BAC Information

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BAC

Clone NameB6Ng01-307P23
Chromosome16 (Build37)
Map Location 33,016,703 - 33,212,804
singlet/doubletdoublet
Overlap geneIqcg, Rpl35a, Lmln, LOC638791, Osbpl11
Upstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
Downstream geneSnx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307P23.bB6Ng01-307P23.g
ACCGA100618GA100619
length1,078921
definitionB6Ng01-307P23.b B6Ng01-307P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,016,703 - 33,017,774)(33,212,291 - 33,212,804)
sequence
gaattcacttttgcttataatagtttttcactttaatcatatggcataaa
gtcagagtcagatgtgtcaggagtttttacgacttaactatgagccagtt
agctgctttctggagcgagaagaaggatgctcacacagctactcaacttg
gctccccacagtcccgtctgaagaggtcctacagccatgtgatagccctc
actggggtgtgaaaactagagtatcagacagtgagaactccctaggtctg
tgagccaggaggtgggcgctgggtcagcacccccagtgtctcgaggcctg
agaaggctcagcagaaactggttacttctttctcctcttctccttctcct
tgcctttcgagtctttgctgtcatctttatctttcttgggcattttgaaa
ttgccaatttccttccggaccactgaccctcgccaccaggcctggagctg
gaagaaagaagcaggggaattcatctctgtgtgctcaacagcactcatct
ttctacagaggagagaaccaacagtcacttgtgtctcaggaacatggggt
atggacgtggccaggctgctgtcagtacagctacctgaaagtgaagtgtg
ctaggccaagtcttccttcagactaagaccctcaacctctgtgtagttct
tgctcccttggtaaacatctcacacctcacagtcactggacacaaaagga
gtgaatgtctgtctcctgtgcccagtcagggacgaaccaacaagtctcag
tggttgacagtgcatcacacatccttaaggagctgctaagcaggtaggat
tcagacagctccttgaatgtctctgtcagtttaatgcaactgttcttgtc
tagattataaaatcagactagcctactgagagcacaagggatccactgct
gagaacagaaggtctacggttagctctccactcaaaattgaatcttgaca
aatgggaaaacagaagcttgatcaacattactaattaaacaccagatttt
cctaatagtaagatcaaggtgagtgagtgaagtctcccttactttggtat
ttttgggtttggttgggttgggtttggg
gaattccattaaaaaaaaagggaggggacatctccacccttggatgcctg
ttaccccatgtggtaagaacataccacaaaaggagaagacagagctggga
cacaggagctcagtggtagagcatttgcttagcatgaataagtcctgtgt
tcaccctaaggactgagggatgggtggcggtgactacaggctctaaacaa
cacagatgcaaaaagaaaacctaaagcattcaatcctttatgataaagtg
ccctgttaagttaggtataggatcatactcagcatgataaaaactacata
caacaaagtcatgaccaacatcctattaaatgaggaaaaaatctgaagta
tttctgctgacatcaagaacaaggaaagtgtgtccactctcattaccact
tttatttaatgtaattgttgaaattaggacgaaagaaataaaacatggga
aatcaaattgttccttttgctcatgatatgtttctatacttagaaaatcc
taacaatcctaccaaaagatttttagaactaaaaaagggctggaggtgta
gctcagtggtagggtgcttatcaaccatacaagggattccaggttcattc
tctagcactcattgcaagacaagagtacagaatgcctgcaacagcagcac
ttgggaggtcagggcaagaagacctaagtttagaaatcacccaggtagat
attgcaagactctatctcaaaatgatgatggtggtaatagtaatgacaat
gaggacatggcagtggagagatggctcagtgattaaaagccttgctaatc
tttccaaaggacccaagtttggttcccagaacccataacaggcaactcct
aactacctacaggtgaatcagacatttcctgacctctaggggcacccaca
catgtaacacacacacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33016703_33017774
seq2: B6Ng01-307P23.b_48_1125

seq1  GAATTCACTTTTGCTTATAATAGTTTTTCACTTTAATCATATGGCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTGCTTATAATAGTTTTTCACTTTAATCATATGGCATAAA  50

seq1  GTCAGAGTCAGATGTGTCAGGAGTTTTTACGACTTAACTATGAGCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTCAGATGTGTCAGGAGTTTTTACGACTTAACTATGAGCCAGTT  100

seq1  AGCTGCTTTCTGGAGCGAGAAGAAGGATGCTCACACAGCTACTCAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTCTGGAGCGAGAAGAAGGATGCTCACACAGCTACTCAACTTG  150

seq1  GCTCCCCACAGTCCCGTCTGAAGAGGTCCTACAGCCATGTGATAGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACAGTCCCGTCTGAAGAGGTCCTACAGCCATGTGATAGCCCTC  200

seq1  ACTGGGGTGTGAAAACTAGAGTATCAGACAGTGAGAACTCCCTAGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTGTGAAAACTAGAGTATCAGACAGTGAGAACTCCCTAGGTCTG  250

seq1  TGAGCCAGGAGGTGGGCGCTGGGTCAGCACCCCCAGTGTCTCGAGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGAGGTGGGCGCTGGGTCAGCACCCCCAGTGTCTCGAGGCCTG  300

seq1  AGAAGGCTCAGCAGAAACTGGTTACTTCTTTCTCCTCTTCTCCTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCAGCAGAAACTGGTTACTTCTTTCTCCTCTTCTCCTTCTCCT  350

seq1  TGCCTTTCGAGTCTTTGCTGTCATCTTTATCTTTCTTGGGCATTTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCGAGTCTTTGCTGTCATCTTTATCTTTCTTGGGCATTTTGAAA  400

