BAC Information

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BAC

Clone NameB6Ng01-312K17
Chromosome16 (Build37)
Map Location 59,617,099 - 59,762,210
singlet/doubletdoublet
Overlap geneArl6, Epha6
Upstream geneE330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K17.bB6Ng01-312K17.g
ACCGA104081GA104082
length1,1111,121
definitionB6Ng01-312K17.b B6Ng01-312K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,761,077 - 59,762,210)(59,617,099 - 59,618,232)
sequence
gaattctttcctttcattttcaaactcctctctgtctgtcaccttgaaac
ccttgcagaacaggacagtagccatgagagttttggcaggtttagaaatg
caaagaatcatcacttgagatattgatagatacaaatcatataagtctat
gtatttaatcattttggtttgttgagtttgtaaattttcccacagtgcat
attttacttgtattctaaaagaataaaaatactatacatctcaaacatag
agaaacagctcctgatagagttgcaaaacaatttcttctgctaggtatca
gacagtgactaagcaatgtgttaatggggcttctctactgacaaagctgg
ctggagatcgtttttgctggatcacgttttcttttgactgaaagacaaga
cgataaaggaaatgaacattcctatctcactgatttttcacagtattctg
gaacataatcccaagaagtgccaggttccttcagagatttacatttaaca
tctggtcttcattgtcaccactagaattaccatcacactattaactttta
taggctgatagccctgagtccaagatgcaatctgaaaagaggatgactga
gtcttgaatttcaaacattacaaaactttatcagtaaccttgttagcaag
gaggtaccctttcccctggtggactctgttcctcagttggccatctgttg
ataagcttaagaaggccattacttatcaggattttacaggttccatattg
gcacaacataccaaagatgtcaaggagagagttaccccttatctgcataa
tccttaggtttcatcatcaaggcattgcagtattccagtgtggatgcttt
tccattataataaataaaacactatggacatcatatagtagaggaaacaa
gaagtataagcttgagctctgatttttaatctcatttgaccataatttag
taacagatgatcactcatttaaaaccctcatgcttcagtgctgcatctgg
agagataataaaactgtcagtgcacagaaacattgtaagaaaataccagc
taaaggtgtggcactgtggactgctcactagatacttgagcatttatagt
gagacttctca
gaattcacaccaagacttgaaaattggtactgtaaaactgggtcattact
gacacctagtggctatcgctacacacaggtagctggggaagaaaggggaa
agagaaagtaaaccctccctgttctcctatcagctatcctcatctcatcc
tgaggttggaatgactacacttagagtgttggcaggactcccactgcgca
ctgcatcatcactgggagcaatggtcagcactggtgaaggaagaaatctg
ccatgaaaattcacttctctatcttctttggattttgctgaaacccaaca
gtttcttctggaaatccatactgtaatccccaatacttcttaaaataatt
taaaaattgaagttgatcggctcaaagaaaaaaatgcctttactaatatt
taggaccattaaagatgtttctttgcttgttacttgtaaaataggattgg
gatgttctttgcaatttagtagtaaatgcacttggaggcagagggagaca
aatctccaagtttaagtatagcctggtctacagagtgaattccaggacag
ccagggctataagagaaactgtctcaaaaaaaaaatcaaaaaaccaaacc
aaaccaaaccaaaccaaaataaaacaacaggttgtgcaattcactacaaa
cccaaattctatctatctcagtgaagcacctgtagcagattacttttcca
cccaacacaaaaagctgtacgtctccaacggtttccaaaggatggaagaa
ggaaaatgaaaaactatcccacacatatctaatattataaccaaaaatta
tgagaatttgattctcttttacttttattcagagtatgaaaattcccagt
aagaatgaacagtcattctatgtaaattgaaaacttctgacctggccata
aagacttttcagaaaggccatacagaatacacacctatctattacattgc
atgctgcaagctgttcttatacatctatacagacactataaccctaggga
aaacgatactatctacctagtagtgctgtaccactgtactatagctattt
tgatagaaaactgactgaataaacaagaattcatatagcattatactaat
gaggtgtaaatatacaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59761077_59762210
seq2: B6Ng01-312K17.b_47_1157 (reverse)

seq1  TGAGAAGTCTTCACTATAAATGCTTCAAAGTATTTCTTAAGTGAGCAGTC  50
      ||||||||| ||||||||||||||   |||||| |    |||||||||  
seq2  TGAGAAGTC-TCACTATAAATGCT--CAAGTATCT----AGTGAGCAG--  41

seq1  TCAACAGTGGCCACA-CTTTAGCTTGTTATTTTCTTACAATGTTTCTGTG  99
      || ||||| |||||| ||||||| || |||||||||||||||||||||||
seq2  TCCACAGT-GCCACACCTTTAGC-TGGTATTTTCTTACAATGTTTCTGTG  89

