BAC Information

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BAC

Clone NameB6Ng01-313E06
Chromosome16 (Build37)
Map Location 53,613,245 - 53,743,278
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313E06.bB6Ng01-313E06.g
ACCGA104528GA104529
length1,1211,156
definitionB6Ng01-313E06.b B6Ng01-313E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,742,132 - 53,743,278)(53,613,245 - 53,614,438)
sequence
gaattcattatattgaatagtaacataactttatatccaatgaagcagca
aataaagtagaaagataattgttacatataaaaacatcactaaaaacatc
tgaggtcttgttcataccagctaaattactccctaaaaatataaacctat
aattatagcacactgtatgttttggaagctcaaagatggaattttgagtg
ttattagaagtttgaagtgataaaagtttagagatggacgagttcaccct
gtctcaaacgttacacaatattacatatatcaaagcatcacaatattcat
tataaatatgtacagatttcatgtatttttctactagctaatatttaaat
taatatatgcacatatattgccataaatttctgcatgtttgtgatttttt
cagttatccaaacgtaatctggttattatttgtagagtcaaagaaacaga
gacaaactgaaggcagaatagctttctgttcctaattttcatagcttatc
ttatcttcttgagcattttctgggtgtgataccttgtgctatatcgtcag
acctcaatatgcctaaattgaatgaacaccaaatggagaaaatttagaac
aagaacaattgtacactttgatttttttttatatttaaaattgtatagca
ctcttatctttgatgaaactatttgatgaaagagttgcagtgaggctgat
acatactgaggaatcaacatatcctgcagagtgtaaagttatgtgtgcat
gtgtgcgcatgcacacagacacatacacacctacaccacaccacacatac
taacacacacatgcacatacatacaaacaaagcacaggtttttccgattc
aaatatgtgcttcctacctgctgtatatgtgggaccctgaatttcccttt
tcctttgtacttcaaacagcacagaataatttatttgtttctttttcttt
tctctctttctttctcatctcttctttctttctttatatatatatatata
tatatatattactttatccactaagcttaacttcaaggagtaaataaaac
accacagtattgtctcagtgtatgccatttgtcataatttgagacatgtg
tcatgatatagtactttctgg

gaattcactaaaataagtagaaataaaatgcatttatttcttcttatagt
tattgaacattactgaaagaaactcaggattttttattcttactcccttt
taaaaggcaaaattattaaagacctaataagtttcaaattgtgtctctgg
gcacatctgcataaagtctattgtttgcctcactatttcagtcattattt
tatatatgtacagagaatcatataagattttaaaaagtatgaaaggaaaa
attttacagaaagtttaaggtacccagttaaatatttcccaaatactttg
tacatatttttgcattatctgtgtgagtagatatcataatttttctgtag
aaatgaaataagatgtttatacacttatatgcctacggtttattagaata
agttctcaaatctttcaccagtcgagccttgaattccaggtatcctttct
gtctcaggttgctgagattgtatacatgaaccataatggctaactctatt
ctaccttttaccttcctgtttaaaatgtataaagagttgaactaacacaa
gtcataaggaatagtcctgtaagtggtgtttttctgtttgttttgctttg
gtaaaagtgctcatatttgaacagtgatacagtaaaggtcacactacctt
taaaataaaatgatgaccaagcatatataaattttattaaaaaacaaatc
aattttagaataaccaggctaaagtgataaaataaatataatttattatc
tgaaattcaactttagcagaaatttcagactgtattggataattttgtct
aggacatcaaggtgccggaatgagagcctcagcagtgtagtgaggagcag
gattcagtgaaagggtgagtaagatgcctaaatttatcaagtttgccttg
ggatagtctactgttgaaatcctacaacatagacattttttagtctgaca
ttggcttatgattatattttctaaatggacatataccagtacctatttag
cctcattttatctcatatatatgtcatatactacttgtgtctgaacactc
atctacagatatcaggagagaccttcctacatacattctaattcaaggat
ctaatcatttgacatacaaatttggttacatttttgtatgtaccttgatt
ttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53742132_53743278
seq2: B6Ng01-313E06.b_43_1163 (reverse)

seq1  CCAGAAAGTACTATATCATGACACATGTCTCAAAATTATGACAAATGCCA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CCAGAAAGTACTATATCATGACACATGTCTC-AAATTATGACAAATGGCA  49

seq1  ATTACACTGAGACAATACTGTTGGTGTTTTATTTACTCCTTTGAAGTTAA  100
        |||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  --TACACTGAGACAATACTG-TGGTGTTTTATTTACTCC-TTGAAGTTAA  95

seq1  GCTTTAGTGGGATAAAGTAAATAATAATAATAATAATAATAATAATAATA  150
      || ||||| ||||||||          |||||   |||   |||   |||
seq2  GC-TTAGT-GGATAAAG----------TAATA--TATATATATATATATA  131

