BAC Information

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BAC

Clone NameB6Ng01-310H01
Chromosome16 (Build37)
Map Location 92,540,855 - 92,697,623
singlet/doubletdoublet
Overlap geneClic6, Runx1
Upstream geneIfngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H01.bB6Ng01-310H01.g
ACCGA102417GA102418
length1,035772
definitionB6Ng01-310H01.b B6Ng01-310H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,696,587 - 92,697,623)(92,540,855 - 92,541,623)
sequence
gaattcctcgggtcgggcttacagtaaaagcacgttcatttccaggcact
ctcattcatagagccagcgggcgcgggcaggacgggcgccccgcggccgg
acccagccagggcaccacgctgcccggccccgcggctggcacttccatcc
tgagctccccgagacgcaagaaagtcaccctttgcggctctttctagatc
tgcgttggaccttcttgttttcctttcctttcctttttttttttttttaa
tttttatttttattttccctttcttacttttgaatgaaccggcttctagg
ctttggatgtttcaacttctaggctgtgaacttttctccgattgtttctt
ttgacaactgcgggagaaagtgttccggagttccaggcgagcggtgaagt
tgcgtgtgcgtggcagggtgcgtgggagtgagcgtgtgtaactcgagcct
actggtctacggtgcctcctcccaggcccgctccacctgctgcggttaca
cggtgctcgctcgtgggtatttgtgcgccccagcagaaaaccagccaccg
ccgggcgacgttggaggaagatcatcttgccagactctgggctgactcac
tcaaccaatgtagacagtggctgacttccgaagagtgcgagtctgcctgt
gtgtgtgacccaactgcggctcaactcccaccaaaccacaggatcagcca
caaacttaaccagcgttcccaaaccagagtcctcagctgtgggaagctct
accctgagtgtcatcgagtttgacttttttttttttaagattagctacag
atctttgtaaagcactgaccatttatttggccagaatttattgagtaatg
acaagtgatcctatcccagccttccaactactgaagctgattttcaaggc
tactttaaaaaaaaaaactgcagcaaaacattaatggatttctgttgtgt
ttaaattctctacagattgtattgtaaatattttatgaagtagatcatat
gttatattatatatacgagcacatacattagtagc
gaattccagatgaaaatccagaaagtcccactcttaagcttttctggaaa
atggtcctttcctgagaagttgaggagtttctggtgtgcttgtggcattc
cctccatcattcttggggccacccttggtcatagtgaggcctgttccagc
ctaaccatgaatgaggaaatgtgagcttgcaagctctgcaaggcttgtcc
cttcaccaccacacaccctacaggaaacatctcttgtacacttggctaga
gcgctgggctctggaacctcgtgcttcataggcacttgggtgagggtacc
agtaagaccccgagattaggtgaaaaaatatctcgaaaggaaacaaagtc
caatatggtggccactacattttcttgtttcttggaagctgtggcttcag
tccaatagtctatttctttgtcactcaaagaaggttttcagggtcgtgtc
tagcctgtcccaccctgctccacatcactctgcacctctgtaggagtcac
cttgttaagctcttgtgacattcaaacttggtaaatgagttgatggttgg
gagtttagttttgttaattttgttcttttagatattaaaatgatcacaag
cggtgtgcctttacaaattaaacattctcaatcaactccatcgtttttct
ttagttttgtgtctgagtgtttaacacgcctgtgtgtgtgtttgtgtttg
gactgtgtgggtgtgcgtgcatgtgcggggaaggcttgggattaacggac
gttgagaatctcttgacctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92696587_92697623
seq2: B6Ng01-310H01.b_45_1079 (reverse)

seq1  GCTACTAATGTATGTGCTCGTATATATAAATATATACATATGATCTACTT  50
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GCTACTAATGTATGTGCTCGTATATAT-AATATA-ACATATGATCTACTT  48

