaatcagagttgctt
ttatacaaatttatacaaaagcttaaagtgcaaagcagcagtagatgctt
gcaaaggaaggaggagggacgaggaaggagggatgaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86147247_86148426
seq2: B6Ng01-306F16.b_47_1208

seq1  GAATTCCCAGCTTAGTAGCCAGGAATGTTATGGGAGCTATTTAAGGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTTAGTAGCCAGGAATGTTATGGGAGCTATTTAAGGGCAA  50

seq1  ATCTAAGTGGCTTGGTTGTTATTTTCCAAGAACCGAAACTCTCAGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGCTTGGTTGTTATTTTCCAAGAACCGAAACTCTCAGAATGT  100

seq1  TGAGAATTTACCTGGCCCTTGCAAGGTAGGGCTTACAGGTTAACTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTACCTGGCCCTTGCAAGGTAGGGCTTACAGGTTAACTTTTGG  150

seq1  GTCTTACAAGATGACTCTGTCAAAAGATGTTTGTCCTCATATCATGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAAGATGACTCTGTCAAAAGATGTTTGTCCTCATATCATGTGAT  200

seq1  ATATTTTCAGATTGCTATGAGTACTATGAAGGAAATAACGCGGTACTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAGATTGCTATGAGTACTATGAAGGAAATAACGCGGTACTGAC  250

seq1  TTAGCTGATGACAGGAGTATGCTAGTTTGTTTACATGTTCTCGAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGATGACAGGAGTATGCTAGTTTGTTTACATGTTCTCGAAGAGAA  300

seq1  ATTGAAGAAATATAATTTTCCCTACTATATGTAGGATATGGATGGTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAATATAATTTTCCCTACTATATGTAGGATATGGATGGTTAAT  350

seq1  CCATATTGCCATGTAAAGATAAAAATGTTCATCTGTAGTATAAAGCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGCCATGTAAAGATAAAAATGTTCATCTGTAGTATAAAGCAAAC  400

seq1  TTGCATCCACCTTTATGTAAGCCTTAGTGAAATGTCGAAAATTTCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCACCTTTATGTAAGCCTTAGTGAAATGTCGAAAATTTCAGAGG  450

seq1  TTTGGGAAAACAGTTAATGTACTCCTAGCAGTAAATGGGAAAAAGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAAACAGTTAATGTACTCCTAGCAGTAAATGGGAAAAAGACATT  500

seq1  ACTTTCTTCCTTCAAAATATCACTATCATCTCCATTATCACCTATGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCCTTCAAAATATCACTATCATCTCCATTATCACCTATGTTAA  550

seq1  TAGCAACTCTCAGCTTCAAGGGACATTTTAAAAACACGTGTCCAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTCTCAGCTTCAAGGGACATTTTAAAAACACGTGTCCAGAAGAA  600

seq1  TGTAAAGGCTTCTTAAGACACTTGACACTTTGTAAAACACAGCTACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGCTTCTTAAGACACTTGACACTTTGTAAAACACAGCTACAAAC  650

seq1  ATTTTCAGAAAACCTTAGAACTTTAGACCAAAGAGCTCTCATACAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAAAACCTTAGAACTTTAGACCAAAGAGCTCTCATACAGGTGA  700

seq1  TTATCTGTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTTCTTCTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTC  750

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  800

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTTGTCC  850
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTC----TCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTTGTCC  846

seq1  TCTTCCCTTCTTCTTCCTCCTCCTCCTCCTCCTCTTCTCCTTCTCCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTCCCTTCTTCTTCCTCCTCCTCCTCCTCCTCTTCTCCTTCTCATTCT  896

seq1  TCTTCTCCTCCTCCTCCTTCGTCATCGTTGTCTTCTTCTTTGTTGATTTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTCTCCTCCTCCTCCTTCGTCATCGTTGTCTTCTTCTTTGTTGA-TTT  945

seq1  ACTTATTTATTTTTGTTATTTTTATTAGA-TATG-TTCCTTCTTTACATT  998
      ||||| ||  ||||| ||||||||||||| |||| ||||||| |||||||
seq2  ACTTAATTTATTTTG-TATTTTTATTAGATTATGTTTCCTTC-TTACATT  993

