BAC Information

Click to search

BAC

Clone NameB6Ng01-307B12
Chromosome16 (Build37)
Map Location 78,582,709 - 78,583,489
singlet/doubletsinglet
Overlap genenone
Upstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream gene4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307B12.bB6Ng01-307B12.g
ACCGA099956GA099957
length7821,160
definitionB6Ng01-307B12.b B6Ng01-307B12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggaagctcatgaatcagctattctgctatatgcggtgagagt
gaacaagagtcagggtggatatcaaggaccaaagttatcctttgacctct
gcaatacactgtggcacatgcgctttcgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgacataataaacctaataagcccctcaaattagtgactc
actgaagtgtattgtaaacaaaggctatctttacaattaggcttgatcta
acgtagacattactgtgaactggggtttcgaatagtcccaaatcgtttga
tgtacatggattaaaaccccaaattaacagtacctgaatcgtgtaagggc
ttctgtgtgcctctgagcaagctcagcagagccaagcactcacagctgtc
atcgtcaagactgcctcctctgctttatctccagctaggcaccatatttt
cctccaggaaaaagaatagaaacggaaggtgtgggaaaggcctgagagta
agccacacatttcacttcagccaggaagcaagccatttcctatgaggcca
tagcagagttttgtttatatataatcgtcactggtaacaggtttgagaaa
aaataggtcttcctttttttttttcctggactccacaacaacaacaacaa
caaacatgcaaacaaaaccaaaacaaaaacatagcaagaaaaagaggtat
gtatatatttcttgaaaatgtcttcctttgtgtgctagaaaatcatcccc
tatccttcagtaaagatcaacacacacagatt
gaattcatttgagatatagaaaacttgcccatttgcggttctgtttcatt
tctgcccgttttattactgtcacatacatgttgcttctataaatttcata
aactcaataacatgtgatacagacatacctcagaaatgtgattccagacc
acagcaataaaataaatattgtaataaagcaagccacacaattcctcttt
gctttccaagtgcctataaaagttatagctctgctgtgctatattctatt
aaagctcaactgtgtgatgtctaaaaaacacacacacctcaactgaaagt
tacatcattatatttttttaaataatagcaatcctgaggcttcttacaat
tactaacaggagtaatcttttatgctcatgtaggatcttgcctcactgtt
gatggctgctagctggtaatatgacaatggtaacttcattattttaattt
ttaatacttaaaaatactccctgcatattttcattgtacatggtacaggg
ctacctatggatatttctctgatatcaatgagactaaacacttttcaagt
gtttattaaccattttcattttttcttttatcggtttttgtttttgtttt
tttttctgagacagggtttctctctgcagccctagctgtcctggaactca
ctcggtagaccaggctggcctcgaactcagaactccccctgtctctgcct
cccaagtgctggaattaaaggcattcgccaccatggcccagctcattttt
tttttcttttgagaactgtctattcacctcactaatccattcactgattg
agttgttttttgagggctttttggtttagtttttgagtgaatagtctaaa
tattaatcttctcctagatgtatagatatcaaagatttcccccaagtact
taatgtatgttaggcatagcctcaacccacaactctccattttaatgatt
cttcccacctctgtaagctctttgcttctttagttcacttgtctttatat
gaatatatatatatatacgttatatatatatacacacacaccacccacat
atattatataaccacataagtagtaccatgaagaagttaaacataattct
ttccttctagactttctgatccttaaatgatatgcgaggtaccattccaa
ttcaccgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78582709_78583489
seq2: B6Ng01-307B12.b_48_829

seq1  GAATTCCTGGAAGCTCATGAATCAGCTATTCTGCTATATGCGGTGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAGCTCATGAATCAGCTATTCTGCTATATGCGGTGAGAGT  50

seq1  GAACAAGAGTCAGGGTGGATATCAAGGACCAAAGTTATCCTTTGACCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGTCAGGGTGGATATCAAGGACCAAAGTTATCCTTTGACCTCT  100

seq1  GCAATACACTGTGGCACATGCGCTTTCGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACACTGTGGCACATGCGCTTTCGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTGACATAATAAACCTAATAAGCCCCTCAAATTAGTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGACATAATAAACCTAATAAGCCCCTCAAATTAGTGACTC  200

seq1  ACTGAAGTGTATTGTAAACAAAGGCTATCTTTACAATTAGGCTTGATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGTATTGTAAACAAAGGCTATCTTTACAATTAGGCTTGATCTA  250

seq1  ACGTAGACATTACTGTGAACTGGGGTTTCGAATAGTCCCAAATCGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGACATTACTGTGAACTGGGGTTTCGAATAGTCCCAAATCGTTTGA  300

seq1  TGTACATGGATTAAAACCCCAAATTAACAGTACCTGAATCGTGTAAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGATTAAAACCCCAAATTAACAGTACCTGAATCGTGTAAGGGC  350

seq1  TTCTGTGTGCCTCTGAGCAAGCTCAGCAGAGCCAAGCACTCACAGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGCCTCTGAGCAAGCTCAGCAGAGCCAAGCACTCACAGCTGTC  400

seq1  ATCGTCAAGACTGCCTCCTCTGCTTTATCTCCAGCTAGGCACCATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCAAGACTGCCTCCTCTGCTTTATCTCCAGCTAGGCACCATATTTT  450

seq1  CCTCCAGGAAAAAGAATAGAAACGGAAGGTGTGGGAAAGGCCTGAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGAAAAAGAATAGAAACGGAAGGTGTGGGAAAGGCCTGAGAGTA  500

seq1  AGCCACACATTTCACTTCAGCCAGGAAGCAAGCCATTTCCTATGAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACATTTCACTTCAGCCAGGAAGCAAGCCATTTCCTATGAGGCCA  550

seq1  TAGCAGAGTTTTGTTTATATATAATCGTCACTGGTAACAGGTTTGAG-AA  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGCAGAGTTTTGTTTATATATAATCGTCACTGGTAACAGGTTTGAGAAA  600

seq1  AAATAGGTCTTCCTTTTTTTTTTTCCTGGACTCCACAACAACAACAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTCTTCCTTTTTTTTTTTCCTGGACTCCACAACAACAACAACAA  650

seq1  CAAACAAACAAACAAAACCAAAACAAAAACAAAGCAAGAAAAAGAGGTAT  699
      ||||||  ||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAACATGCAAACAAAACCAAAACAAAAACATAGCAAGAAAAAGAGGTAT  700

seq1  GTATATATTTCTTGAAAATGTCTTCCATTTGTGTGTTAGAAAATCAT-CC  748
      |||||||||||||||||||||||||| |||||||| ||||||||||| ||
seq2  GTATATATTTCTTGAAAATGTCTTCC-TTTGTGTGCTAGAAAATCATCCC  749

seq1  CTATCCTTCAGTAAAGATCAACACACACAGATT  781
      |||||||||||||||||||||||||||||||||
seq2  CTATCCTTCAGTAAAGATCAACACACACAGATT  782