BAC Information

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BAC

Clone NameB6Ng01-315D06
Chromosome16 (Build37)
Map Location 91,828,355 - 91,962,040
singlet/doubletdoublet
Overlap geneItsn1, Atp5o
Upstream gene4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315D06.bB6Ng01-315D06.g
ACCGA105913GA105914
length1,1211,064
definitionB6Ng01-315D06.b B6Ng01-315D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,960,933 - 91,962,040)(91,828,355 - 91,829,425)
sequence
gaattcagtatgccccgtcagccccacagaaaaataatgaaatctaggag
tcaacgagactgaatgcatttctaagcgttatgcaatgttttcacattat
aaaaaacattattggaaaagaaaaggaaatagttaccggaaatgcagcaa
aagccggggatcggggatcagggatcaggctaactccatgcctggtggag
agtcaggaacaggctcatgacaagagtctccttttcaagtttggagtgag
aatcaaaagtccacattatttgcatcgttgagcaacggcattgaagattc
aatgtttaaaccacaaatgcttttgtgttacagcaacttagtaattttat
tacctcgcatgctttaattaaatgtattaaatccattccctgaacataaa
agtcctagggatagatataagacaggtaactgtttttctttttttattat
tattatggaaatattcaaacatgcacaaaaactagaggagatggccttaa
taaacctctcaatgtttatctacttttatttcctgtggatgcgattaaaa
aaaaaaataccttactaagagaagggtttacttagctcacaatcccaggt
tgcagtctatcacttcagggaagtcaaggcaggagcctgaagcagctggt
tacgcctacagtcaagagcagagagaacggggagtcggggcctgcatggg
agcgcccagctgggtctctctgttctcacacagttcaggatccctgccaa
gggaatagtgatgctcacagtaggcagggcttcccatctaacctgaacat
ccttcatagacatgtgcacaagccaggttcagctagacaccccctcattg
agataattatatggtgtatccagctgtcaacactgaccaccacaatgctc
atcacactgcgtctagcatcattaccaatcgccagtctttattttcatct
acctccaggtaccacatcgtgttgtttcagatttaaaaaaaatttttttt
tattaaaaatgtatttttataggtacccagtgttctgcctgcaataatat
gcctccatgccaaggagaagggccgcccagatctcattatagatgattgt
ggagccaccaatgtgcttgct
gaattcccttcataaacatgaaagttgaccatgttccacactgttagcta
aagttctcctaacttgtgtcctcttctgaaataggagactcgcttcttac
cctcaaaagagccttggaagcaaaggagctggcccggcagcagctccggg
agcagctggacgaggtggagagagagaccaggtcaaagctgcaggagatt
gatgttttcaacaaccagctgaaggtgactcctgggtgctgggccgcctc
ccctttgcttggcttgtgagcagtggttcagggcctctgtgtgaaggctg
tcgtggtgcccgctgcccctccagttgtgcttgctttctctgaggtctgt
aaggtagcctgtgttagggccctgcccctgcccctgcccacctttcacac
ctttcttttttttgcctatttataaacatgtcacatccaaagccaggccc
aacgtgctctcttctctgtgttcactgagggttacccaggtgcttttctg
ttttaactgaaatttccctgccactccagtgatcgtctggagtatgacct
gtcttatctccctcactttaaatgcctttcagctgaattagttcatgggg
tcatggctctgtctctggcacagctggtgatggctttgtcaccctgcaca
gtaattcaggaaaaccacacacacaagcctctttctgtatggtgttccat
tgttttaatcacgttaactcaggcttgccatagtggcacacaccttaaat
cccagcgcctggtaggctgaagcagccgacctctgagtcagggcagctga
ggctgcataatgagatccttttcagaagtaaacggctgactgactgactg
actgactgactgactgacaacatagataaataggtagttagatgagacag
tggatagttcattgcattccaaaaatattcacttttagtttcctaacctt
aaaattcccttataatttactatgtatggcccatttagccctatactcag
aaataaactaaaaccttactactaaagaaattttaactagaaagtatagg
tgagggtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91960933_91962040
seq2: B6Ng01-315D06.b_45_1165 (reverse)

seq1  AGCAACCACA-TGGTGGCT-CACAACCATCTATAATGAGATCT-GGCG--  45
      ||||| |||| |||||||| ||||| ||||||||||||||||| ||||  
seq2  AGCAAGCACATTGGTGGCTCCACAATCATCTATAATGAGATCTGGGCGGC  50

seq1  CCCTCTCC-TGGCATGGAGGCATAT--ATGCAGGCAGAACACTGGGTACC  92
      || ||||| ||||||||||||||||   ||||||||||||||||||||||
seq2  CCTTCTCCTTGGCATGGAGGCATATTATTGCAGGCAGAACACTGGGTACC  100

seq1  TA-ATAAATACATTTTTAAT-AAAAAAATTTTTTTTAAAATCTGAAACAA  140
      || | ||||||||||||||| ||||||| ||||||| |||||||||||||
seq2  TATAAAAATACATTTTTAATAAAAAAAAATTTTTTTTAAATCTGAAACAA  150

