BAC Information

Click to search

BAC

Clone NameB6Ng01-309F03
Chromosome12 (Build37)16 (Build37)
Map Location 107,998,226 - 107,999,07030,396,116 - 30,396,528
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAk7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309F03.bB6Ng01-309F03.g
ACCGA101590GA101591
length1,045910
definitionB6Ng01-309F03.b B6Ng01-309F03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,998,226 - 107,999,070)(30,396,116 - 30,396,528)
sequence
gaattcagcctcttcagacttctagaacacaggggggagattctttgcaa
taatataaaacaaaatatctcttgcccaatactcaaaggttttttttttt
tttcttagctgacccatgaggtgaatcttcactaccaacatttttcttga
cattctgatcttcaaattttccaccagaaattgccatttaacttacagca
ttgtagggttttgttttgtttttaatattcacctctatactgttctacat
tcctcccataaactcattccagcctaagaatgacacagccaagtttgtca
agtgacccccttactgctcatttcaattttcttatcaggaagttttgccc
atctctatggtcaagtacctgacagaaacaagtgaatggaggagggattt
gttttggcatagagtttaaaagtattttagtctatcacgtcaggggatga
cagcatattctattgggatagtactgtatgatatagttcctcagttggca
tctagaccaggaagtagagacagacaagaaccagaagcaggcatatgcct
caaaggtcagccccctgtggctcacctcattcagtcatgcctactattgt
aaagtttctacaacatatcatgacagagctactatctagggatggagtat
tcaaacaggagcctggatgggacatttcaccttcaaactgtagcatggcc
aaaacttaaatggattaaagaattaaaggaacaaaacaaaaaacaattta
aagaaacaaagcagctgaattggatttaaaaaacaatagttcagctatgt
gttgctaatatttctaaggatatttgtattcagaagagaaaaggtggaga
aaggtattccatgcaatgctgggggagatggcttagtgactgggagtaat
ttctgctcttctatgggattggagttcagtttctcagcattcttactggc
tgtttcacactacctgtactccagacgatctgatgtcccttttgacctct
tgtgagcacctggtacaatgtgcaacatactgggccatccaccca
gaattctacccccctatagctccaattccagaggatctgaccctttgcca
actttcacagggatcaagcatgtacatggtagacacgcatgcatacaggc
aaaacatttatgcacagtcaatgaaataaataaatctaaaaaagtctatc
caatgttttagttttatgtatataaataaacattttaatttaaaccttaa
tttattaattcactaagtcttaagctgtgactcaaccctaccggaagtct
attttaaaggatttctacataataaaataatcaaagagcccaggcttagt
atgtataaaagtttgtagaaatcctctagtttttatgctaattttaaaca
catgatacaaaaaaaaaagagttggctcagaagaacaatacattggtcag
caatacttcttctggaagacatgagttttatttatttatttatttattta
tttatttatttatttatttttggtttttcaagacagggcttctctgtata
gacctggctgtcctggaactcactttgtagaccaggctggcctcaaactc
agaaatctgcctgactctgcctcccaagtgctgggattaaaggtgtgtgc
caccattgcctggtgacatgagttttaaaatggaaatctcagtgctgggc
aaaaactaccagttggggttggagagatgcccagaaggacagaggccacc
acttctgcccactgtgactagatgataagaccgtatggctgaagattcct
cacagtttgggttaaaggatacagacaaatcaatcttagcttcaaactgc
ccaggactctcttccttcatgttaatcttcccagtgctagaggatgcttt
gcaggctcctgggaaagaaaacgctttcagagctcttacccagccccaaa
tcaacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107998226_107999070
seq2: B6Ng01-309F03.b_244_1089

seq1  ATTGTAGGGTTTTGTTTTGTTTTTAATATTCACCTCTATACTGTTCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGGTTTTGTTTTGTTTTTAATATTCACCTCTATACTGTTCTACA  50

seq1  TTCCTCCCATAAACTCATTCCAGCCTAAGAATGACACAGCCAAGTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCATAAACTCATTCCAGCCTAAGAATGACACAGCCAAGTTTGTC  100

seq1  AAGTGACCCCCTTACTGCTCATTTCAATTTTCTTATCAGGAAGTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCCCCTTACTGCTCATTTCAATTTTCTTATCAGGAAGTTTTGCC  150

seq1  CATCTCTATGGTCAAGTACCTGACAGAAACAAGTGAATGGAGGAGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTATGGTCAAGTACCTGACAGAAACAAGTGAATGGAGGAGGGATT  200

seq1  TGTTTTGGCATAGAGTTTAAAAGTATTTTAGTCTATCACGTCAGGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCATAGAGTTTAAAAGTATTTTAGTCTATCACGTCAGGGGATG  250

seq1  ACAGCATATTCTATTGGGATAGTACTGTATGATATAGTTCCTCAGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATTCTATTGGGATAGTACTGTATGATATAGTTCCTCAGTTGGC  300