seq1  ATAATAAAGAAAGGAAAGAAGAGATGAGAAAAGAAAAGAAGAGAAAAGAA  200
         ||||||||| ||||||||||||||| |||||||   |||||||||||
seq2  TATATAAAGAAA-GAAAGAAGAGATGAG-AAAGAAA--GAGAGAAAAGAA  177

seq1  AAAAGAAAACAAATAAATTATTCTTGTGCTGTTTGAAGTACAAAGGAAAA  250
      |||   ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAA--GAAACAAATAAATTATTC-TGTGCTGTTTGAAGTACAAAGGAAAA  224

seq1  GGGAAATTCAGGGTCCCACATATACAGCAGGTAGGAAGCACATATTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTCAGGGTCCCACATATACAGCAGGTAGGAAGCACATATTTGAA  274

seq1  TCGGAAAAACCTGTGCTTTGTTTGTATGTATGTGCATGTGTGTGTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAAACCTGTGCTTTGTTTGTATGTATGTGCATGTGTGTGTTAGTA  324

seq1  TGTGTGGTGTGGTGTAGGTGTGTATGTGTCTGTGTGCATGCGCACACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGTGGTGTAGGTGTGTATGTGTCTGTGTGCATGCGCACACATG  374

seq1  CACACATAACTTTACACTCTGCAGGATATGTTGATTCCTCAGTATGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAACTTTACACTCTGCAGGATATGTTGATTCCTCAGTATGTATC  424

seq1  AGCCTCACTGCAACTCTTTCATCAAATAGTTTCATCAAAGATAAGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACTGCAACTCTTTCATCAAATAGTTTCATCAAAGATAAGAGTGC  474

seq1  TATACAATTTTAAATATAAAAAAAAATCAAAGTGTACAATTGTTCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTTTAAATATAAAAAAAAATCAAAGTGTACAATTGTTCTTGTT  524

seq1  CTAAATTTTCTCCATTTGGTGTTCATTCAATTTAGGCATATTGAGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTCTCCATTTGGTGTTCATTCAATTTAGGCATATTGAGGTCTG  574

seq1  ACGATATAGCACAAGGTATCACACCCAGAAAATGCTCAAGAAGATAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATAGCACAAGGTATCACACCCAGAAAATGCTCAAGAAGATAAGAT  624

seq1  AAGCTATGAAAATTAGGAACAGAAAGCTATTCTGCCTTCAGTTTGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGAAAATTAGGAACAGAAAGCTATTCTGCCTTCAGTTTGTCTCT  674

seq1  GTTTCTTTGACTCTACAAATAATAACCAGATTACGTTTGGATAACTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGACTCTACAAATAATAACCAGATTACGTTTGGATAACTGAAA  724

seq1  AAATCACAAACATGCAGAAATTTATGGCAATATATGTGCATATATTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAAACATGCAGAAATTTATGGCAATATATGTGCATATATTAATT  774

seq1  TAAATATTAGCTAGTAGAAAAATACATGAAATCTGTACATATTTATAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAGCTAGTAGAAAAATACATGAAATCTGTACATATTTATAATG  824

seq1  AATATTGTGATGCTTTGATATATGTAATATTGTGTAACGTTTGAGACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTGATGCTTTGATATATGTAATATTGTGTAACGTTTGAGACAGG  874

seq1  GTGAACTCGTCCATCTCTAAACTTTTATCACTTCAAACTTCTAATAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCGTCCATCTCTAAACTTTTATCACTTCAAACTTCTAATAACAC  924

seq1  TCAAAATTCCATCTTTGAGCTTCCAAAACATACAGTGTGCTATAATTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTCCATCTTTGAGCTTCCAAAACATACAGTGTGCTATAATTATA  974

seq1  GGTTTATATTTTTAGGGAGTAATTTAGCTGGTATGAACAAGACCTCAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATATTTTTAGGGAGTAATTTAGCTGGTATGAACAAGACCTCAGAT  1024

seq1  GTTTTTAGTGATGTTTTTATATGTAACAATTATCTTTCTACTTTATTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGATGTTTTTATATGTAACAATTATCTTTCTACTTTATTTGC  1074

seq1  TGCTTCATTGGATATAAAGTTATGTTACTATTCAATATAATGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATTGGATATAAAGTTATGTTACTATTCAATATAATGAATTC  1121


seq1: chr16_53613245_53614438
seq2: B6Ng01-313E06.g_64_1219

seq1  GAATTCACTAAAATAAGTAGAAATAAAATGCATTTATTTCTTCTTATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAATAAGTAGAAATAAAATGCATTTATTTCTTCTTATAGT  50

seq1  TATTGAACATTACTGAAAGAAACTCAGGATTTTTTATTCTTACTCCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACATTACTGAAAGAAACTCAGGATTTTTTATTCTTACTCCCTTT  100

seq1  TAAAAGGCAAAATTATTAAAGACCTAATAAGTTTCAAATTGTGTCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCAAAATTATTAAAGACCTAATAAGTTTCAAATTGTGTCTCTGG  150