seq1  GCAACTGGACAGTTTTATTAATTCTCTTCCAGATGCAGCCACTGAAGCAT  149
         ||| |||||||||||||  |||| ||||||||||| |||||||||||
seq2  --CACT-GACAGTTTTATTA--TCTC-TCCAGATGCAG-CACTGAAGCAT  132

seq1  GAGGGTTTTTAAATGAGTGATTCATCTTGTTTACTAAATTATGGTCAAAT  199
      ||||| |||||||||||||| ||||||   ||||||||||||||||||| 
seq2  GAGGG-TTTTAAATGAGTGA-TCATCT--GTTACTAAATTATGGTCAAA-  177

seq1  TGAGATTAAAAATCAGAGCTCCAAGCTTATACTTCTTGTTTCCTCTACTA  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGATTAAAAATCAGAGCT-CAAGCTTATACTTCTTGTTTCCTCTACTA  226

seq1  TATGATGTCCATAGTGTTTTATTTATTATAATGGAAAAGCATCCACACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTCCATAGTGTTTTATTTATTATAATGGAAAAGCATCCACACTG  276

seq1  GAATACTGCAATGCCTTGATGATGAAACCTAAGGATTATGCAGATAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGCAATGCCTTGATGATGAAACCTAAGGATTATGCAGATAAGGG  326

seq1  GTAACTCTCTCCTTGACATCTTTGGTATGTTGTGCCAATATGGAACCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTCTCCTTGACATCTTTGGTATGTTGTGCCAATATGGAACCTGT  376

seq1  AAAATCCTGATAAGTAATGGCCTTCTTAAGCTTATCAACAGATGGCCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGATAAGTAATGGCCTTCTTAAGCTTATCAACAGATGGCCAAC  426

seq1  TGAGGAACAGAGTCCACCAGGGGAAAGGGTACCTCCTTGCTAACAAGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACAGAGTCCACCAGGGGAAAGGGTACCTCCTTGCTAACAAGGTT  476

seq1  ACTGATAAAGTTTTGTAATGTTTGAAATTCAAGACTCAGTCATCCTCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAAGTTTTGTAATGTTTGAAATTCAAGACTCAGTCATCCTCTTT  526

seq1  TCAGATTGCATCTTGGACTCAGGGCTATCAGCCTATAAAAGTTAATAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCATCTTGGACTCAGGGCTATCAGCCTATAAAAGTTAATAGTG  576

seq1  TGATGGTAATTCTAGTGGTGACAATGAAGACCAGATGTTAAATGTAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTAATTCTAGTGGTGACAATGAAGACCAGATGTTAAATGTAAATC  626

seq1  TCTGAAGGAACCTGGCACTTCTTGGGATTATGTTCCAGAATACTGTGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAACCTGGCACTTCTTGGGATTATGTTCCAGAATACTGTGAAA  676

seq1  AATCAGTGAGATAGGAATGTTCATTTCCTTTATCGTCTTGTCTTTCAGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGAGATAGGAATGTTCATTTCCTTTATCGTCTTGTCTTTCAGTC  726

seq1  AAAAGAAAACGTGATCCAGCAAAAACGATCTCCAGCCAGCTTTGTCAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACGTGATCCAGCAAAAACGATCTCCAGCCAGCTTTGTCAGTA  776

seq1  GAGAAGCCCCATTAACACATTGCTTAGTCACTGTCTGATACCTAGCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCCATTAACACATTGCTTAGTCACTGTCTGATACCTAGCAGAA  826

seq1  GAAATTGTTTTGCAACTCTATCAGGAGCTGTTTCTCTATGTTTGAGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTTTTGCAACTCTATCAGGAGCTGTTTCTCTATGTTTGAGATGT  876

seq1  ATAGTATTTTTATTCTTTTAGAATACAAGTAAAATATGCACTGTGGGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTTTTATTCTTTTAGAATACAAGTAAAATATGCACTGTGGGAAA  926

seq1  ATTTACAAACTCAACAAACCAAAATGATTAAATACATAGACTTATATGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAACTCAACAAACCAAAATGATTAAATACATAGACTTATATGAT  976

seq1  TTGTATCTATCAATATCTCAAGTGATGATTCTTTGCATTTCTAAACCTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTATCAATATCTCAAGTGATGATTCTTTGCATTTCTAAACCTGC  1026

seq1  CAAAACTCTCATGGCTACTGTCCTGTTCTGCAAGGGTTTCAAGGTGACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTCATGGCTACTGTCCTGTTCTGCAAGGGTTTCAAGGTGACAG  1076

seq1  ACAGAGAGGAGTTTGAAAATGAAAGGAAAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGAGTTTGAAAATGAAAGGAAAGAATTC  1111

seq1: chr16_59617099_59618232
seq2: B6Ng01-312K17.g_70_1190

seq1  GAATTCACACCAAGACTTGAAAATTGGTACTGTAAAACTGGGTCATTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCAAGACTTGAAAATTGGTACTGTAAAACTGGGTCATTACT  50

