BAC Information

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BAC

Clone NameB6Ng01-315N15
Chromosome16 (Build37)
Map Location 77,296,963 - 77,383,607
singlet/doubletdoublet
Overlap genenone
Upstream geneNrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315N15.bB6Ng01-315N15.g
ACCGA106393GA106394
length4461,093
definitionB6Ng01-315N15.b B6Ng01-315N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,296,963 - 77,297,414)(77,382,516 - 77,383,607)
sequence
caaaaccctaaatactctgaaatgtcaagccttttgattttgaaatagac
aacgttcatggaagtgtacacatctgatctcctctgatgtattatactac
aaagcactgcattgcatccaggctatgaggtgtgaatgagacatgtttgg
aaacactcttgaacatgagttcagagtgggcctcgtctccaaaatatctc
ataatatctatccagcatgttaaaacctgaaaaagagattcaaggttcct
caaatgtctgatccaagaatttttgatacagaataatatacctatattgg
atagtattaagagtacataaaaattaattagtgggttgctttaaattctg
tgctgttttagtgtgtatcataaaaaaaatgtttttttttccattgattt
ctcagatagaatttagaagtcactagttttctagatttctaagaat

gaattcctcagtgaaatgttttcagacttgaaattgtgttggtaaaagac
agaaatgcagtaataaccatgtttcaagaatcattcattatgcttaatag
atttgatttaatggactaagacacgggaagaatgctgtggcttaccttgt
tttactgtttccattttgcaacactaattctttccctatataaacatctc
agaagtaataagatcacttggagcaagactagaattgttctctcccagtt
ctataatttcacaggacagatttctcacattcagagataatcagatcatc
aagacaaggccatctggagaagggaagcttcaaagaccagagtgactgta
actgtattagcggagccctctgcatgacactttcccttgtgtcatcatgc
taaccactaaggggtggatctgccccataatgtgggagatatacgccttc
aggcaagaagaagataggaagcaaatgaagtttaaaatacagaaaattga
ttagaaacagaattgaattagcacccagaaattagattgcttatttaatt
atttcatttagttttcattctccttcaattactttggaatctttgtaata
aatgaagtcaaatcagagagggaaaagttaggctttctctttttatgaaa
atgaggctgttacacaaactaaaaacgtacagacatctgataaactcttc
aggtttgtgattgcagcttgtagaaaacttagttaaatgacagtgttttt
ttttcttcttctaattttctgtaacttgtaaagagaatttcaaatgtcta
aatcacatattttggttgaatatatgttttttgaaaaatcaatattattt
gaaatttaaaatgctgctgtagatgatactatcattcaggcacttagaac
ttactattcaaacttatatttatactaaaaaattaaagggaggctagttt
caaacatggaagagatgagcgagaagtataaagggttacaaatttgaaag
tagtgtgtagcagtggaggaggggggccactggagaatagcactagaaag
tctcagatgcaaggaccaagagaattccctggaccccatcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77296963_77297414
seq2: B6Ng01-315N15.b_48_499

seq1  GAATTCCAAAACCCTAAATACTCTGAAATGTCAAGCCTTTTGATTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACCCTAAATACTCTGAAATGTCAAGCCTTTTGATTTTGAA  50

seq1  ATAGACAACGTTCATGGAAGTGTACACATCTGATCTCCTCTGATGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACGTTCATGGAAGTGTACACATCTGATCTCCTCTGATGTATTA  100

seq1  TACTACAAAGCACTGCATTGCATCCAGGCTATGAGGTGTGAATGAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAGCACTGCATTGCATCCAGGCTATGAGGTGTGAATGAGACAT  150

seq1  GTTTGGAAACACTCTTGAACATGAGTTCAGAGTGGGCCTCGTCTCCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAACACTCTTGAACATGAGTTCAGAGTGGGCCTCGTCTCCAAAA  200

seq1  TATCTCATAATATCTATCCAGCATGTTAAAACCTGAAAAAGAGATTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATAATATCTATCCAGCATGTTAAAACCTGAAAAAGAGATTCAAG  250

seq1  GTTCCTCAAATGTCTGATCCAAGAATTTTTGATACAGAATAATATACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAAATGTCTGATCCAAGAATTTTTGATACAGAATAATATACCTA  300

seq1  TATTGGATAGTATTAAGAGTACATAAAAATTAATTAGTGGGTTGCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATAGTATTAAGAGTACATAAAAATTAATTAGTGGGTTGCTTTAA  350

seq1  ATTCTGTGCTGTTTTAGTGTGTATCATAAAAAAAATGTTTTTTTTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGCTGTTTTAGTGTGTATCATAAAAAAAATGTTTTTTTTTCCAT  400

seq1  TGATTTCTCAGATAGAATTTAGAAGTCACTAGTTTTCTAGATTTCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCAGATAGAATTTAGAAGTCACTAGTTTTCTAGATTTCTAAGA  450

seq1  AT  452
      ||
seq2  AT  452


seq1: chr16_77382516_77383607
seq2: B6Ng01-315N15.g_67_1159 (reverse)

