BAC Information

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BAC

Clone NameB6Ng01-306K24
Chromosome16 (Build37)
Map Location 20,206,644 - 20,401,491
singlet/doubletdoublet
Overlap geneYeats2, Map6d1, Parl, EG224044, Abcc5
Upstream geneIgl, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, LOC100043459
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306K24.bB6Ng01-306K24.g
ACCGA099652GA099653
length8521,072
definitionB6Ng01-306K24.b B6Ng01-306K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,400,644 - 20,401,491)(20,206,644 - 20,207,722)
sequence
gaattccttactgaaggaaccagggtagatgggtgcatgagtttaatttc
ttttttcctttaaggtgggtactggtttggctttcttttgttatggtttg
gtttgatttttgccaacctcaattttagctaccaggactcgaaaagactc
cgaaggatgccagcatccttgcccagcaggcctagaatctcgcagtctgt
cgggagcagagtgtttcctcgcagcttagcgtgccaacagcacttgcagt
tttaagcagagtacctctttagggaaattttagttgttgttgtttttttt
tttttttttttttttttttcttctccttaatcttctttcttcagcagcaa
ggtctttattgctagagactctacttcattgcagctttgggattccctcc
tcggtgaaagctgccatcctgatgcattgtactccaaactctggaagcag
atatggctctgccatgcatttcctctactgtgtatagttgcaagtgggag
gccagcccatctgtgtgatggctatccccgttcggctctgtatgttccca
ccaaatgttcctgatgcccctgctaatgtacagtgtttgtgagatgctct
ttgaacatggtatctttaaatatatatttcattttcaataaaagtacact
gcttcccacttcctggtatttactgctgttgctgaatgtgcctgtgtgag
tgtgtgctccggcgttgcaggacctcagagctggaggtgaccactcgtgg
tttctgggggctggctgtcttccctccctgcagtggtgttagacataagc
tacctgaggtcaacatgttttttgttttttgagaggaagtggggcgtggg
ga
gaattccaggttcagtctaagtatgtgtcttaaagccccaaggacactat
gtagtttatttagttacataaagcttttgctttgacaggtgtgggtgatg
tcgaaaatatagatttccctctgaattgaagtataggagccaggcttgtt
agaaatgacgtcccttggctgttgacagactacctcagatatgcgcaatc
tcatcaggactggcaatgcttagatggagaagtgactgacccttgcccag
tacgttgttaagccacttaacatttctataatggcttgttgccgcttact
ctattttcctcacacctaaatagcacagtgtcaaaaagatttgtaaggaa
gggccagcctccatattctgtgtgagagcagacagcatctctggtctcca
ccttcctcagggtcagaggctgttgaaggattgtgcttgctgtaatcaag
gtggcaaaacttgttaaatgtatgcttactacagaccacgtagctcacta
ccatggaaggaaagggggaaggctttgatctgaaaagaattgagaacttg
gagccagagatggttaatttgatttaaaaatgttgtctagaaaatattag
catcagattttcatcttcagtcaaagtactgtcaaaaatcttcattggta
ctcagagtggaggtatagtcagctaccagtctctttaaaagtactagtca
agtgtcctgttatctagaatgcttgagaccaggcattgattgcagttttt
tagaatttggaatttttatagagactttatcaagtatagtccgaaaaatc
taaaatgctccataatctagaactttgatgttacttcagtatccaaaatg
ctttgaatttaagatttccagactgtacaatgctgaaagtctaagcagat
tcagtctccgtctttaaactctggggagttttcctcactcgtcatcgatg
agcatgacatgtaggacggtagtgtgggcgaagcatcttgcgctcatctg
cttttctgtgagctactcctgtgatgctctgtcaccatttgctacagacc
tgcagtcttgcttgctgctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20400644_20401491
seq2: B6Ng01-306K24.b_46_897 (reverse)

seq1  TCCCCACG-CCCACTCCCTCTCAAAAA--CAAAAACATGTT-ACCTCAGG  46
      |||||||| |||||| |||||||||||   ||||||||||| ||||||||
seq2  TCCCCACGCCCCACTTCCTCTCAAAAAACAAAAAACATGTTGACCTCAGG  50

seq1  TAGCTTATGTCTAACACCACCTGCAGGGAGGGAAGACAGCCAGCCCCCAG  96
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGCTTATGTCTAACACCA-CTGCAGGGAGGGAAGACAGCCAGCCCCCAG  99