seq1  CATAAAATATTTACAATACAATCTGTAGAGAATTTAAACACAACAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATATTTACAATACAATCTGTAGAGAATTTAAACACAACAGAAAT  98

seq1  CCATTAATG-TTTGCTGCAGTTTTTTTTTTTTTAAGTAGCCTTGAAAATC  149
      ||||||||| |||||||||| ||||||||||| |||||||||||||||||
seq2  CCATTAATGTTTTGCTGCAG-TTTTTTTTTTTAAAGTAGCCTTGAAAATC  147

seq1  AGCTTCAGTAGTTGGAAGGCTGGGATAGGATCACTTGTCATTACTCAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGTAGTTGGAAGGCTGGGATAGGATCACTTGTCATTACTCAATA  197

seq1  AATTCTGGCCAAATAAATGGTCAGTGCTTTACAAAGATCTGTAGCTAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGCCAAATAAATGGTCAGTGCTTTACAAAGATCTGTAGCTAATC  247

seq1  TTAAAAAAAAAAAAGTCAAACTCGATGACACTCAGGGTAGAGCTTCCCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAGTCAAACTCGATGACACTCAGGGTAGAGCTTCCCAC  297

seq1  AGCTGAGGACTCTGGTTTGGGAACGCTGGTTAAGTTTGTGGCTGATCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGACTCTGGTTTGGGAACGCTGGTTAAGTTTGTGGCTGATCCTG  347

seq1  TGGTTTGGTGGGAGTTGAGCCGCAGTTGGGTCACACACACAGGCAGACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTGGGAGTTGAGCCGCAGTTGGGTCACACACACAGGCAGACTC  397

seq1  GCACTCTTCGGAAGTCAGCCACTGTCTACATTGGTTGAGTGAGTCAGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTCGGAAGTCAGCCACTGTCTACATTGGTTGAGTGAGTCAGCCC  447

seq1  AGAGTCTGGCAAGATGATCTTCCTCCAACGTCGCCCGGCGGTGGCTGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGGCAAGATGATCTTCCTCCAACGTCGCCCGGCGGTGGCTGGTT  497

seq1  TTCTGCTGGGGCGCACAAATACCCACGAGCGAGCACCGTGTAACCGCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGGGCGCACAAATACCCACGAGCGAGCACCGTGTAACCGCAGC  547

seq1  AGGTGGAGCGGGCCTGGGAGGAGGCACCGTAGACCAGTAGGCTCGAGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGCGGGCCTGGGAGGAGGCACCGTAGACCAGTAGGCTCGAGTTA  597

seq1  CACACGCTCACTCCCACGCACCCTGCCACGCACACGCAACTTCACCGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTCACTCCCACGCACCCTGCCACGCACACGCAACTTCACCGCTC  647

seq1  GCCTGGAACTCCGGAACACTTTCTCCCGCAGTTGTCAAAAGAAACAATCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACTCCGGAACACTTTCTCCCGCAGTTGTCAAAAGAAACAATCG  697

seq1  GAGAAAAGTTCACAGCCTAGAAGTTGAAACATCCAAAGCCTAGAAGCCGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTTCACAGCCTAGAAGTTGAAACATCCAAAGCCTAGAAGCCGG  747

seq1  TTCATTCAAAAGTAAGAAAGGGAAAATAAAAATAAAAATTAAAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAAAGTAAGAAAGGGAAAATAAAAATAAAAATTAAAAAAAAAA  797

seq1  AAAAAGGAAAGGAAAGGAAAACAAGAAGGTCCAACGCAGATCTAGAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGGAAAGGAAAACAAGAAGGTCCAACGCAGATCTAGAAAGA  847

seq1  GCCGCAAAGGGTGACTTTCTTGCGTCTCGGGGAGCTCAGGATGGAAGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAAAGGGTGACTTTCTTGCGTCTCGGGGAGCTCAGGATGGAAGTGC  897

