BAC Information

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BAC

Clone NameB6Ng01-312N06
Chromosome16 (Build37)
Map Location 54,709,018 - 54,813,209
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433027, LOC100043442
Downstream geneLOC100043449, LOC667927, LOC436421, Zpld1, Nfkbiz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312N06.bB6Ng01-312N06.g
ACCGA104201GA104202
length1,1581,019
definitionB6Ng01-312N06.b B6Ng01-312N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,812,046 - 54,813,209)(54,709,018 - 54,710,041)
sequence
gaattccattaatagcacgacatcaactacatgatatggaaattaataca
gagctaaaacaccccgaaaaacataatggtaagtttgccaagctcctgac
ctgagcaagaccaattctgatttcttactattgcatgatatcaacagttg
atcttttagaactttttcttaaagtgtgttgagagagcatgccactatta
ctcatttgtttttgtcataaatttgtgctggattttggcaaatatgtttt
ctgaatctaatgttagagttatgtgataactttttcctttagcctgcttc
tattgacttaatggttttcactgatgatcattgaatggagagcctgcctt
acctgagtagacaaattccatttgttcttggtggataattctttttatcg
gttgttgtgttcaattatgttgaatatttttacatctgtattcataaaaa
gatatgactgtctagttttcctttaatgttatgtcttctgtcagatttgc
attttggggtaatgtttggtcacagcaaagaatgagttcacaaatattct
gtgtgcttatattttcttaaaaagatcgtagatatttgttgttgtggcat
ctatgtatttgatagaatttatcaataagctcttctaattaagaaagttg
ttcattagtgattgaaatatattaatagatgtatatggcttgaatatttt
tagaaatgaatctttattgcacagtgaacctgaaaagaataagatctttc
aacaaataaagtgagttagagatcaaaattaccattcttgattaaaaaaa
aaccttggtattaatatctaatttatattagtattaccaaatgcaaaact
actttaaaaatacaaagtacacaccaacatgggttatatacaagggcata
cttgtcaactaataaaggactgagagtattgttttgttactgcaaaacac
tgtggtaacctttaaactcaataatgaaagagctataatatccatggatt
gttttaaagccagtaacattgaaattagttgtgattgacaggaagcaagc
aaaaaaaatcagtgataattacaaaattatttgaacataatataggaact
taatttgaaatgcagtcaggacaagtgatgtttagagtatgtcgtgtaac
tctgctaa

gaattctccatgaacttagcctactttaatgataaaatatttaaagcatt
atcagatttttttaataaaacattgcattcatcagacttagatatttttg
cataagtcattatatatgtagatgtagatatagatatgacatacacactt
tatatactcttttaagtgtctattactatcatttcgacaatagtccacat
aatcaaaaaagcagtgcaaataaaatcatggaccagatcctattggtata
ctggctagtagtatgatcttcttcaagaaacttaaattaagttaagtaat
ttatctttgataaaaagctaaactgtagccaggcgtggtggcacacacct
ttaatcccagctcttgggaggtagaggcaggcagatttctgagttcaagg
ccagtctggtctacaaagtgagttccaggacagccagggctatacagaga
aaccctgtctcaaaaaccaaaaaaaaaaaaaaaaaaaaaaagctaaaatt
ttgggctgtgctatctgaatagagcattaaaacttgatttcttttctccc
attatagaatttagtcagtctcatcagtgtaatagcagcttacctattgt
tgttgtgtatattccatccaagaactacatctaaaaatagaaatatacca
aacccaaaagttttcctacataactgtaattttacatatttaaacttatt
aattctgttatagtaagtatgtaaactcttccactggacagtaaaatgca
agattggtacataaattattctacacagtagtgtgcttggagaaaaccta
attaaaatgtagccaaatttccactagagtaattatctttgggcaatttt
tagcttttctcatgttttgaagaagataactcagaggtattgcagtcttt
tttctttctttttttgccttctgtctagttagctttcttctgctgtgaaa
atatgccataatcaaaggtctattggagagcaaaggttcattggcttcat
gtccaatcctagtcataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54812046_54813209
seq2: B6Ng01-312N06.b_47_1204 (reverse)

seq1  TTAGCAGAGTGTACA-GACATACTCTAAACATTCACTGGTCTTGACTGCA  49
      |||||||||| |||| ||||||||||||||| ||||| ||| ||||||||
seq2  TTAGCAGAGT-TACACGACATACTCTAAACA-TCACTTGTCCTGACTGCA  48

seq1  TTTTCAAATTATGTTCTTATATTTATTGTTCAAAT-ATTTTGTAATTATC  98
       |||||||||| |||| ||||||   ||||||||| ||||||||||||||
seq2  -TTTCAAATTAAGTTCCTATATT--ATGTTCAAATAATTTTGTAATTATC  95