seq1  ATCTAGACCAGGAAGTAGAGACAGACAAGAACCAGAAGCAGGCATATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGACCAGGAAGTAGAGACAGACAAGAACCAGAAGCAGGCATATGCC  350

seq1  TCAAAGGTCAGCCCCCTGTGGCTCACCTCATTCAGTCATGCCTACTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCAGCCCCCTGTGGCTCACCTCATTCAGTCATGCCTACTATTG  400

seq1  TAAAGTTTCTACAACATATCATGACAGAGCTACTATCTAGGGATGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCTACAACATATCATGACAGAGCTACTATCTAGGGATGGAGTA  450

seq1  TTCAAACAGGAGCCTGGATGGGACATTTCACCTTCAAACTGTAGCATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGGAGCCTGGATGGGACATTTCACCTTCAAACTGTAGCATGGC  500

seq1  CAAAACTTAAATGGATTAAAGAATTAAAGGAACAAAACAAAAAACAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTAAATGGATTAAAGAATTAAAGGAACAAAACAAAAAACAATTT  550

seq1  AAAGAAACAAAGCAGCTGAATTGGATTTAAAAAACAATAGTTCAGCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACAAAGCAGCTGAATTGGATTTAAAAAACAATAGTTCAGCTATG  600

seq1  TGTTGCTAATATTTCTAAGGATATTTGTATTCAGAAGAGAAAAGGTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAATATTTCTAAGGATATTTGTATTCAGAAGAGAAAAGGTGGAG  650

seq1  AAAGGTATTCCATGCAATGCT-GGGGAGATGGCTTAGTGACTGGGAGTAA  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGGTATTCCATGCAATGCTGGGGGAGATGGCTTAGTGACTGGGAGTAA  700

seq1  TTTCTGCTCTTCTATGGGATTGGAGTTCAG-TTCTCAGCATTCTTACTGG  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCTGCTCTTCTATGGGATTGGAGTTCAGTTTCTCAGCATTCTTACTGG  750

seq1  CTGTTTCACAACTACCTGTAACTCCAGACGATCTGATGTTCCTTTTTGAC  798
      ||||||||| ||||||||| |||||||||||||||||| ||| |||||||
seq2  CTGTTTCAC-ACTACCTGT-ACTCCAGACGATCTGATG-TCCCTTTTGAC  797

seq1  CTC-TGTGAGCACCT-GTACATATGTGC-ACATACTGGCCCATCCACCCA  845
      ||| ||||||||||| ||||| |||||| ||||||||| |||||||||||
seq2  CTCTTGTGAGCACCTGGTACA-ATGTGCAACATACTGGGCCATCCACCCA  846

seq1: chr16_30396116_30396528
seq2: B6Ng01-309F03.g_423_669

seq1  AAAAAAAAAAGAGTTGGGTCAGTGAAATGGCATTCTTTGTTTAGTATGTT  50
      ||||||||||||||||| |||  |||     || | ||| | || |    
seq2  AAAAAAAAAAGAGTTGGCTCA--GAAGAACAATACATTGGTCAGCA----  44

seq1  TGTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  100
                                    |||   ||   | | |||||
seq2  ------------------------------ATA---CT---TCTTCTGGA  58

seq1  ACTCACTTTGGTTTTTTTGTTGTTGTTGTTGTTTTGATTGATTGATTGAT  150
      |   || |  ||||| ||             | || ||| ||| ||| ||
seq2  A--GACATGAGTTTTATT-------------TATTTATTTATTTATTTAT  93

seq1  TGATTGATTGATTGATTATATGTAAGTACCCTGTAGCTGCCTTCAGACAC  200
      | ||| ||| ||| ||| |  ||                           
seq2  TTATTTATTTATTTATTTTTGGT---------------------------  116

seq1  TCCAGAAGAGGGTGCCAGATCTCATTACAGATGGTTGTGAGCCATCATGT  250
                         | |||  ||||                    
seq2  ------------------TTTTCAAGACAG--------------------  128

seq1  GGTTGCTGGGAATTGAACTCAGAACCTTCGGAAGAGCAGACAATGCTCTT  300
      || | ||  | || || ||                               
seq2  GGCTTCTCTGTATAGACCT-------------------------------  147

seq1  AACCGCTGAGCCATCTCTCCAGCCCCCTGGAGCTCACTTTGTAGACCAGG  350
          ||||                 |||||| ||||||||||||||||||
seq2  ---GGCTG----------------TCCTGGAACTCACTTTGTAGACCAGG  178

seq1  CTGGCCTCGAACTCAGAAATCCGC------CTGCCTCCCAAGTGCTGGGA  394
      |||||||| |||||||||||| ||      ||||||||||||||||||||
seq2  CTGGCCTCAAACTCAGAAATCTGCCTGACTCTGCCTCCCAAGTGCTGGGA  228

seq1  TTAAAGGCGTGCGCCACCA  413
      ||||||| ||| |||||||
seq2  TTAAAGGTGTGTGCCACCA  247