seq1  CAGCCGCGGGGCCGGGCAGCGTGGTGCCCTGGCTGGGTCCGGCCGCGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCGGGGCCGGGCAGCGTGGTGCCCTGGCTGGGTCCGGCCGCGGGG  947

seq1  CGCCCGTCCTGCCCGCGCCCGCTGGCTCTATGAATGAGAGTGCCTGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGTCCTGCCCGCGCCCGCTGGCTCTATGAATGAGAGTGCCTGGAAA  997

seq1  TGAACGTGCTTTTACTGTAAGCCCGACCCGAGGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTGCTTTTACTGTAAGCCCGACCCGAGGAATTC  1035

seq1: chr16_92540855_92541623
seq2: B6Ng01-310H01.g_71_842

seq1  GAATTCCAGATGAAAATCCAGAAAGTCCCACTCTTAAGCTTTTCTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGAAAATCCAGAAAGTCCCACTCTTAAGCTTTTCTGGAAA  50

seq1  ATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGTGTGCTTGTGGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGTGTGCTTGTGGCATTC  100

seq1  CCTCCATCATTCTTGGGGCCACCCTTGGTCATAGTGAGGCCTGTTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCATTCTTGGGGCCACCCTTGGTCATAGTGAGGCCTGTTCCAGC  150

seq1  CTAACCATGAATGAGGAAATGTGAGCTTGCAAGCTCTGCAAGGCTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATGAATGAGGAAATGTGAGCTTGCAAGCTCTGCAAGGCTTGTCC  200

seq1  CTTCACCACCACACACCCTACAGGAAACATCTCTTGTACACTTGGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCACCACACACCCTACAGGAAACATCTCTTGTACACTTGGCTAGA  250

seq1  GCGCTGGGCTCTGGAACCTCGTGCTTCATAGGCACTTGGGTGAGGGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGGCTCTGGAACCTCGTGCTTCATAGGCACTTGGGTGAGGGTACC  300

seq1  AGTAAGACCCCGAGATTAGGTGAAAAAATATCTCGAAAGGAAACAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACCCCGAGATTAGGTGAAAAAATATCTCGAAAGGAAACAAAGTC  350

seq1  CAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAG  400

seq1  TCCAATAGTCTATTTCTTTGTCACTCAAAGAAGGTTTTCAGGGTCGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGTCTATTTCTTTGTCACTCAAAGAAGGTTTTCAGGGTCGTGTC  450

seq1  TAGCCTGTCCCACCCTGCTCCACATCACTCTGCACCTCTGTAGGAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTCCCACCCTGCTCCACATCACTCTGCACCTCTGTAGGAGTCAC  500

seq1  CTTGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGG  550

seq1  GAGTTTAGTTTTGTTAATTTTGTTCTTTTAGATATTAAAATGATCACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGTTTTGTTAATTTTGTTCTTTTAGATATTAAAATGATCACAAG  600

seq1  CGGTGTGCC-TTACAAATTAAACATTCTCAATCAACTCCATCGTTTTTCT  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGCCTTTACAAATTAAACATTCTCAATCAACTCCATCGTTTTTCT  650

seq1  TTAG-TTTGTGTCTGAGTGTTTAACACGCCTGTGTGTGTGTTTGTGTTTG  698
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGTGTCTGAGTGTTTAACACGCCTGTGTGTGTGTTTGTGTTTG  700

seq1  GACTGTGTGGGTGTGCGTGCACGTGCGGGGAAGGCTTGGGA-TGACGGAG  747
      ||||||||||||||||||||| ||||||||||||||||||| | ||||| 
seq2  GACTGTGTGGGTGTGCGTGCATGTGCGGGGAAGGCTTGGGATTAACGGAC  750

seq1  GTTGAGAATCTTCTTGA-CTGCT  769
      |||||||||| |||||| |||||
seq2  GTTGAGAATC-TCTTGACCTGCT  772