seq1  CCTGAT-GGGTCCAGGGAA-TCTCTTGGGTCCCTGGCATCTGAGACTTTC  48
      |||||| |||||||||||| ||||||||   ||| |||||||||||||||
seq2  CCTGATGGGGTCCAGGGAATTCTCTTGG--TCCTTGCATCTGAGACTTTC  48

seq1  TAGTGGCTA-TCTCCAGTG--CCCCCTCCTCCACTGCTACACACCTACTT  95
      |||| |||| |||||||||  |||||||||||||||||||||| ||||||
seq2  TAGT-GCTATTCTCCAGTGGCCCCCCTCCTCCACTGCTACACA-CTACTT  96

seq1  TCAAATTTGTAACCCTTTATACTTCTCGCTCATCTCCTTCCATGTTTG-A  144
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TCAAATTTGTAACCCTTTATACTTCTCGCTCATCT-CTTCCATGTTTGAA  145

seq1  ACTAGCCTCCCTTTAATTTTTTTAGTATAAATATAAGTTTGAATAGTAAG  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTAGCCTCCCTTTAA-TTTTTTAGTATAAATATAAGTTTGAATAGTAAG  194

seq1  TTCTAAGTGCCTGAATGATAGTATCATCTACAGCAGCATTTTAAATTTCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTGCCTGAATGATAGTATCATCTACAGCAGCATTTTAAATTTCA  244

seq1  AATAATATTGATTTTTCAAAAAACATATATTCAACCAAAATATGTGATTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTGATTTTTCAAAAAACATATATTCAACCAAAATATGTGATTT  294

seq1  AGACATTTGAAATTCTCTTTACAAGTTACAGAAAATTAGAAGAAG-AAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACATTTGAAATTCTCTTTACAAGTTACAGAAAATTAGAAGAAGAAAAA  344

seq1  AAAACACTGTCATTTAACTAAGTTTTCTACAAGCTGCAATCACAAACCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGTCATTTAACTAAGTTTTCTACAAGCTGCAATCACAAACCTG  394

seq1  AAGAGTTTATCAGATGTCTGTACGTTTTTAGTTTGTGTAACAGCCTCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTATCAGATGTCTGTACGTTTTTAGTTTGTGTAACAGCCTCATT  444

seq1  TTCATAAAAAGAGAAAGCCTAACTTTTCCCTCTCTGATTTGACTTCATTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAAGAGAAAGCCTAACTTTTCCCTCTCTGATTTGACTTCATTT  494

seq1  ATTACAAAGATTCCAAAGTAATTGAAGGAGAATGAAAACTAAATGAAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGATTCCAAAGTAATTGAAGGAGAATGAAAACTAAATGAAATA  544

seq1  ATTAAATAAGCAATCTAATTTCTGGGTGCTAATTCAATTCTGTTTCTAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAGCAATCTAATTTCTGGGTGCTAATTCAATTCTGTTTCTAAT  594

seq1  CAATTTTCTGTATTTTAAACTTCATTTGCTTCCTATCTTCTTCTTGCCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCTGTATTTTAAACTTCATTTGCTTCCTATCTTCTTCTTGCCTG  644

seq1  AAGGCGTATATCTCCCACATTATGGGGCAGATCCACCCCTTAGTGGTTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTATATCTCCCACATTATGGGGCAGATCCACCCCTTAGTGGTTAG  694

seq1  CATGATGACACAAGGGAAAGTGTCATGCAGAGGGCTCCGCTAATACAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGACACAAGGGAAAGTGTCATGCAGAGGGCTCCGCTAATACAGTT  744

seq1  ACAGTCACTCTGGTCTTTGAAGCTTCCCTTCTCCAGATGGCCTTGTCTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACTCTGGTCTTTGAAGCTTCCCTTCTCCAGATGGCCTTGTCTTG  794

seq1  ATGATCTGATTATCTCTGAATGTGAGAAATCTGTCCTGTGAAATTATAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGATTATCTCTGAATGTGAGAAATCTGTCCTGTGAAATTATAGA  844

seq1  ACTGGGAGAGAACAATTCTAGTCTTGCTCCAAGTGATCTTATTACTTCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGAGAACAATTCTAGTCTTGCTCCAAGTGATCTTATTACTTCTG  894

seq1  AGATGTTTATATAGGGAAAGAATTAGTGTTGCAAAATGGAAACAGTAAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTATATAGGGAAAGAATTAGTGTTGCAAAATGGAAACAGTAAAA  944

seq1  CAAGGTAAGCCACAGCATTCTTCCCGTGTCTTAGTCCATTAAATCAAATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAGCCACAGCATTCTTCCCGTGTCTTAGTCCATTAAATCAAATC  994

seq1  TATTAAGCATAATGAATGATTCTTGAAACATGGTTATTACTGCATTTCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCATAATGAATGATTCTTGAAACATGGTTATTACTGCATTTCTG  1044

seq1  TCTTTTACCAACACAATTTCAAGTCTGAAAACATTTCACTGAGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACCAACACAATTTCAAGTCTGAAAACATTTCACTGAGGAATTC  1093


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