seq1  TTGCCAATTTCCTTCCGGACCACTGACCCTCGCCACCAGGCCTGGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATTTCCTTCCGGACCACTGACCCTCGCCACCAGGCCTGGAGCTG  450

seq1  GAAGAAAGAAGCAGGGGAATTCATCTCTGTGTGCTCAACAGCACTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAGCAGGGGAATTCATCTCTGTGTGCTCAACAGCACTCATCT  500

seq1  TTCTACAGAGGAGAGAACCAACAGTCACTTGTGTCTCAGGAACATGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGAGGAGAGAACCAACAGTCACTTGTGTCTCAGGAACATGGGGT  550

seq1  ATGGACGTGGCCAGGCTGCTGTCAGTACAGCTACCTGAAAGTGAAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGTGGCCAGGCTGCTGTCAGTACAGCTACCTGAAAGTGAAGTGTG  600

seq1  CTAGGCCAAGTCTTCCTTCAGACTAAGACCCTCAACCTCTGTGTAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAAGTCTTCCTTCAGACTAAGACCCTCAACCTCTGTGTAGTTCT  650

seq1  TGCTCCCTTGGTAAACATCTCACACCTCACAGTCACTGGACACAAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTTGGTAAACATCTCACACCTCACAGTCACTGGACACAAAAGGA  700

seq1  GTGAATGTCTGTCTCCTGTGCCCAGTCAGGGACGAACCAACAAGTCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTCTGTCTCCTGTGCCCAGTCAGGGACGAACCAACAAGTCTCAG  750

seq1  TGGTTGACAGTGCATCACACATCCTTAAGGAGCTGCTAAGCAGGTAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACAGTGCATCACACATCCTTAAGGAGCTGCTAAGCAGGTAGGAT  800

seq1  TCAGACAGCTCCTTGAATGTCTCTGTCAGTTTAATGCAACTGTTCTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCTCCTTGAATGTCTCTGTCAGTTTAATGCAACTGTTCTTGTC  850

seq1  TAGATTATAAAATCAGACTAGCCTACTGAGAGCAC-AGGGATCCACTGCT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGATTATAAAATCAGACTAGCCTACTGAGAGCACAAGGGATCCACTGCT  900

seq1  GAGAACAGAAGGTCTACGGTTAGCTCTCCACTCAAAATTGAATCTTGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAAGGTCTACGGTTAGCTCTCCACTCAAAATTGAATCTTGACA  950

seq1  AAT-GGAAAACAGAAGCTTGATCAACATTTACTAATTAAACACCAGATTT  998
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGGGAAAACAGAAGCTTGATCAACA-TTACTAATTAAACACCAGATTT  999

seq1  TCCTAATAGTAAGATCAAAGGTGAGTGAGTG-AGTCTCCCTTACTTT-GT  1046
      |||||||||||||||| |||||||||||||| ||||||||||||||| ||
seq2  TCCTAATAGTAAGATC-AAGGTGAGTGAGTGAAGTCTCCCTTACTTTGGT  1048

seq1  ATTTTTGG--TTGGTTGG--TTGGTTTGGG  1072
      ||||||||  ||||||||  | ||||||||
seq2  ATTTTTGGGTTTGGTTGGGTTGGGTTTGGG  1078

seq1: chr16_33212291_33212804
seq2: B6Ng01-307P23.g_65_578 (reverse)

seq1  TGGTAGGATTGTTAGGATTTTCTAAGTATAGAAACATATCATGAGCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATTGTTAGGATTTTCTAAGTATAGAAACATATCATGAGCAAAA  50

seq1  GGAACAATTTGATTTCCCATGTTTTATTTCTTTCGTCCTAATTTCAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTTGATTTCCCATGTTTTATTTCTTTCGTCCTAATTTCAACAA  100

seq1  TTACATTAAATAAAAGTGGTAATGAGAGTGGACACACTTTCCTTGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAAATAAAAGTGGTAATGAGAGTGGACACACTTTCCTTGTTCTT  150

seq1  GATGTCAGCAGAAATACTTCAGATTTTTTCCTCATTTAATAGGATGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGCAGAAATACTTCAGATTTTTTCCTCATTTAATAGGATGTTGG  200

seq1  TCATGACTTTGTTGTATGTAGTTTTTATCATGCTGAGTATGATCCTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTTTGTTGTATGTAGTTTTTATCATGCTGAGTATGATCCTATAC  250

seq1  CTAACTTAACAGGGCACTTTATCATAAAGGATTGAATGCTTTAGGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAACAGGGCACTTTATCATAAAGGATTGAATGCTTTAGGTTTTC  300

seq1  TTTTTGCATCTGTGTTGTTTAGAGCCTGTAGTCACCGCCACCCATCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCATCTGTGTTGTTTAGAGCCTGTAGTCACCGCCACCCATCCCTC  350

seq1  AGTCCTTAGGGTGAACACAGGACTTATTCATGCTAAGCAAATGCTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTAGGGTGAACACAGGACTTATTCATGCTAAGCAAATGCTCTACC  400

seq1  ACTGAGCTCCTGTGTCCCAGCTCTGTCTTCTCCTTTTGTGGTATGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCCTGTGTCCCAGCTCTGTCTTCTCCTTTTGTGGTATGTTCTT  450

seq1  ACCACATGGGGTAACAGGCATCCAAGGGTGGAGATGTCCCCTCCCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGGGTAACAGGCATCCAAGGGTGGAGATGTCCCCTCCCTTTTT  500

seq1  TTTTAATGGAATTC  514
      ||||||||||||||
seq2  TTTTAATGGAATTC  514