BAC Information

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BAC

Clone NameB6Ng01-309M20
Chromosome16 (Build37)
Map Location 29,729,096 - 29,884,121
singlet/doubletdoublet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309M20.bB6Ng01-309M20.g
ACCGA101952GA101953
length1,148261
definitionB6Ng01-309M20.b B6Ng01-309M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,882,943 - 29,884,121)(29,729,096 - 29,729,356)
sequence
gaattctcagtcttcagatcctgccgactttgaacctacttgtatctgtg
tgatcacacacacaaacatacccacacagagatgcacacatgtgcgcaca
cacacacacacacacacaccactacacttcatttgccatagtacaccctc
ccccataaccctgtgcagtcaggaattcaattcaaagcaaaagggattct
tgaggaggggggaaaaaaaaaggaattccatagtggtgaggttagggtta
cagcccttgaagccagatggtttcctggagacgtcaggggagctgggtga
ggtggcatgggggacaccatccgggagccccaagagctaaagctggcact
tgcatgtggctggcatctgcttagtgctgtggatggtaccttcacagcat
ctccatctgcctccagcatccccagcctgggacctaagttgctgtattct
attctccacccatttctgaaaactgcctgctcgggtgctacttcaaagtc
ccctgggaatgccaagtcgccaattaagcctctttgaggcaggttctcat
tccttccccactaattgaaatgttactccttttactaaacccataaacca
cccaaacacaacggccttcctcatttgcattgtaacaatgtccctaatgt
ccttccaagagctttacgtagagccgaaccttttctctaccccccccaac
cccccaacggtcaaaagcaattccgaggcaaaggccttcatttccatccc
tatacagctgctcattagccaaggtggaataaattccctttattctggat
tcatttcccaggatgataatgtcttttttgtctcagccactgttcccaaa
ctggccttaattgctgatagtaattgagttaatgagtatttacagcccgg
taaggttaaaaaaggtctcctgtagtttatttgtgacattttatttaacc
tgcataaatcattacaagtgtccccgtgtattttctgcccttcatcttgt
ctctgtcctctggaagtaggtgagtagatgctcgtcttggggtagttctt
agttgcaagatggggacccaagcctcattcagctttctttcatcgagagg
aaggtccctcctcaagtgaagctaatgcctggtccacgagtctcccag
ctggccatctttggcgtccctttctgccagtctctgccagcaggtggcgc
tcacagctctcagacaacacaatgggcacctaggttctgaacttctggcc
ttccccccccccccccacctttggaatggcataatttgggagtcatctat
gggacgactgccaaggtcttaaattttctacgtggggtttggataatttt
ctccagacggcttggagaactggactggatgggaggaaaaggggcagtgg
tgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29882943_29884121
seq2: B6Ng01-309M20.b_49_1196 (reverse)

seq1  CTGGGAGACTGTGGAGCATCGTGGCCCCAGGCTATCTGCTTTCACT--GG  48
      |||||||||         ||||||  |||||| ||  || ||||||   |
seq2  CTGGGAGAC---------TCGTGG-ACCAGGC-ATTAGC-TTCACTTGAG  38

seq1  GAGAGGCCCTCCTCTCTGAATAGAAGAAAACCTGGATGAGGCTGGGTTCC  98
      ||| | || ||||||| ||   |||  ||| ||| |||||||| || |||
seq2  GAGGGACCTTCCTCTC-GA--TGAAAGAAAGCTGAATGAGGCTTGGGTCC  85

seq1  CCATCCCTGCAACCTAAGAACTACCCCCAGGACCGAGCCATCTACCTTCA  148
      |||| | ||||| |||||||||||||| ||   |||| |||||||  |||
seq2  CCAT-CTTGCAA-CTAAGAACTACCCCAAG--ACGAG-CATCTAC--TCA  128

seq1  CCCTACTTTCCCAAGAGACAGAGACAAGATGAAGGGCCAGAAAATTAACA  198
       |||||||  |||   |||||||||||||||||||| ||||||||  |||
seq2  -CCTACTT--CCAGAGGACAGAGACAAGATGAAGGG-CAGAAAAT--ACA  172

seq1  CGGGGACAACTTGTTAATGATTTTATTGCAGGTTAAATAAAATGTCACAA  248
      ||||||| ||||| |||||||||   ||||||||||||||||||||||||
seq2  CGGGGAC-ACTTG-TAATGATTT--ATGCAGGTTAAATAAAATGTCACAA  218

seq1  ATAAAACTACAGGAGACCTTTTTTAACCTTACC-GGCTGTAAATACTCAT  297
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AT-AAACTACAGGAGACCTTTTTTAACCTTACCGGGCTGTAAATACTCAT  267

seq1  TAACTCAATTACTATCAGCAATTAAGGCCAGTTTGGGAACAGTGGCCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAACTCAATTACTATCAGCAATTAAGGCCAGTTTGGGAACAGTGG-CTGA  316

