BAC Information

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BAC

Clone NameB6Ng01-307G20
Chromosome16 (Build37)
Map Location 81,366,407 - 81,479,588
singlet/doubletdoublet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307G20.bB6Ng01-307G20.g
ACCGA100204GA100205
length1,1701,153
definitionB6Ng01-307G20.b B6Ng01-307G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,478,411 - 81,479,588)(81,366,407 - 81,367,562)
sequence
gaattctcttggataaggtcaatggatgcataccactatccataaaaagg
ggaaatatgttatggatgttatcaaacaacttagcagcacgtaccatatc
ctgttgtactattatattcttttctgtacacttgtttaaaattacatgtc
aaagaggtgtgggataaagttttccactgatgcatatcaattgatagaag
gtgtaattgatttaacaacattactatcaggagaaaatttgatgaaagat
gcctaaaaagtatgaaacataaattgcctgaggtattcgaaatacttggg
tatgagaaaataagacatgtaacaaagaccctgcattcctacctgtgttg
ggaaacagattcgacaagtattcactccagtacaaggaagagtgctgtca
attttgtgaaaatatattaaaaattacattacttagtaataaaaaatgat
gcagtgtactatcttgtggtggtgatcaaaatagcaggagcagttatttc
ctagaatttagtaaggggtggacaaagtcataacagataatctttattac
cttttcaactttagctcctaaaaatagggtgcagatgtactgtttatcaa
taaaatatgcctgaaaattttacataagatacattgtgtaacaaaatgag
actttaaattatacataaaataattatcaatccttagtaatatttaaata
aatgaattcttattaattaataatttatatatctttgaatacactgatac
agttattaaatgtaaacatagacattctacagtaactctaactttttttt
cagacatgactgaaatacttgacaaattcaaatttcacttgtaaaagtat
attaaagggcagggtttggcgttattatttcattagaagccatcacattt
tttttaacagttaagtgaccatggggtagtatctagagaaaggcaaaact
ttaaaaccaacaataaaaaacagtgtagcatgtgtgggtgacattacaaa
tatcagcaaacaatagctgtactattgagcataagcatgctacactacta
gtgacccttacttcactgaaccacacatctgactgagtttgtacaaaaca
ctacgttactgcagaatatggtaaattaccccacccattcagaactccct
catctcctgagcaagtacac

gaattccaaattagaaaacaacataccaggaagaaagttaaattttctgt
catatttcattagtggcttaactggctttttattgtaagttaatggtttt
attttatgttttagttgtaagaaccagtgaacatagaaacaaatagtgag
tcagataaaaagatcaccctgacaaaattatattcaacaaaagaacttga
tgctaactgtggaatatgaagctaaatgcactgaaaatgacatgttttta
aacaatgtgttccatgtttaaagatgaggttatctttttcctcctagggc
atcatcaggcttagtagcaaggacactttaatattacattttggttatac
ctttctactctatattctgttttcttctttgtgtgttgttcagcagtttt
ataatttacataatgactgttgtcattttcacctctattctcttcccttg
tatcttctttgcagactcccacgcagagcatcttttaatcaatgagatgc
tccctgtctttcaacttcaactctctaagagagcattttgatacctctca
gggaaataatatcaaccttacattgatgtttataatggcaaatgtactct
ttcctaatcacaggttttaaatatttagatatttcttctttagctatttc
ttcttttgcaatgcatatatgtaaataatgaaattaattttctaggtaat
actaattttcaccttttaagcaataggactttcattaaaatgaaatgaaa
agagaggcttttgtaatatttgctcttaacatgtatgtagagacttgact
gcttctgtggataatcaccctgttcatttccaattacatccaatttgaaa
aaagcaatcagatacttaagttgactttaatctctaggcccaaagatttt
actttagattgatatgaaaaagttggaatattaaaaaaaataaaatagat
agactcgcgactccaggcatatttgtattctgttctcaccatgttttgat
ggcaaccctttttaaatgacactgcctgtcatatctatggttggtgaatc
tagtatgtatgtatatatatgtatacacacacacacaccactgtgattca
tctttagtcagctctcatctcacaaaatatgccatatagaatccatttat
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81478411_81479588
seq2: B6Ng01-307G20.b_44_1213 (reverse)

seq1  GTGTACTTGCTAAGGAGATGAGGGATGTCTGATTGTGTGTGTGTATATTT  50
      ||||||||||| |||||||||||||  ||||| || ||| | ||| ||||
seq2  GTGTACTTGCTCAGGAGATGAGGGAGTTCTGAATGGGTG-GGGTA-ATTT  48

seq1  TCACCATA-TCTCCAGT-ACGTAGTGTTTTGTACAAACTCAGTCCAGATT  98
        |||||| ||| |||| ||||||||||||||||||||||||| |||| |
seq2  --ACCATATTCTGCAGTAACGTAGTGTTTTGTACAAACTCAGT-CAGA-T  94