seq1  CACGATGTGGTACCTGGA-GTAGATGAAA--TAAGACTGGCGATTGGTAA  187
      |||||||||||||||||| ||||||||||   ||||||||||||||||||
seq2  CACGATGTGGTACCTGGAGGTAGATGAAAATAAAGACTGGCGATTGGTAA  200

seq1  TGATGCTAGACGCAGTGTGATGAGCATTGTGGTGGTCAGTGTTGACAGCT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAGACGCAGTGTGATGAGCATTGTGGTGGTCAGTGTTGACAGCT  250

seq1  GGATACACCATATAATTATCTCAATGAGGGGGTGTCTAGCTGAACCTGGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACCATATAATTATCTCAATGAGGGGGTGTCTAGCTGAACCTGGC  300

seq1  TTGTGCACATGTCTATGAAGGATGTTCAGGTTAGATGGGAAGCCCTGCCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACATGTCTATGAAGGATGTTCAGGTTAGATGGGAAGCCCTGCCT  350

seq1  ACTGTGAGCATCACTATTCCCTTGGCAGGGATCCTGAACTGTGTGAGAAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGCATCACTATTCCCTTGGCAGGGATCCTGAACTGTGTGAGAAC  400

seq1  AGAGAGACCCAGCTGGGCGCTCCCATGCAGGCCCCGACTCCCCGTTCTCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACCCAGCTGGGCGCTCCCATGCAGGCCCCGACTCCCCGTTCTCT  450

seq1  CTGCTCTTGACTGTAGGCGTAACCAGCTGCTTCAGGCTCCTGCCTTGACT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGACTGTAGGCGTAACCAGCTGCTTCAGGCTCCTGCCTTGACT  500

seq1  TCCCTGAAGTGATAGACTGCAACCTGGGATTGTGAGCTAAGTAAACCCTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGTGATAGACTGCAACCTGGGATTGTGAGCTAAGTAAACCCTT  550

seq1  CTCTTAGTAAGGTATTTTTTTTTTTAATCGCATCCACAGGAAATAAAAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTAAGGTATTTTTTTTTTTAATCGCATCCACAGGAAATAAAAGT  600

seq1  AGATAAACATTGAGAGGTTTATTAAGGCCATCTCCTCTAGTTTTTGTGCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACATTGAGAGGTTTATTAAGGCCATCTCCTCTAGTTTTTGTGCA  650

seq1  TGTTTGAATATTTCCATAATAATAATAAAAAAAGAAAAACAGTTACCTGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAATATTTCCATAATAATAATAAAAAAAGAAAAACAGTTACCTGT  700

seq1  CTTATATCTATCCCTAGGACTTTTATGTTCAGGGAATGGATTTAATACAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCTATCCCTAGGACTTTTATGTTCAGGGAATGGATTTAATACAT  750

seq1  TTAATTAAAGCATGCGAGGTAATAAAATTACTAAGTTGCTGTAACACAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAGCATGCGAGGTAATAAAATTACTAAGTTGCTGTAACACAAA  800

seq1  AGCATTTGTGGTTTAAACATTGAATCTTCAATGCCGTTGCTCAACGATGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTGGTTTAAACATTGAATCTTCAATGCCGTTGCTCAACGATGC  850

seq1  AAATAATGTGGACTTTTGATTCTCACTCCAAACTTGAAAAGGAGACTCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTGGACTTTTGATTCTCACTCCAAACTTGAAAAGGAGACTCTT  900

seq1  GTCATGAGCCTGTTCCTGACTCTCCACCAGGCATGGAGTTAGCCTGATCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAGCCTGTTCCTGACTCTCCACCAGGCATGGAGTTAGCCTGATCC  950

seq1  CTGATCCCCGATCCCCGGCTTTTGCTGCATTTCCGGTAACTATTTCCTTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCCGATCCCCGGCTTTTGCTGCATTTCCGGTAACTATTTCCTTT  1000

seq1  TCTTTTCCAATAATGTTTTTTATAATGTGAAAACATTGCATAACGCTTAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAATAATGTTTTTTATAATGTGAAAACATTGCATAACGCTTAG  1050

seq1  AAATGCATTCAGTCTCGTTGACTCCTAGATTTCATTATTTTTCTGTGGGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATTCAGTCTCGTTGACTCCTAGATTTCATTATTTTTCTGTGGGG  1100

seq1  CTGACGGGGCATACTGAATTC  1108
      |||||||||||||||||||||
seq2  CTGACGGGGCATACTGAATTC  1121

seq1: chr16_91828355_91829425
seq2: B6Ng01-315D06.g_67_1130

seq1  GAATTCCCTTCATAAACATGAAAGTTGACCATGTTCCACACTGTTAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCATAAACATGAAAGTTGACCATGTTCCACACTGTTAGCTA  50