seq1  AAACCACGAGT-GTCACCTCCAGCTCTGAGGTCCTGCAACGCCGGAGCAC  145
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACCACGAGTGGTCACCTCCAGCTCTGAGGTCCTGCAACGCCGGAGCAC  149

seq1  ACACTCACACAGGCACATTCAGCAACAGCAGTAAATACCAGGAAGTGGGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACAGGCACATTCAGCAACAGCAGTAAATACCAGGAAGTGGGA  199

seq1  AGCAGTGTACTTTTATTGAAAATGAAATATATATTTAAAGATACCATGTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTACTTTTATTGAAAATGAAATATATATTTAAAGATACCATGTT  249

seq1  CAAAGAGCATCTCACAAACACTGTACATTAGCAGGGGCATCAGGAACATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCATCTCACAAACACTGTACATTAGCAGGGGCATCAGGAACATT  299

seq1  TGGTGGGAACATACAGAGCCGAACGGGGATAGCCATCACACAGATGGGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAACATACAGAGCCGAACGGGGATAGCCATCACACAGATGGGCT  349

seq1  GGCCTCCCACTTGCAACTATACACAGTAGAGGAAATGCATGGCAGAGCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCACTTGCAACTATACACAGTAGAGGAAATGCATGGCAGAGCCA  399

seq1  TATCTGCTTCCAGAGTCTGGAGTACAATGCATCAGGATGGCAGCTTTCAC  445
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCTGCTTCCAGAGTTTGGAGTACAATGCATCAGGATGGCAGCTTTCAC  449

seq1  CGAGGAGGGAATCCCAAAGCTGCAATGAAGTAGAGTCTCTAGCAATAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGGGAATCCCAAAGCTGCAATGAAGTAGAGTCTCTAGCAATAAAG  499

seq1  ACCTTGCTGCTGAAGAAAGAAGATTAAGGAGAAGAAAAAAAAAAAAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTGCTGAAGAAAGAAGATTAAGGAGAAGAAAAAAAAAAAAAAAA  549

seq1  AAAAAAAAAAACAACAACAACTAAAATTTCCCTAAAGAGGTACTCTGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACAACAACAACTAAAATTTCCCTAAAGAGGTACTCTGCTT  599

seq1  AAAACTGCAAGTGCTGTTGGCACGCTAAGCTGCGAGGAAACACTCTGCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCAAGTGCTGTTGGCACGCTAAGCTGCGAGGAAACACTCTGCTC  649

seq1  CCGACAGACTGCGAGATTCTAGGCCTGCTGGGCAAGGATGCTGGCATCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGACTGCGAGATTCTAGGCCTGCTGGGCAAGGATGCTGGCATCCT  699

seq1  TCGGAGTCTTTTCGAGTCCTGGTAGCTAAAATTGAGGTTGGCAAAAATCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGTCTTTTCGAGTCCTGGTAGCTAAAATTGAGGTTGGCAAAAATCA  749

seq1  AACCAAACCATAACAAAAGAAAGCCAAACCAGTACCCACCTTAAAGGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCATAACAAAAGAAAGCCAAACCAGTACCCACCTTAAAGGAAA  799

seq1  AAAGAAATTAAACTCATGCACCCATCTACCCTGGTTCCTTCAGTAAGGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTAAACTCATGCACCCATCTACCCTGGTTCCTTCAGTAAGGAA  849

seq1  TTC  848
      |||
seq2  TTC  852

seq1: chr16_20206644_20207722
seq2: B6Ng01-306K24.g_66_1137

seq1  GAATTCCAGGTTCAGTCTAAGTATGTGTCTTAAAGCCCCAAGGACACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCAGTCTAAGTATGTGTCTTAAAGCCCCAAGGACACTAT  50

seq1  GTAGTTTATTTAGTTACATAAAGCTTTTGCTTTGACAGGTGTGGGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTATTTAGTTACATAAAGCTTTTGCTTTGACAGGTGTGGGTGATG  100

seq1  TCGAAAATATAGATTTCCCTCTGAATTGAAGTATAGGAGCCAGGCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAATATAGATTTCCCTCTGAATTGAAGTATAGGAGCCAGGCTTGTT  150

