BAC Information

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BAC

Clone NameB6Ng01-309L10
Chromosome16 (Build37)
Map Location 91,108,014 - 91,288,568
singlet/doubletdoublet
Overlap geneH3f3a-ps2, Olig2, Olig1
Upstream geneLOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik
Downstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L10.bB6Ng01-309L10.g
ACCGA101886GA101887
length833146
definitionB6Ng01-309L10.b B6Ng01-309L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,287,740 - 91,288,568)(91,108,014 - 91,108,158)
sequence
gaattcatttaaaaccagtagcactctgcaaatgcaagctgcctacaccc
tgcaggctccccctgccctgaggggggagggagaggaacagagcagtgtt
tctcaacctgtgggttgggaccccctctgcaggggttgcagaagatcgtc
tgaaaacacagatatttacaattcataacagtagcaaaattacagttaca
aagtagcaacgaaaataattttatggttgggtgtcaccacaacataaaga
actgtattaaacggtcgaagcagttggaaggctgagaaccgctgtggtag
agtgtcttagccgtatgtctttaaaattgaacattcatgaattcattgat
cctcacagtcacagtcattctcaaggatagagcctctgttgtgtggtttt
agaactctatttaagccggaactaaaccccaaatagaacctatttgggag
taataaactacacgtgtctgttttgtttaaattatttttattttggtaaa
atatccataatgtgaaacttaccatctttaaaatctttttctttgtttta
gtaatcccatcgattgctgagatttttggttgctatttttttaaatataa
ggtgacaaagagtttgcaaaatacaatcttgtacacaggactgaaagaaa
taatttttcttaaaaattttttctttagcatggttgactaatattattat
ttaatttagagagattaggtgccaaactaatagtaatgttttatatattt
atatgtattataatatataaatatctatacatatgatataaatatatata
taatatctattactatattatataatatattat
catgaataataatgaggacgcaaactgtcaagcagagagcctgcctaatc
acgcggaaatcttgcactgtcacagcccctccccttcccataaagctgct
tcagctccatccttgcatcagcatcacttaaccatctcccccccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91287740_91288568
seq2: B6Ng01-309L10.b_51_883 (reverse)

seq1  ATAATATATTATATATTATATGTATAGATATTATATTTTATATTTATATC  50
      ||||||||||||||| ||||   |||||||||||| | ||||||||||||
seq2  ATAATATATTATATAATATAGTAATAGATATTATA-TATATATTTATATC  49

seq1  ATATGTATAGATA-TTATATATTAT-ATACATAT-AATATAT-AAACATT  96
      ||||||||||||| ||||||||||| |||||||| ||||||| |||||||
seq2  ATATGTATAGATATTTATATATTATAATACATATAAATATATAAAACATT  99

seq1  ACTATTAGTTTGGCACCTAATCTCTCTAAATT-AATAATAATATTAGTCA  145
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTATTAGTTTGGCACCTAATCTCTCTAAATTAAATAATAATATTAGTCA  149

seq1  ACCATGCTAAAGAAAAAATTTTTAAGAAAAATTATTTCTTTCAGTCCTGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTAAAGAAAAAATTTTTAAGAAAAATTATTTCTTTCAGTCCTGT  199

seq1  GTACAAGATTGTATTTTGCAAACTCTTTGTCACCTTATATTTAAAAAAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGATTGTATTTTGCAAACTCTTTGTCACCTTATATTTAAAAAAAT  249

seq1  AGCAACCAAAAATCTCAGCAATCGATGGGATTACTAAAACAAAGAAAAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAAAAATCTCAGCAATCGATGGGATTACTAAAACAAAGAAAAAG  299

seq1  ATTTTAAAGATGGTAAGTTTCACATTATGGATATTTTACCAAAATAAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGATGGTAAGTTTCACATTATGGATATTTTACCAAAATAAAAA  349

seq1  TAATTTAAACAAAACAGACACGTGTAGTTTATTACTCCCAAATAGGTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAACAAAACAGACACGTGTAGTTTATTACTCCCAAATAGGTTCT  399

seq1  ATTTGGGGTTTAGTTCCGGCTTAAATAGAGTTCTAAAACCACACAACAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGTTTAGTTCCGGCTTAAATAGAGTTCTAAAACCACACAACAGA  449

seq1  GGCTCTATCCTTGAGAATGACTGTGACTGTGAGGATCAATGAATTCATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATCCTTGAGAATGACTGTGACTGTGAGGATCAATGAATTCATGA  499

seq1  ATGTTCAATTTTAAAGACATACGGCTAAGACACTCTACCACAGCGGTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAATTTTAAAGACATACGGCTAAGACACTCTACCACAGCGGTTCT  549

seq1  CAGCCTTCCAACTGCTTCGACCGTTTAATACAGTTCTTTATGTTGTGGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCAACTGCTTCGACCGTTTAATACAGTTCTTTATGTTGTGGTG  599

seq1  ACACCCAACCATAAAATTATTTTCGTTGCTACTTTGTAACTGTAATTTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAACCATAAAATTATTTTCGTTGCTACTTTGTAACTGTAATTTTG  649

seq1  CTACTGTTATGAATTGTAAATATCTGTGTTTTCAGACGATCTTCTGCAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTATGAATTGTAAATATCTGTGTTTTCAGACGATCTTCTGCAAC  699

seq1  CCCTGCAGAGGGGGTCCCAACCCACAGGTTGAGAAACACTGCTCTGTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGAGGGGGTCCCAACCCACAGGTTGAGAAACACTGCTCTGTTCC  749

seq1  TCTCCCTCCCCCCTCAGGGCAGGGGGAGCCTGCAGGGTGTAGGCAGCTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCCCCCTCAGGGCAGGGGGAGCCTGCAGGGTGTAGGCAGCTTG  799

seq1  CATTTGCAGAGTGCTACTGGTTTTAAATGAATTC  829
      ||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGAGTGCTACTGGTTTTAAATGAATTC  833

seq1: chr16_91108014_91108158
seq2: B6Ng01-309L10.g_74_218

seq1  CATGAATAATAATGAGGACGCAAACTGTCAAGCAGAGAGCCTGCCTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAATAATGAGGACGCAAACTGTCAAGCAGAGAGCCTGCCTAATC  50

seq1  ACGCGGAAATCTTGCACTGTCACAGCCCCTCCCCTTCCCATAAAGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGAAATCTTGCACTGTCACAGCCCCTCCCCTTCCCATAAAGCTGCT  100

seq1  TCAGCTCCATCCTTGCATCAGCATCACTTAACCATCTCCCCCCCC  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCATCCTTGCATCAGCATCACTTAACCATCTCCCCCCCC  145