seq1  TCCAATGTTATCCCCTTTCATATTTTCCTC-TCTGAAAATCCCCTAC-TC  1046
        | |||||||||||||||||||||| ||| |||| |||| |||||| ||
seq2  --CCATGTTATCCCCTTTCATATTTTTCTCTTCTGGAAAT-CCCTACTTC  1040

seq1  CCCCCTCCCTCCCCTGCTCCCAACCCACCCACTGCCGCTTCCTGGCCCTG  1096
      |||| ||||| ||||||   ||||| ||| |||| ||||| ||| |||||
seq2  CCCCTTCCCTTCCCTGC-ATCAACCAACCTACTG-CGCTT-CTGACCCTG  1087

seq1  GCATTCCCCTATAATGGGGCATTGAACCTTCACAGGACCAAGGGCCTCTC  1146
      |||||||| ||| |  |||||||||  |||||||||| ||||   |||||
seq2  GCATTCCCTTATTAATGGGCATTGA--CTTCACAGGA-CAAG---CTCTC  1131

seq1  CTCCCATTGATGACCAACTAATCC-ATCCTCTGCT  1180
      |||    |||||| |||||||||| ||||||||||
seq2  CTC---ATGATGA-CAACTAATCCTATCCTCTGCT  1162


seq1: chr16_86247443_86247997
seq2: B6Ng01-306F16.g_494_1057 (reverse)

seq1  TCCTCCTCAT-CCTCC-TCCTC-TTCCTCCT-CTTCCTTTGC-AGCATCT  45
      |||||||||| ||||| ||||| | |||||| |||||||||| |||||||
seq2  TCCTCCTCATCCCTCCTTCCTCGTCCCTCCTCCTTCCTTTGCAAGCATCT  50

seq1  ACTGCTGCTTTGCACTTT-AGCTTTTGTATAAATTTGTATAAAAGCAACT  94
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGCTGCTTTGCACTTTAAGCTTTTGTATAAATTTGTATAAAAGCAACT  100

seq1  CTGATTT-AAAGTGTACTTTCAAAAT-AAAAAAGATATTACACTCGTAAT  142
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CTGATTTAAAAGTGTACTTTCAAAATAAAAAAAGATATTACACTCGTAAT  150

seq1  AGGTCCATTG-AAACAATAGTAATTCGAACTCTATTGACAAAGATAAAAT  191
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCATTGAAAACAATAGTAATTCGAACTCTATTGACAAAGATAAAAT  200

seq1  CATTTTTACAGGGCATATATACAAGGCAGAAAAATGCAATTGACAAGCTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACAGGGCATATATACAAGGCAGAAAAATGCAATTGACAAGCTC  250

seq1  TAGAAAAAGGATAACCAGAGGTAAGCTGAGTCATGTTCCTACTTACAGCG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGGATAACCAGAGGTAAGCTGAGTCATGTTCCTACTTACAGCG  300

seq1  AGATTAAGAGCTTTGTAAAATGAATTGAGAAGACAGTAATAATGAATTAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAGCTTTGTAAAATGAATTGAGAAGACAGTAATAATGAATTAC  350

seq1  TGCTCATGTTTGAAGTATCTAATGGTTGTGTAATATTTTTCTGCCTTGGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTTTGAAGTATCTAATGGTTGTGTAATATTTTTCTGCCTTGGA  400

seq1  TTAAGAACAAAGAATTCAGTAAAATTCCCCCCATGTCCGTGTGTTCAAGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACAAAGAATTCAGTAAAATTCCCCCCATGTCCGTGTGTTCAAGG  450

seq1  CTCTTCTGCACTTTCTCTTCTATTACTGGATGGTTCAACTCCTTTGTCAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCACTTTCTCTTCTATTACTGGATGGTTCAACTCCTTTGTCAA  500

seq1  AGATCAAGTGACTATAGGTGTGTGAGTTCATTTCTGGGTGTTCAATTCTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGTGACTATAGGTGTGTGAGTTCATTTCTGGGTGTTCAATTCTA  550

seq1  TTCCATTGATCTAT  555
      ||||||||||||||
seq2  TTCCATTGATCTAT  564


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