gaattcaatcacccctaggactaaaaaaataatgtcacagaacacaagga
atgacagagtagattttgtctgacactatcaagatcttggcctgcataaa
atttctataaggtaaaatttaaaatcgtctcacgttatgctttgggtaat
atgtctacctttaaaaattttataactaaaatgttgaacctccttaaagg
aagggtttctgcaggctgcaaaatgggaaaactgcaagcttcatcagaaa
gagagtgtatcaatgttaattaagcattcattagaaaggaaggcagagtg
agctgtgggagaatcagagagtaagatatcactgttggtaatttagaaag
tcagaataacctgtcttgattagaggttcaacatcagacttttcagggaa
aaattcagtgaagcccagaaaggggaggggcgatcttcctcttgcttctt
ctagttttcattatggatttaaaggacagttgtgttaaaagactgagtgg
gttctttttacaaggtcagtaaagaagggaaaagcagccacagtgtgaat
gtgaggtctccccagtccttgcaaggattgattaagaaagctattgttta
aaaaaaaaaaaagcagctaattaaagcaattaacccagaatcaggcagag
cagctggtggggattttccaggtaaagcctggacttgctttgatgtccca
ctctagatggtagagtccagggtctcatggttttcaccaaaagataagag
taaattttactttagaccagcaaggaatccaaggttttgcttaagttaag
tgataattgatcatttgtgaggagaaatcagaattggctgagtgaactca
aaaataatatcatgtaagctgtaagggaaagtaggtattttgctctatta
attttgctcttgtaatagtatatcttagtttgctgcttacttttttaata
ttttaaatattgattgcggtatgagtttgtgaatgcactcatgactgatg
tccctgtgtggacatcaggagacaatgtgcgctggtgtgagtttggctct
ccccattaccatgtgggtcctggagaaccagaatagattcattcaggtgg
ccagcaagccctctttcccacggatataattttgatgatccaatctttc

atgaaattcacaaacaaatggacagatctagaaaatatcatcctgactgg
ggtaactcagtcacaaaagaacacacatgatgtttactcagtgataactg
gatattagtcaaagagcatggaatacccagtatataattcactgagcaca
tgtagctcaagaggaagggagacgaataagtggatgcttcaatcctactt
agaagggggaacaatataatcaagggaagtagaaggtgggagggacttgt
gaggaagagaggatgggagaggaaaaatacgggcagaatccggtatggga
ggagatggaggagatatacatagggtcaggaaattgaacagaggtgtgta
gcaatagggcatggagaacttggagtaacaaccagaaagtcccagatgca
aggaaagtaagatcctccaaggaccccatgaggatggcagtatctgaaat
accccaccaagctgagggataacctgtagagaccatttct

seq1: chr16_40387177_40388321
seq2: B6Ng01-313I02.b_45_1193 (reverse)

seq1  GAAAAATTGAATCATCAAAATTATA-CAGTGGGAAAGA-GGCTTGCTGCC  48
      |||| |||| ||||||||||||||| | |||||||||| ||||||||| |
seq2  GAAAGATTGGATCATCAAAATTATATCCGTGGGAAAGAGGGCTTGCTGGC  50

seq1  CAACTTGATG-ATCTA-TCTGGTTCT-CAGGACCCACATGGTAAATGGGG  95
      || ||  ||| ||||| ||||||||| ||||||||||||||| |||||||
seq2  CACCTGAATGAATCTATTCTGGTTCTCCAGGACCCACATGGT-AATGGGG  99

seq1  AGAGCC-AACTCACACCAGCGCACATTGTCTCCTGATGTCCACACAGGGA  144
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAACTCACACCAGCGCACATTGTCTCCTGATGTCCACACAGGGA  149

seq1  CATCAGTCATGAGTGCATTCACAAACTCATACCGCAATCAATATTTAAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCATGAGTGCATTCACAAACTCATACCGCAATCAATATTTAAAA  199

seq1  TATTAAAAAAGTAAGCAGCAAACCTAAGATATACTATTACAAGAGCAAAA  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTAAAAAAGTAAGCAGCAAA-CTAAGATATACTATTACAAGAGCAAAA  248