seq1  ACTGGATTTTTTTTGCTTTGCTTTCCTGTCAATTCAACAACTAATTTCAA  148
      ||| |||||||||||| |||| |||||||||||   ||||||||||||||
seq2  ACT-GATTTTTTTTGC-TTGC-TTCCTGTCAAT--CACAACTAATTTCAA  140

seq1  TGTTACTGGCTTTAAAAC-ATCCATGGATATTATAGCTCTTTCATTATTG  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTACTGGCTTTAAAACAATCCATGGATATTATAGCTCTTTCATTATTG  190

seq1  AGTTTAAGGTTTACCACAGTGTTTTGCAGTAACAAAACAATACTCTCAGT  247
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGGTTACCACAGTGTTTTGCAGTAACAAAACAATACTCTCAGT  240

seq1  CC-TTATTAGTTGACAAGTATGCCCTTGTATATAACCCATGTTGGTGTGT  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTAGTTGACAAGTATGCCCTTGTATATAACCCATGTTGGTGTGT  290

seq1  ACTTTGTATTTTTAAAGTAGTTTTGCATTTGGTAATACTAATATAAATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTATTTTTAAAGTAGTTTTGCATTTGGTAATACTAATATAAATTA  340

seq1  GATATTAATACCAAGGTTTTTTTTTAATCAAGAATGGTAATTTTGATCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATACCAAGGTTTTTTTTTAATCAAGAATGGTAATTTTGATCTC  390

seq1  TAACTCACTTTATTTGTTGAAAGATCTTATTCTTTTCAGGTTCACTGTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACTTTATTTGTTGAAAGATCTTATTCTTTTCAGGTTCACTGTGC  440

seq1  AATAAAGATTCATTTCTAAAAATATTCAAGCCATATACATCTATTAATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATTCATTTCTAAAAATATTCAAGCCATATACATCTATTAATAT  490

seq1  ATTTCAATCACTAATGAACAACTTTCTTAATTAGAAGAGCTTATTGATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCACTAATGAACAACTTTCTTAATTAGAAGAGCTTATTGATAA  540

seq1  ATTCTATCAAATACATAGATGCCACAACAACAAATATCTACGATCTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCAAATACATAGATGCCACAACAACAAATATCTACGATCTTTTT  590

seq1  AAGAAAATATAAGCACACAGAATATTTGTGAACTCATTCTTTGCTGTGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATAAGCACACAGAATATTTGTGAACTCATTCTTTGCTGTGAC  640

seq1  CAAACATTACCCCAAAATGCAAATCTGACAGAAGACATAACATTAAAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTACCCCAAAATGCAAATCTGACAGAAGACATAACATTAAAGGA  690

seq1  AAACTAGACAGTCATATCTTTTTATGAATACAGATGTAAAAATATTCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACAGTCATATCTTTTTATGAATACAGATGTAAAAATATTCAAC  740

seq1  ATAATTGAACACAACAACCGATAAAAAGAATTATCCACCAAGAACAAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGAACACAACAACCGATAAAAAGAATTATCCACCAAGAACAAATG  790

seq1  GAATTTGTCTACTCAGGTAAGGCAGGCTCTCCATTCAATGATCATCAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTACTCAGGTAAGGCAGGCTCTCCATTCAATGATCATCAGTG  840

seq1  AAAACCATTAAGTCAATAGAAGCAGGCTAAAGGAAAAAGTTATCACATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTAAGTCAATAGAAGCAGGCTAAAGGAAAAAGTTATCACATAA  890

seq1  CTCTAACATTAGATTCAGAAAACATATTTGCCAAAATCCAGCACAAATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACATTAGATTCAGAAAACATATTTGCCAAAATCCAGCACAAATTT  940

seq1  ATGACAAAAACAAATGAGTAATAGTGGCATGCTCTCTCAACACACTTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAACAAATGAGTAATAGTGGCATGCTCTCTCAACACACTTTAA  990

seq1  GAAAAAGTTCTAAAAGATCAACTGTTGATATCATGCAATAGTAAGAAATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTTCTAAAAGATCAACTGTTGATATCATGCAATAGTAAGAAATC  1040

seq1  AGAATTGGTCTTGCTCAGGTCAGGAGCTTGGCAAACTTACCATTATGTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGTCTTGCTCAGGTCAGGAGCTTGGCAAACTTACCATTATGTTT  1090

seq1  TTCGGGGTGTTTTAGCTCTGTATTAATTTCCATATCATGTAGTTGATGTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGTGTTTTAGCTCTGTATTAATTTCCATATCATGTAGTTGATGTC  1140