seq1  GTGT-GTTCAGTTGAAGTAAAGGGTCACTAGTAGTGTTAGCATGCTTATG  147
      |||| |||||| |||||| ||||||||||||||||| |||||||||||||
seq2  GTGTGGTTCAG-TGAAGT-AAGGGTCACTAGTAGTG-TAGCATGCTTATG  141

seq1  CCTCAATAGTACAAGCTAATTGTTTGCTGATATTTGTAATTGTCACCCAC  197
       ||||||||||| |||| ||||||||||||||||||||| ||||||||||
seq2  -CTCAATAGTAC-AGCT-ATTGTTTGCTGATATTTGTAA-TGTCACCCAC  187

seq1  ACATGCTACACTGTTTTTTATTGTTGGTTTTAAAGTTTTGCCTTTCTCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTACACTGTTTTTTATTGTTGGTTTTAAAGTTTTGCCTTTCTCTA  237

seq1  GATACTACCCCATGGTCACTTAACTGTT-AAAAAAATGTGATGGCTTCTA  296
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATACTACCCCATGGTCACTTAACTGTTAAAAAAAATGTGATGGCTTCTA  287

seq1  ATGAAATAATAACGCCAAACCCTGCCCCTTAATATACTTTTACAAGTGAA  346
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGAAATAATAACGCCAAACCCTGCCCTTTAATATACTTTTACAAGTGAA  337

seq1  ATTTGAATTTGTCAAGTATTTCAGTCATGTCTG-AAAAAAAGTTAGAGTT  395
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTGAATTTGTCAAGTATTTCAGTCATGTCTGAAAAAAAAGTTAGAGTT  387

seq1  ACTGTAGAATGTCTATGTTTACATTTAATAACTGTATCAGTGTATTCAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAATGTCTATGTTTACATTTAATAACTGTATCAGTGTATTCAAA  437

seq1  GATATATAAATTATTAATTAATAAGAATTCATTTATTTAAATATTACTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAAATTATTAATTAATAAGAATTCATTTATTTAAATATTACTAA  487

seq1  GGATTGATAATTATTTTATGTATAATTTAAAGTCTCATTTTGTTACACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATAATTATTTTATGTATAATTTAAAGTCTCATTTTGTTACACAA  537

seq1  TGTATCTTATGTAAAATTTTCAGGCATATTTTATTGATAAACAGTACATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTATGTAAAATTTTCAGGCATATTTTATTGATAAACAGTACATC  587

seq1  TGCACCCTATTTTTAGGAGCTAAAGTTGAAAAGGTAATAAAGATTATCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTATTTTTAGGAGCTAAAGTTGAAAAGGTAATAAAGATTATCTG  637

seq1  TTATGACTTTGTCCACCCCTTACTAAATTCTAGGAAATAACTGCTCCTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTTTGTCCACCCCTTACTAAATTCTAGGAAATAACTGCTCCTGC  687

seq1  TATTTTGATCACCACCACAAGATAGTACACTGCATCATTTTTTATTACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATCACCACCACAAGATAGTACACTGCATCATTTTTTATTACTA  737

seq1  AGTAATGTAATTTTTAATATATTTTCACAAAATTGACAGCACTCTTCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTAATTTTTAATATATTTTCACAAAATTGACAGCACTCTTCCTT  787

seq1  GTACTGGAGTGAATACTTGTCGAATCTGTTTCCCAACACAGGTAGGAATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAGTGAATACTTGTCGAATCTGTTTCCCAACACAGGTAGGAATG  837

seq1  CAGGGTCTTTGTTACATGTCTTATTTTCTCATACCCAAGTATTTCGAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTTGTTACATGTCTTATTTTCTCATACCCAAGTATTTCGAATA  887

seq1  CCTCAGGCAATTTATGTTTCATACTTTTTAGGCATCTTTCATCAAATTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCAATTTATGTTTCATACTTTTTAGGCATCTTTCATCAAATTTT  937

seq1  CTCCTGATAGTAATGTTGTTAAATCAATTACACCTTCTATCAATTGATAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATAGTAATGTTGTTAAATCAATTACACCTTCTATCAATTGATAT  987

seq1  GCATCAGTGGAAAACTTTATCCCACACCTCTTTGACATGTAATTTTAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTGGAAAACTTTATCCCACACCTCTTTGACATGTAATTTTAAAC  1037

seq1  AAGTGTACAGAAAAGAATATAATAGTACAACAGGATATGGTACGTGCTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACAGAAAAGAATATAATAGTACAACAGGATATGGTACGTGCTGC  1087

seq1  TAAGTTGTTTGATAACATCCATAACATATTTCCCCTTTTTATGGATAGTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTTGATAACATCCATAACATATTTCCCCTTTTTATGGATAGTG  1137

seq1  GTATGCATCCATTGACCTTATCCAAGAGAATTC  1178
      |||||||||||||||||||||||||||||||||
seq2  GTATGCATCCATTGACCTTATCCAAGAGAATTC  1170


seq1: chr16_81366407_81367562
seq2: B6Ng01-307G20.g_65_1217

seq1  GAATTCCAAATTAGAAAACAACATACCAGGAAGAAAGTTAAATTTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTAGAAAACAACATACCAGGAAGAAAGTTAAATTTTCTGT  50