seq1  TTAATAGAGCAAAATACCTACTTTCCCTTACAGCTTACATGATATTATTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAGCAAAATACCTACTTTCCCTTACAGCTTACATGATATTATTT  298

seq1  TTGAGTTCACTCAGCCAATTCTGATTTCTCCTCACAAATGATCAATTATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCACTCAGCCAATTCTGATTTCTCCTCACAAATGATCAATTATC  348

seq1  ACTTAACTTAAGCAAAACCTTGGATTCCTTGCTGGTCTAAAGTAAAATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTTAAGCAAAACCTTGGATTCCTTGCTGGTCTAAAGTAAAATTT  398

seq1  ACTCTTATCTTTTGGTGAAAACCATGAGACCCTGGACTCTACCATCTAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATCTTTTGGTGAAAACCATGAGACCCTGGACTCTACCATCTAGA  448

seq1  GTGGGACATCAAAGCAAGTCCAGGCTTTACCTGGAAAATCCCCACCAGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACATCAAAGCAAGTCCAGGCTTTACCTGGAAAATCCCCACCAGCT  498

seq1  GCTCTGCCTGATTCTGGGTTAATTGCTTTAATTAGCTGCTTTTTTTTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTGATTCTGGGTTAATTGCTTTAATTAGCTGCTTTTTTTTTTT  548

seq1  TTAAACAATAGCTTTCTTAATCAATCCTTGCAAGGACTGGGGAGACCTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATAGCTTTCTTAATCAATCCTTGCAAGGACTGGGGAGACCTCA  598

seq1  CATTCACACTGTGGCTGCTTTTCCCTTCTTTACTGACCTTGTAAAAAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACACTGTGGCTGCTTTTCCCTTCTTTACTGACCTTGTAAAAAGAA  648

seq1  CCCACTCAGTCTTTTAACACAACTGTCCTTTAAATCCATAATGAAAACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAGTCTTTTAACACAACTGTCCTTTAAATCCATAATGAAAACTA  698

seq1  GAAGAAGCAAGAGGAAGATCGCCCCTCCCCTTTCTGGGCTTCACTGAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAAGAGGAAGATCGCCCCTCCCCTTTCTGGGCTTCACTGAATT  748

seq1  TTTCCCTGAAAAGTCTGATGTTGAACCTCTAATCAAGACAGGTTATTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAAAAGTCTGATGTTGAACCTCTAATCAAGACAGGTTATTCTG  798

seq1  ACTTTCTAAATTACCAACAGTGATATCTTACTCTCTGATTCTCCCACAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAATTACCAACAGTGATATCTTACTCTCTGATTCTCCCACAGC  848

seq1  TCACTCTGCCTTCCTTTCTAATGAATGCTTAATTAACATTGATACACTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGCCTTCCTTTCTAATGAATGCTTAATTAACATTGATACACTCT  898

seq1  CTTTCTGATGAAGCTTGCAGTTTTCCCATTTTGCAGCCTGCAGAAACCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATGAAGCTTGCAGTTTTCCCATTTTGCAGCCTGCAGAAACCCT  948

seq1  TCCTTTAAGGAGGTTCAACATTTTAGTTATAAAATTTTTAAAGGTAGACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAGGAGGTTCAACATTTTAGTTATAAAATTTTTAAAGGTAGACA  998

seq1  TATTACCCAAAGCATAACGTGAGACGATTTTAAATTTTACCTTATAGAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCAAAGCATAACGTGAGACGATTTTAAATTTTACCTTATAGAAA  1048

seq1  TTTTATGCAGGCCAAGATCTTGATAGTGTCAGACAAAATCTACTCTGTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCAGGCCAAGATCTTGATAGTGTCAGACAAAATCTACTCTGTCA  1098

seq1  TTCCTTGTGTTCTGTGACATTATTTTTTTAGTCCTAGGGGTGATTGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGTTCTGTGACATTATTTTTTTAGTCCTAGGGGTGATTGAATT  1148

seq1  C  1145
      |
seq2  C  1149