seq1  GTGCTATTAATGGAATTC  1164
      ||||||||||||||||||
seq2  GTGCTATTAATGGAATTC  1158


seq1: chr16_54709018_54710041
seq2: B6Ng01-312N06.g_67_1085

seq1  GAATTCTCCATGAACTTAGCCTACTTTAATGATAAAATATTTAAAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGAACTTAGCCTACTTTAATGATAAAATATTTAAAGCATT  50

seq1  ATCAGATTTTTTTAATAAAACATTGCATTCATCAGACTTAGATATTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTTTTTAATAAAACATTGCATTCATCAGACTTAGATATTTTTG  100

seq1  CATAAGTCATTATATATGTAGATGTAGATATAGATATGACATACACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTCATTATATATGTAGATGTAGATATAGATATGACATACACACTT  150

seq1  TATATACTCTTTTAAGTGTCTATTACTATCATTTCGACAATAGTCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCTTTTAAGTGTCTATTACTATCATTTCGACAATAGTCCACAT  200

seq1  AATCAAAAAAGCAGTGCAAATAAAATCATGGACCAGATCCTATTGGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAAAGCAGTGCAAATAAAATCATGGACCAGATCCTATTGGTATA  250

seq1  CTGGCTAGTAGTATGATCTTCTTCAAGAAACTTAAATTAAGTTAAGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGTAGTATGATCTTCTTCAAGAAACTTAAATTAAGTTAAGTAAT  300

seq1  TTATCTTTGATAAAAAGCTAAACTGTAGCCAGGCGTGGTGGCACACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGATAAAAAGCTAAACTGTAGCCAGGCGTGGTGGCACACACCT  350

seq1  TTAATCCCAGCTCTTGGGAGGTAGAGGCAGGCAGATTTCTGAGTTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCTCTTGGGAGGTAGAGGCAGGCAGATTTCTGAGTTCAAGG  400

seq1  CCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  450

seq1  AACCCTGTCTCAAAAACCAAAAAAAAAAAAAAAAAAAAAAAGCTAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAAAACCAAAAAAAAAAAAAAAAAAAAAAAGCTAAAATT  500

seq1  TTGGGCTGTGCTATCTGAATAGAGCATTAAAACTTGATTTCTTTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTGCTATCTGAATAGAGCATTAAAACTTGATTTCTTTTCTCCC  550

seq1  ATTATAGAATTTAGTCAGTCTCATCAGTGTAATAGCAGCTTACCTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAATTTAGTCAGTCTCATCAGTGTAATAGCAGCTTACCTATTGT  600

seq1  TGTTGTGTATATTCCATCCAAGAACTACATCTAAAAATAGAAATATACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTATATTCCATCCAAGAACTACATCTAAAAATAGAAATATACCA  650

seq1  AACCCAAAAGTTTTCCTACATAACTGTAATTTTACATATTTAAACTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAAGTTTTCCTACATAACTGTAATTTTACATATTTAAACTTATT  700

seq1  AATTCTGTTATAGTAAGTATGTAAACTCTTCCACTGGACAGTAAAATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTATAGTAAGTATGTAAACTCTTCCACTGGACAGTAAAATGCA  750

seq1  AGATTGGTACATAAATTATTCTACACAGTAGTGTGCTTGGAGAAAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGTACATAAATTATTCTACACAGTAGTGTGCTTGGAGAAAACCTA  800

seq1  ATTAAAATGTAGCCAAATTTCCACTAGAGTAATTATCTTTGGGCAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGTAGCCAAATTTCCACTAGAGTAATTATCTTTGGGCAATTTT  850

seq1  TAGCTTTTCTCATGTTTTGAAGAAGATAACTCAGAGGTATTGCAGTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTCTCATGTTTTGAAGAAGATAACTCAGAGGTATTGCAGTCTTT  900

seq1  TTTCTTTCTTTTTTTGCCTTCTTGTTCTAGTTAGCTTTCTTCTGCTGTG-  949
      ||||||||||||||||||||||   |||||||||||||||||||||||| 
seq2  TTTCTTTCTTTTTTTGCCTTCT--GTCTAGTTAGCTTTCTTCTGCTGTGA  948

seq1  ATATATGCCATAATCAAAGGTCTATTGGAGAGCAAAGGTTCATTTGGCTT  999
      | |||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  AAATATGCCATAATCAAAGGTCTATTGGAGAGCAAAGGTTCA-TTGGC-T  996

seq1  TCATGTCCCAATCCTAGTCCATAAT  1024
      |||||| ||||||||||| ||||||
seq2  TCATGT-CCAATCCTAGT-CATAAT  1019


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