seq1  GCACATCTGCATAAAGTCTATTGTTTGCCTCACTATTTCAGTCATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTGCATAAAGTCTATTGTTTGCCTCACTATTTCAGTCATTATTT  200

seq1  TATATATGTACAGAGAATCATATAAGATTTTAAAAAGTATGAAAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTACAGAGAATCATATAAGATTTTAAAAAGTATGAAAGGAAAA  250

seq1  ATTTTACAGAAAGTTTAAGGTACCCAGTTAAATATTTCCCAAATACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGAAAGTTTAAGGTACCCAGTTAAATATTTCCCAAATACTTTG  300

seq1  TACATATTTTTGCATTATCTGTGTGAGTAGATATCATAATTTTTCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTTTGCATTATCTGTGTGAGTAGATATCATAATTTTTCTGTAG  350

seq1  AAATGAAATAAGATGTTTATACACTTATATGCCTACGGTTTATTAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATAAGATGTTTATACACTTATATGCCTACGGTTTATTAGAATA  400

seq1  AGTTCTCAAATCTTTCACCAGTCGAGCCTTGAATTCCAGGTATCCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAAATCTTTCACCAGTCGAGCCTTGAATTCCAGGTATCCTTTCT  450

seq1  GTCTCAGGTTGCTGAGATTGTATACATGAACCATAATGGCTAACTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTTGCTGAGATTGTATACATGAACCATAATGGCTAACTCTATT  500

seq1  CTACCTTTTACCTTCCTGTTTAAAATGTATAAAGAGTTGAACTAACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTTACCTTCCTGTTTAAAATGTATAAAGAGTTGAACTAACACAA  550

seq1  GTCATAAGGAATAGTCCTGTAAGTGGTGTTTTTCTGTTTGTTTTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGGAATAGTCCTGTAAGTGGTGTTTTTCTGTTTGTTTTGCTTTG  600

seq1  GTAAAAGTGCTCATATTTGAACAGTGATACAGTAAAGGTCACACTACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTGCTCATATTTGAACAGTGATACAGTAAAGGTCACACTACCTT  650

seq1  TAAAATAAAATGATGACCAAGCATATATAAATTTTATTAAAAAACAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATGATGACCAAGCATATATAAATTTTATTAAAAAACAAATC  700

seq1  AATTTTAGAATAACCAGGCTAAAGTGATAAAATAAATATAATTTATTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGAATAACCAGGCTAAAGTGATAAAATAAATATAATTTATTATC  750

seq1  TGAAATTCAACTTTAGCAGAAATTTCAGACTGTATTGGATAATTTTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCAACTTTAGCAGAAATTTCAGACTGTATTGGATAATTTTGTCT  800

seq1  AGGACATCAAGGTGCCGGAATGAGAGCCTCAGCAGTGTAGTGAGGAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCAAGGTGCCGGAATGAGAGCCTCAGCAGTGTAGTGAGGAGCAG  850

seq1  GATTCAGTG-AAGGGTGAGTAAGATGCCTAAATTTATCAAGTTTGCCTTG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTGAAAGGGTGAGTAAGATGCCTAAATTTATCAAGTTTGCCTTG  900

seq1  GGATAGTCTACTGTTGAAATCCTACAACATAGACATTTTTTAGGTCTGAC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGATAGTCTACTGTTGAAATCCTACAACATAGACATTTTTTA-GTCTGAC  949

seq1  ATTGGCTTATGATTATA-TTTCTAAATGGACATAATACCAATTACCTATT  998
      ||||||||||||||||| ||||||||||||||| ||||| | ||||||||
seq2  ATTGGCTTATGATTATATTTTCTAAATGGACAT-ATACC-AGTACCTATT  997

seq1  TAGCCTCAATTTTATCTCCAATTATTAATATGTTCATAATACTACTTGTG  1048
      ||||||| ||||||||||     ||  ||||| |||| ||||||||||||
seq2  TAGCCTC-ATTTTATCTC-----ATATATATG-TCAT-ATACTACTTGTG  1039

seq1  TTCTGAAACAACTCATTCCTACCAAGATAAATCAGGAGAGACTTTCTTTA  1098
       ||||||   ||||||  ||||  ||||  |||||||||||| |||  ||
seq2  -TCTGAA--CACTCAT--CTAC--AGAT--ATCAGGAGAGACCTTC-CTA  1079

seq1  CATTACATTCTAAATTTCTAGTGATCTAATCTATTTGACCATTACCAAAA  1148
      || ||||||||||  ||| || ||||||||| |||||||   |||  |||
seq2  CA-TACATTCTAA--TTCAAG-GATCTAATC-ATTTGAC--ATAC--AAA  1120

seq1  TATTGTGTACCACTTTTTTGTATGTAACTTTTGAAATTTTTTATGA  1194
      | | ||     || |||||||||||| |  ||||    ||||||||
seq2  TTTGGT----TACATTTTTGTATGTACC--TTGA----TTTTATGA  1156


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