seq1  AAGTTCTCCTAACTTGTGTCCTCTTCTGAAATAGGAGACTCGCTTCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCCTAACTTGTGTCCTCTTCTGAAATAGGAGACTCGCTTCTTAC  100

seq1  CCTCAAAAGAGCCTTGGAAGCAAAGGAGCTGGCCCGGCAGCAGCTCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAGAGCCTTGGAAGCAAAGGAGCTGGCCCGGCAGCAGCTCCGGG  150

seq1  AGCAGCTGGACGAGGTGGAGAGAGAGACCAGGTCAAAGCTGCAGGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGACGAGGTGGAGAGAGAGACCAGGTCAAAGCTGCAGGAGATT  200

seq1  GATGTTTTCAACAACCAGCTGAAGGTGACTCCTGGGTGCTGGGCCGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTCAACAACCAGCTGAAGGTGACTCCTGGGTGCTGGGCCGCCTC  250

seq1  CCCTTTGCTTGGCTTGTGAGCAGTGGTTCAGGGCCTCTGTGTGAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTTGGCTTGTGAGCAGTGGTTCAGGGCCTCTGTGTGAAGGCTG  300

seq1  TCGTGGTGCCCGCTGCCCCTCCAGTTGTGCTTGCTTTCTCTGAGGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTGCCCGCTGCCCCTCCAGTTGTGCTTGCTTTCTCTGAGGTCTGT  350

seq1  AAGGTAGCCTGTGTTAGGGCCCTGCCCCTGCCCCTGCCCACCTTTCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCCTGTGTTAGGGCCCTGCCCCTGCCCCTGCCCACCTTTCACAC  400

seq1  CTTTCTTTTTTTTGCCTATTTATAAACATGTCACATCCAAAGCCAGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTTGCCTATTTATAAACATGTCACATCCAAAGCCAGGCCC  450

seq1  AACGTGCTCTCTTCTCTGTGTTCACTGAGGGTTACCCAGGTGCTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCTCTCTTCTCTGTGTTCACTGAGGGTTACCCAGGTGCTTTTCTG  500

seq1  TTTTAACTGAAATTTCCCTGCCACTCCAGTGATCGTCTGGAGTATGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGAAATTTCCCTGCCACTCCAGTGATCGTCTGGAGTATGACCT  550

seq1  GTCTTATCTCCCTCACTTTAAATGCCTTTCAGCTGAATTAGTTCATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCTCCCTCACTTTAAATGCCTTTCAGCTGAATTAGTTCATGGGG  600

seq1  TCATGGCTCTGTCTCTGGCACAGCTGGTGATGGCTTTGTCACCCTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTCTGTCTCTGGCACAGCTGGTGATGGCTTTGTCACCCTGCACA  650

seq1  GTAATTCAGGAAAACCACACACACAAGCCTCTTTCTGTATGGTGTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAGGAAAACCACACACACAAGCCTCTTTCTGTATGGTGTTCCAT  700

seq1  TGTTTTAATCACGTTAACTCAGGCTTGCCATAGTGGCACACACCTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATCACGTTAACTCAGGCTTGCCATAGTGGCACACACCTTAAAT  750

seq1  CCCAGCGCCTGGTAGGCTGAAGCAGGCCGACCTCTGAGTCAGGGGCAGCT  800
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CCCAGCGCCTGGTAGGCTGAAGCA-GCCGACCTCTGAGTCA-GGGCAGCT  798

seq1  GAGGCTGCATAATGAGATCCTTTTCAGAAGTAAACGGCTGACTGACTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCATAATGAGATCCTTTTCAGAAGTAAACGGCTGACTGACTGAC  848

seq1  TGACTGACTGACTGACTGACAACATAGATAAATAGGTAGTTAGATGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACTGACTGACTGACAACATAGATAAATAGGTAGTTAGATGAGAC  898

seq1  AGTGGATAGTTCATTGCATTCCAAAAATATTCAC-TTTAGTTTTCTAACC  949
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AGTGGATAGTTCATTGCATTCCAAAAATATTCACTTTTAGTTTCCTAACC  948

seq1  TTAAAATT-CCTTATAATTTACTATGTATGGCCCATTTAGCCCCTAATAC  998
      |||||||| ||||||||||||||||||||||||||||||||||   ||||
seq2  TTAAAATTCCCTTATAATTTACTATGTATGGCCCATTTAGCCC--TATAC  996

seq1  TCAGAAATAAAACTAAAACCTTTACTACTAAAAGAAAATTTTAAACTAGA  1048
      |||||||| ||||||||||| |||||||| |||||||  ||| |||||||
seq2  TCAGAAAT-AAACTAAAACC-TTACTACT-AAAGAAA--TTTTAACTAGA  1041

seq1  AAGTATAGTTGAGGGTTTTTTTT  1071
      |||||||| ||||||||||||||
seq2  AAGTATAGGTGAGGGTTTTTTTT  1064