seq1  CATATTTCATTAGTGGCTTAACTGGCTTTTTATTGTAAGTTAATGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCATTAGTGGCTTAACTGGCTTTTTATTGTAAGTTAATGGTTTT  100

seq1  ATTTTATGTTTTAGTTGTAAGAACCAGTGAACATAGAAACAAATAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTTTTAGTTGTAAGAACCAGTGAACATAGAAACAAATAGTGAG  150

seq1  TCAGATAAAAAGATCACCCTGACAAAATTATATTCAACAAAAGAACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAAAAGATCACCCTGACAAAATTATATTCAACAAAAGAACTTGA  200

seq1  TGCTAACTGTGGAATATGAAGCTAAATGCACTGAAAATGACATGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTGTGGAATATGAAGCTAAATGCACTGAAAATGACATGTTTTTA  250

seq1  AACAATGTGTTCCATGTTTAAAGATGAGGTTATCTTTTTCCTCCTAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTTCCATGTTTAAAGATGAGGTTATCTTTTTCCTCCTAGGGC  300

seq1  ATCATCAGGCTTAGTAGCAAGGACACTTTAATATTACATTTTGGTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGGCTTAGTAGCAAGGACACTTTAATATTACATTTTGGTTATAC  350

seq1  CTTTCTACTCTATATTCTGTTTTCTTCTTTGTGTGTTGTTCAGCAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTCTATATTCTGTTTTCTTCTTTGTGTGTTGTTCAGCAGTTTT  400

seq1  ATAATTTACATAATGACTGTTGTCATTTTCACCTCTATTCTCTTCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACATAATGACTGTTGTCATTTTCACCTCTATTCTCTTCCCTTG  450

seq1  TATCTTCTTTGCAGACTCCCACGCAGAGCATCTTTTAATCAATGAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTTGCAGACTCCCACGCAGAGCATCTTTTAATCAATGAGATGC  500

seq1  TCCCTGTCTTTCAACTTCAACTCTCTAAGAGAGCATTTTGATACCTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTTTCAACTTCAACTCTCTAAGAGAGCATTTTGATACCTCTCA  550

seq1  GGGAAATAATATCAACCTTACATTGATGTTTATAATGGCAAATGTACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAATATCAACCTTACATTGATGTTTATAATGGCAAATGTACTCT  600

seq1  TTCCTAATCACAGGTTTTAAATATTTAGATATTTCTTCTTTAGCTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATCACAGGTTTTAAATATTTAGATATTTCTTCTTTAGCTATTTC  650

seq1  TTCTTTTGCAATGCATATATGTAAATAATGAAATTAATTTTCTAGGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGCAATGCATATATGTAAATAATGAAATTAATTTTCTAGGTAAT  700

seq1  ACTAATTTTCACCTTTTAAGCAATAGGACTTTCATTAAAATGAAATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTCACCTTTTAAGCAATAGGACTTTCATTAAAATGAAATGAAA  750

seq1  AGAGAGGCTTTTGTAATATTTGCTCTTAACATGTATGTAGAGACTTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCTTTTGTAATATTTGCTCTTAACATGTATGTAGAGACTTGACT  800

seq1  GCTTCTGTGGATAATCACCCTGTTCATTTCCAATTACATCCAATTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTGGATAATCACCCTGTTCATTTCCAATTACATCCAATTTGAAA  850

seq1  AAAGCAATCAGATACTTAAGTTGACTTTAATCTCTAGGCCCAAAGATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCAGATACTTAAGTTGACTTTAATCTCTAGGCCCAAAGATTTT  900

seq1  ACTTTAGATTGATATGAAAAAGTTGGAATATT-AAAAAAATAAAATAGAT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTTTAGATTGATATGAAAAAGTTGGAATATTAAAAAAAATAAAATAGAT  950

seq1  AGACTCGCGACTCCAGGCATATTTGTTATTCTGTTCTCACCATGTTTTTG  999
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  AGACTCGCGACTCCAGGCATATTTG-TATTCTGTTCTCACCATG-TTTTG  998

seq1  ATGGCAAACCTTTTT-AATGACACTG-CTGTCATTATCTATGGTTGGTGA  1047
      ||||||| ||||||| |||||||||| |||||| ||||||||||||||||
seq2  ATGGCAACCCTTTTTAAATGACACTGCCTGTCA-TATCTATGGTTGGTGA  1047

seq1  ATTCTAGTATGTATGTATATATATGTATACACACACACACACACACTGTG  1097
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  A-TCTAGTATGTATGTATATATATGTATACACACACACACAC-CACTGTG  1095

seq1  AATTTAATCTTTAAGTTCAGCTCTCATCTCACAAAATATG-CATATAG-A  1145
      |  || |||||||   |||||||||||||||||||||||| ||||||| |
seq2  A--TTCATCTTTA--GTCAGCTCTCATCTCACAAAATATGCCATATAGAA  1141

seq1  TCCA-TTATGAG  1156
      |||| |||||||
seq2  TCCATTTATGAG  1153


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