BAC Information

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BAC

Clone NameB6Ng01-307H12
Chromosome16 (Build37)
Map Location 90,681,360 - 90,832,418
singlet/doubletdoublet
Overlap gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream geneLOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307H12.bB6Ng01-307H12.g
ACCGA100232GA100233
length1,09785
definitionB6Ng01-307H12.b B6Ng01-307H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,681,360 - 90,682,460)(90,832,334 - 90,832,418)
sequence
gaattcaaatgttaaattctgtaccccaagatctggttcctccaagacag
ggagaccctcctgtatgccagcttttgttgtataaaccttgccaccacca
ccccccctaaattatccctgattggttaatacagatgcctccagcctggg
ctgggcagaagaaaggaggctagttgaaggctcctgggcttggggtctca
ggcagagaccaggaggagaggagaagaaaggacagatgcaggggaagaag
gaagctaccatggggtcggtggatcatgagcacgtgactgtgagctctgg
cctgttggagtgagaatggcaagggacatctccgggttatggacaggaaa
aagacaaagtagcacagaccgttgatatctgcccagttctagtgctttaa
gactttttataaatataatggtttgtgtcttttatttggggactaaatga
cctaaggtggggtagaaaccctcaaataaaatttacagcaagtaacagat
tctgaggtctgacatgttgccatctttgaaggccattgttcgacttaacg
caggaagtatggaaggaaacattttgagcaattttcattccagatgcccc
agggagacaggaatgggctagctgatggttctgacctttgccaagtcacc
agtgtggggatttctgtgtggaaggacccgtttccttattttgttgagta
ctcctgtccttgaccccacactccccacctctgaggatcctggtgaccag
gtccacccgcggaagcctgaaagccttccccacgggaaagacactgagcc
tccaccgtgatcccagagcatccctcagagttctgcatctttgtccatgt
gtgagacctgcctgatacgtcagcccccagtccatgggcagctctgaaaa
aagtcactcccattgggccagacacttggtggaagcaggacagtgagtat
cccaagaggcacatttgggtccccaccaacttatggggtttagtggtccc
attcacacctttggatttggttttgctttgtttgcttgcttgcttgttgt
ttgttgtttgttgttttggttagaagacaaccccatgacatcatttt
ccaaagagcacattgatctttgacttggcaggagaaagtcgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90681360_90682460
seq2: B6Ng01-307H12.b_45_1141

seq1  GAATTCAAATGTTAAATTCTGTACCCCAAGATCTGGTTCCTCCAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTTAAATTCTGTACCCCAAGATCTGGTTCCTCCAAGACAG  50

seq1  GGAGACCCTCCTGTATGCCAGCTTTTGTTGTATAAACCTTGCCACCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCTCCTGTATGCCAGCTTTTGTTGTATAAACCTTGCCACCACCA  100

seq1  CCCCCCCTAAATTATCCCTGATTGGTTAATACAGATGCCTCCAGCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTAAATTATCCCTGATTGGTTAATACAGATGCCTCCAGCCTGGG  150

seq1  CTGGGCAGAAGAAAGGAGGCTAGTTGAAGGCTCCTGGGCTTGGGGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGAAGAAAGGAGGCTAGTTGAAGGCTCCTGGGCTTGGGGTCTCA  200

seq1  GGCAGAGACCAGGAGGAGAGGAGAAGAAAGGACAGATGCAGGGGAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGACCAGGAGGAGAGGAGAAGAAAGGACAGATGCAGGGGAAGAAG  250

seq1  GAAGCTACCATGGGGTCGGTGGATCATGAGCACGTGACTGTGAGCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACCATGGGGTCGGTGGATCATGAGCACGTGACTGTGAGCTCTGG  300

seq1  CCTGTTGGAGTGAGAATGGCAAGGGACATCTCCGGGTTATGGACAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGAGTGAGAATGGCAAGGGACATCTCCGGGTTATGGACAGGAAA  350

seq1  AAGACAAAGTAGCACAGACCGTTGATATCTGCCCAGTTCTAGTGCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGTAGCACAGACCGTTGATATCTGCCCAGTTCTAGTGCTTTAA  400