seq1  GACACCTAGTGGCTATCGCTACACACAGGTAGCTGGGGAAGAAAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTAGTGGCTATCGCTACACACAGGTAGCTGGGGAAGAAAGGGGAA  100

seq1  AGAGAAAGTAAACCCTCCCTGTTCTCCTATCAGCTATCCTCATCTCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTAAACCCTCCCTGTTCTCCTATCAGCTATCCTCATCTCATCC  150

seq1  TGAGGTTGGAATGACTACACTTAGAGTGTTGGCAGGACTCCCACTGCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGGAATGACTACACTTAGAGTGTTGGCAGGACTCCCACTGCGCA  200

seq1  CTGCATCATCACTGGGAGCAATGGTCAGCACTGGTGAAGGAAGAAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCATCACTGGGAGCAATGGTCAGCACTGGTGAAGGAAGAAATCTG  250

seq1  CCATGAAAATTCACTTCTCTATCTTCTTTGGATTTTGCTGAAACCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAATTCACTTCTCTATCTTCTTTGGATTTTGCTGAAACCCAACA  300

seq1  GTTTCTTCTGGAAATCCATACTGTAATCCCCAATACTTCTTAAAATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTGGAAATCCATACTGTAATCCCCAATACTTCTTAAAATAATT  350

seq1  TAAAAATTGAAGTTGATCGGCTCAAAGAAAAAAATGCCTTTACTAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTGAAGTTGATCGGCTCAAAGAAAAAAATGCCTTTACTAATATT  400

seq1  TAGGACCATTAAAGATGTTTCTTTGCTTGTTACTTGTAAAATAGGATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCATTAAAGATGTTTCTTTGCTTGTTACTTGTAAAATAGGATTGG  450

seq1  GATGTTCTTTGCAATTTAGTAGTAAATGCACTTGGAGGCAGAGGGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTTGCAATTTAGTAGTAAATGCACTTGGAGGCAGAGGGAGACA  500

seq1  AATCTCCAAGTTTAAGTATAGCCTGGTCTACAGAGTGAATTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAAGTTTAAGTATAGCCTGGTCTACAGAGTGAATTCCAGGACAG  550

seq1  CCAGGGCTATAAGAGAAACTGTCTCAAAAAAAAAATCAAAAAACCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATAAGAGAAACTGTCTCAAAAAAAAAATCAAAAAACCAAACC  600

seq1  AAACCAAACCAAACCAAAATAAAACAACAGGTTGTGCAATTCACTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAAACCAAAATAAAACAACAGGTTGTGCAATTCACTACAAA  650

seq1  CCCAAATTCTATCTATCTCAGTGAAGCACCTGTAGCAGATTACTTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTCTATCTATCTCAGTGAAGCACCTGTAGCAGATTACTTTTCCA  700

seq1  CCCAACACAAAAAGCTGTACGTCTCCAACGGTTTCCAAAGGATGGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACAAAAAGCTGTACGTCTCCAACGGTTTCCAAAGGATGGAAGAA  750

seq1  GGAAAATGAAAAACTATCCCACACATATCTAATATTATAACCAAAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGAAAAACTATCCCACACATATCTAATATTATAACCAAAAATTA  800

seq1  TGAGAATTTGATTCTCTTTTACTTTTATTCAGAGTATGAAAATTCCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTGATTCTCTTTTACTTTTATTCAGAGTATGAAAATTCCCAGT  850

seq1  AAGAATGAACAGTCATTCTATGTAAATTGAAAACTTCTGACCTGGCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAACAGTCATTCTATGTAAATTGAAAACTTCTGACCTGGCCATA  900

seq1  AAGACTTTTCAGAAAGGCCATACAGAATACACACCTATCTATTACATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTTCAGAAAGGCCATACAGAATACACACCTATCTATTACATTGC  950

seq1  ATGCTGCAAGCTGTTCTTATACATCTTATACAGACACTATAACCCTAGGG  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGCTGCAAGCTGTTCTTATACATC-TATACAGACACTATAACCCTAGGG  999

seq1  AAAACGATACTTATCTAACCTAGTAGTGCTGTACCACTGTACTATAGCTA  1050
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AAAACGATAC-TATCT-ACCTAGTAGTGCTGTACCACTGTACTATAGCTA  1047

seq1  TTTTGATTAAGAAAAACTGAACTGAAATAAACAAGATATCATTAATAGCA  1100
      |||||||  || ||||||| |||| |||||||||||  ||||  ||||||
seq2  TTTTGAT--AG-AAAACTG-ACTG-AATAAACAAGAATTCAT--ATAGCA  1090

seq1  TTTAATACTAAATGAGTGTTAAAATATAC-ATATA  1134
      ||  ||||| |||||| ||  |||||||| |||||
seq2  TT--ATACT-AATGAG-GTGTAAATATACAATATA  1121