seq1  GACAAAAAAGACATTATCATCCTGGGAAATGAATCCAGAATAAAGGGAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAAGACATTATCATCCTGGGAAATGAATCCAGAATAAAGGGAAT  366

seq1  TTATTCCACCTTGGCTAATGAGCAGCTGTATAGGGATGGAAATGAAGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCACCTTGGCTAATGAGCAGCTGTATAGGGATGGAAATGAAGGCC  416

seq1  TTTGCCTCGGAATTGCTTTTGACCGTTGGGGGGTTGGGGGGGGTAGAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCGGAATTGCTTTTGACCGTTGGGGGGTTGGGGGGGGTAGAGAA  466

seq1  AAGGTTCGGCTCTACGTAAAGCTCTTGGAAGGACATTAGGGACATTGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCGGCTCTACGTAAAGCTCTTGGAAGGACATTAGGGACATTGTTA  516

seq1  CAATGCAAATGAGGAAGGCCGTTGTGTTTGGGTGGTTTATGGGTTTAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAATGAGGAAGGCCGTTGTGTTTGGGTGGTTTATGGGTTTAGTA  566

seq1  AAAGGAGTAACATTTCAATTAGTGGGGAAGGAATGAGAACCTGCCTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTAACATTTCAATTAGTGGGGAAGGAATGAGAACCTGCCTCAAA  616

seq1  GAGGCTTAATTGGCGACTTGGCATTCCCAGGGGACTTTGAAGTAGCACCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTAATTGGCGACTTGGCATTCCCAGGGGACTTTGAAGTAGCACCC  666

seq1  GAGCAGGCAGTTTTCAGAAATGGGTGGAGAATAGAATACAGCAACTTAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCAGTTTTCAGAAATGGGTGGAGAATAGAATACAGCAACTTAGG  716

seq1  TCCCAGGCTGGGGATGCTGGAGGCAGATGGAGATGCTGTGAAGGTACCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTGGGGATGCTGGAGGCAGATGGAGATGCTGTGAAGGTACCAT  766

seq1  CCACAGCACTAAGCAGATGCCAGCCACATGCAAGTGCCAGCTTTAGCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCACTAAGCAGATGCCAGCCACATGCAAGTGCCAGCTTTAGCTCT  816

seq1  TGGGGCTCCCGGATGGTGTCCCCCATGCCACCTCACCCAGCTCCCCTGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCCCGGATGGTGTCCCCCATGCCACCTCACCCAGCTCCCCTGAC  866

seq1  GTCTCCAGGAAACCATCTGGCTTCAAGGGCTGTAACCCTAACCTCACCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGAAACCATCTGGCTTCAAGGGCTGTAACCCTAACCTCACCAC  916

seq1  TATGGAATTCCTTTTTTTTTCCCCCCTCCTCAAGAATCCCTTTTGCTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATTCCTTTTTTTTTCCCCCCTCCTCAAGAATCCCTTTTGCTTTG  966

seq1  AATTGAATTCCTGACTGCACAGGGTTATGGGGGAGGGTGTACTATGGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTCCTGACTGCACAGGGTTATGGGGGAGGGTGTACTATGGCAA  1016

seq1  ATGAAGTGTAGTGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGTAGTGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGCA  1066

seq1  TCTCTGTGTGGGTATGTTTGTGTGTGTGATCACACAGATACAAGTAGGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGGGTATGTTTGTGTGTGTGATCACACAGATACAAGTAGGTT  1116

seq1  CAAAGTCGGCAGGATCTGAAGACTGAGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  CAAAGTCGGCAGGATCTGAAGACTGAGAATTC  1148

seq1: chr16_29729096_29729356
seq2: B6Ng01-309M20.g_75_335

seq1  CTGGCCATCTTTGGCGTCCCTTTCTGCCAGTCTCTGCCAGCAGGTGGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATCTTTGGCGTCCCTTTCTGCCAGTCTCTGCCAGCAGGTGGCGC  50

seq1  TCACAGCTCTCAGACAACACAATGGGCACCTAGGTTCTGAACTTCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTCTCAGACAACACAATGGGCACCTAGGTTCTGAACTTCTGGCC  100

seq1  TTCCCCCCCCCCCCCCACCTTTGGAATGGCATAATTTGGGAGTCATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCCCCCCCCCACCTTTGGAATGGCATAATTTGGGAGTCATCTAT  150

seq1  GGGACGACTGCCAAGGTCTTAAATTTTCTACGTGGGGTTTGGATAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGACTGCCAAGGTCTTAAATTTTCTACGTGGGGTTTGGATAATTTT  200

seq1  CTCCAGACGGCTTGGAGAACTGGACTGGATGGGAGGAAAAGGGGCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACGGCTTGGAGAACTGGACTGGATGGGAGGAAAAGGGGCAGTGG  250

seq1  TGGGGGTGGGG  261
      |||||||||||
seq2  TGGGGGTGGGG  261