seq1  GACTTTTTATAAATATAATGGTTTGTGTCTTTTATTTGGGGACTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTATAAATATAATGGTTTGTGTCTTTTATTTGGGGACTAAATGA  450

seq1  CCTAAGGTGGGGTAGAAACCCTCAAATAAAATTTACAGCAAGTAACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTGGGGTAGAAACCCTCAAATAAAATTTACAGCAAGTAACAGAT  500

seq1  TCTGAGGTCTGACATGTTGCCATCTTTGAAGGCCATTGTTCGACTTAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCTGACATGTTGCCATCTTTGAAGGCCATTGTTCGACTTAACG  550

seq1  CAGGAAGTATGGAAGGAAACATTTTGAGCAATTTTCATTCCAGATGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTATGGAAGGAAACATTTTGAGCAATTTTCATTCCAGATGCCCC  600

seq1  AGGGAGACAGGAATGGGCTAGCTGATGGTTCTGACCTTTGCCAAGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGGAATGGGCTAGCTGATGGTTCTGACCTTTGCCAAGTCACC  650

seq1  AGTGTGGGGATTTCTGTGTGGAAGGACCCGTTTCCTTATTTTGTTGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGGATTTCTGTGTGGAAGGACCCGTTTCCTTATTTTGTTGAGTA  700

seq1  CTCCTGTCCTTGACCCCACACTCCCCACCTCTGAGGATCCTGGTGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCTTGACCCCACACTCCCCACCTCTGAGGATCCTGGTGACCAG  750

seq1  GTCCACCCGCGGAAGCCTGAAAGCCTTCCCCACGGGAAAGACACTGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCGCGGAAGCCTGAAAGCCTTCCCCACGGGAAAGACACTGAGCC  800

seq1  TCCACCGTGATCCCAGAGCATCCCTCAGAGTTCTGCATC-TTGTCCATGT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCACCGTGATCCCAGAGCATCCCTCAGAGTTCTGCATCTTTGTCCATGT  850

seq1  GTGAGACCTGCCTGATACGTCAG-CCCCAGTCCAT-GGCAGCTCTG-AAA  896
      ||||||||||||||||||||||| ||||||||||| |||||||||| |||
seq2  GTGAGACCTGCCTGATACGTCAGCCCCCAGTCCATGGGCAGCTCTGAAAA  900

seq1  AAGTCACTCCCATT-GGCCAGACACTTGGT-GAAGCA-GACAGTGAGTAT  943
      |||||||||||||| ||||||||||||||| |||||| ||||||||||||
seq2  AAGTCACTCCCATTGGGCCAGACACTTGGTGGAAGCAGGACAGTGAGTAT  950

seq1  CCCAAGAGGCACATT--GGT-CCCACCA--CTATGGGGTTTAGT-GTCCC  987
      |||||||||||||||  ||| |||||||   ||||||||||||| |||||
seq2  CCCAAGAGGCACATTTGGGTCCCCACCAACTTATGGGGTTTAGTGGTCCC  1000

seq1  ATTTCACAACCTTTGG-TTTTGTTTTGCTTTGTTTTGCTTTGTTTTGCTT  1036
      | ||||| |||||||| ||| ||||||||||| |||||      ||||||
seq2  A-TTCAC-ACCTTTGGATTTGGTTTTGCTTTG-TTTGC------TTGCTT  1041

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAATGAAAGACAAAC  1086
        || |  |||||| | | |||||||| || |         ||||||| |
seq2  GCTTGTTGTTTGTTGTTTGTTGTTTTGGTTAG---------AAGACAACC  1082

seq1  CCATGACATCATTTT  1101
      |||||||||||||||
seq2  CCATGACATCATTTT  1097

seq1: chr16_90832334_90832418
seq2: B6Ng01-307H12.g_71_155 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACGACTT  50

seq1  TCTCCTGCCAAGTCAAAGATCAATGTGCTCTTTGG  85
      |||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCAAGTCAAAGATCAATGTGCTCTTTGG  85