seq1  AGAAATGACGTCCCTTGGCTGTTGACAGACTACCTCAGATATGCGCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACGTCCCTTGGCTGTTGACAGACTACCTCAGATATGCGCAATC  200

seq1  TCATCAGGACTGGCAATGCTTAGATGGAGAAGTGACTGACCCTTGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGACTGGCAATGCTTAGATGGAGAAGTGACTGACCCTTGCCCAG  250

seq1  TACGTTGTTAAGCCACTTAACATTTCTATAATGGCTTGTTGCCGCTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTGTTAAGCCACTTAACATTTCTATAATGGCTTGTTGCCGCTTACT  300

seq1  CTATTTTCCTCACACCTAAATAGCACAGTGTCAAAAAGATTTGTAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTCACACCTAAATAGCACAGTGTCAAAAAGATTTGTAAGGAA  350

seq1  GGGCCAGCCTCCATATTCTGTGTGAGAGCAGACAGCATCTCTGGTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCCTCCATATTCTGTGTGAGAGCAGACAGCATCTCTGGTCTCCA  400

seq1  CCTTCCTCAGGGTCAGAGGCTGTTGAAGGATTGTGCTTGCTGTAATCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCAGGGTCAGAGGCTGTTGAAGGATTGTGCTTGCTGTAATCAAG  450

seq1  GTGGCAAAACTTGTTAAATGTATGCTTACTACAGACCACGTAGCTCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAACTTGTTAAATGTATGCTTACTACAGACCACGTAGCTCACTA  500

seq1  CCATGGAAGGAAAGGGGGAAGGCTTTGATCTGAAAAGAATTGAGAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGGAAAGGGGGAAGGCTTTGATCTGAAAAGAATTGAGAACTTG  550

seq1  GAGCCAGAGATGGTTAATTTGATTTAAAAATGTTGTCTAGAAAATATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGATGGTTAATTTGATTTAAAAATGTTGTCTAGAAAATATTAG  600

seq1  CATCAGATTTTCATCTTCAGTCAAAGTACTGTCAAAAATCTTCATTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTTTCATCTTCAGTCAAAGTACTGTCAAAAATCTTCATTGGTA  650

seq1  CTCAGAGTGGAGGTATAGTCAGCTACCAGTCTCTTTAAAAGTACTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGGAGGTATAGTCAGCTACCAGTCTCTTTAAAAGTACTAGTCA  700

seq1  AGTGTCCTGTTATCTAGAATGCTTGAGACCAGGCATTGATTGCAGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTGTTATCTAGAATGCTTGAGACCAGGCATTGATTGCAGTTTTT  750

seq1  TAGAATTTGGAATTTTTATAGAGACTTTATCAAGTATAGTCCGAAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGGAATTTTTATAGAGACTTTATCAAGTATAGTCCGAAAAATC  800

seq1  TAAAATGCTCCATAATCTAGAACTTTGATGTTACTTCAGTATCCAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTCCATAATCTAGAACTTTGATGTTACTTCAGTATCCAAAATG  850

seq1  CTTTGAATTTAAGATTTCCAGACTGTAC-ATGCTGAAAGTCTAAGCAGAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTGAATTTAAGATTTCCAGACTGTACAATGCTGAAAGTCTAAGCAGAT  900

seq1  TCAGTCTCCGTCTTTAAACTCTGGGGAGTTTTCCTCACTCGTCATCGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCGTCTTTAAACTCTGGGGAGTTTTCCTCACTCGTCATCGATG  950

seq1  AGCAGGACATGGAGGAACGGTAGTGTGGGCGAAGCATC-TGCGCTCATCT  998
      |||| |||||| ||| |||||||||||||||||||||| |||||||||||
seq2  AGCATGACATGTAGG-ACGGTAGTGTGGGCGAAGCATCTTGCGCTCATCT  999

seq1  GCTTTTCCTGTTGAGCTACTTCCTGTGATGCTCCTGTCACCCATTTTGCT  1048
      |||||| ||| |||||||| |||||||||||| ||||||||   ||||| 
seq2  GCTTTT-CTG-TGAGCTAC-TCCTGTGATGCT-CTGTCACC--ATTTGC-  1042

seq1  TACAGACCTGCAGTCTGGCTCGGCTGCTGCT  1079
      |||||||||||||||| |||  |||||||||
seq2  TACAGACCTGCAGTCTTGCT-TGCTGCTGCT  1072