BAC Information

Click to search

BAC

Clone NameB6Ng01-316A18
Chromosome16 (Build37)
Map Location 62,192,149 - 62,193,324
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316A18.bB6Ng01-316A18.g
ACCGA106540GA106541
length9761,191
definitionB6Ng01-316A18.b B6Ng01-316A18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtgtttt
tttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
aataggtcccatttgtcaattctcgatcttacagcacaaaccattgctgt
tctgttcagaaaattttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctgattttgtcccatgtatccta
tcagaccaccatggcctaagactgatcttcaataacaacataaataatgg
aaagccaacattcacgtggaaactgaacaacacttttctcaatgatacct
tggtcaaggaaggaataaagaaagaaattaaagactttttagagtttaat
gaaaatgaagccacaacgtacccaaacctttgggacacaatgaaagcatt
tctaagagggaaactcatagctctgagtgcctccaagaagaaacgggaga
gagcacatactagcagcttgacaacacatctaaaagctctagaaaaaaag
gaagcaaatttatctaagaggagtagacggcaggaaataatcaaactcag
gggtgaaatcaaccaggtggaaacaagaagaactattcaaagaattaacc
aaacgaggaattggttctttgagaaaatcaacaagatagataaaccctta
gctagactcactagagggcacagggacaaaatcctaattaacaaaatcag
aaatgaaaagggagacataacaacagatcctgaagaaatccaaaacacca
tcagatcctttctacaaaagcgatactcaacaaaactggaaaacctggac
gaaatggacaaatttctggacagata

gaattcaggtgccttatttaaagtgtcagaaatctttgggacttggtgaa
gggctcgtcaccatcctacaaaatatgaaatatgatcattaaatgttacc
tacacttgcttcagaagactttcaacacacgtcttctaaagcaaatagaa
ttcagtctatagatactcttgccaaaaatttctaatactatctgggctta
tttcttggctatagtgaagatactgtcgtaactgtatttcatagctcagc
aaaacccaataccactgcaataatccacaccatcaactgcaaacaccttt
taagatctagaaaaaacataagcttttacaatctagattaccaatacaat
cacatatgctactgatttcagagatggaaactaacacagatatgatgttt
atacactttaaccacaaaacacttaccaagtgacttctaatgtctcttaa
gaaattcagtgatatgtaagtaaatagagataaatatttcaaaacaaaga
tacaatggttgaggatatgcctctgtggattaagttcttgctgcacagta
tgaagatcttgattcaaatacccacaggccatgtaaaggcaagacattat
caaacatctttaatcccagtgcttctatggtgaggtggaaagcagaaaca
gaagaatacatagaaatttagaaatgaagtatcctgctatgcacacctat
aaaacttgagaaagaaactgggttttcaaaaaagctagaaccaaagcctg
tcacccaagactttcctctaaccttcacatatgtgaaatacttacatacc
tgcagttgcagttccacaaatctaggcacacatgtgtacacactcatgca
tgtcatgtacacatacagagatatataaacataccaaaaatgagaaaaac
aattaagaacataatggaaaattccagaaaaacagttttaaaatacaaaa
tagaaggtaataaaaattgaaaaattaaaagcatcaatgaatgaaatgga
aaagtaaaatagaagactgttaacaacatactaccaccaaagggaatttt
ttatgagcttcagaaaatacccaataaagtcacgttagcaaaaaatatcc
atctatgaaattcttagaagttgaaggaaacgtgaaagaaatattgcaag
ttattacagcaaaataacacaccaagaaaaatcctttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62192149_62193324
seq2: B6Ng01-316A18.g_69_1259

seq1  GAATTCAGGTGCCTTATTTAAAGTGTCAGAAATCTTTGGGACTTGGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCCTTATTTAAAGTGTCAGAAATCTTTGGGACTTGGTGAA  50

seq1  GGGCTCGTCACCATCCTACAAAATATGAAATATGATCATTAAATGTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGTCACCATCCTACAAAATATGAAATATGATCATTAAATGTTACC  100

seq1  TACACTTGCTTCAGAAGACTTTCAACACACGTCTTCTAAAGCAAATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGCTTCAGAAGACTTTCAACACACGTCTTCTAAAGCAAATAGAA  150

seq1  TTCAGTCTATAGATACTCTTGCCAAAAATTTCTAATACTATCTGGGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTATAGATACTCTTGCCAAAAATTTCTAATACTATCTGGGCTTA  200

seq1  TTTCTTGGCTATAGTGAAGATACTGTCGTAACTGTATTTCATAGCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCTATAGTGAAGATACTGTCGTAACTGTATTTCATAGCTCAGC  250

seq1  AAAACCCAATACCACTGCAATAATCCACACCATCAACTGCAAACACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAATACCACTGCAATAATCCACACCATCAACTGCAAACACCTTT  300

seq1  TAAGATCTAGAAAAAACATAAGCTTTTACAATCTAGATTACCAATACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTAGAAAAAACATAAGCTTTTACAATCTAGATTACCAATACAAT  350

seq1  CACATATGCTACTGATTTCAGAGATGGAAACTAACACAGATATGATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGCTACTGATTTCAGAGATGGAAACTAACACAGATATGATGTTT  400

seq1  ATACACTTTAACCACAAAACACTTACCAAGTGACTTCTAATGTCTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTTAACCACAAAACACTTACCAAGTGACTTCTAATGTCTCTTAA  450

seq1  GAAATTCAGTGATATGTAAGTAAATAGAGATAAATATTTCAAAACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAGTGATATGTAAGTAAATAGAGATAAATATTTCAAAACAAAGA  500

seq1  TACAATGGTTGAGGATATGCCTCTGTGGATTAAGTTCTTGCTGCACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGTTGAGGATATGCCTCTGTGGATTAAGTTCTTGCTGCACAGTA  550

seq1  TGAAGATCTTGATTCAAATACCCACAGGCCATGTAAAGGCAAGACATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCTTGATTCAAATACCCACAGGCCATGTAAAGGCAAGACATTAT  600

seq1  CAAACATCTTTAATCCCAGTGCTTCTATGGTGAGGTGGAAAGCAGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTTTAATCCCAGTGCTTCTATGGTGAGGTGGAAAGCAGAAACA  650

seq1  GAAGAATACATAGAAATTTAGAAATGAAGTATCCTGCTATGCACACCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATACATAGAAATTTAGAAATGAAGTATCCTGCTATGCACACCTAT  700

seq1  AAAACTTGAGAAAGAAACTGGGTTTTCAAAAAAGCTAGAACCAAAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGAGAAAGAAACTGGGTTTTCAAAAAAGCTAGAACCAAAGCCTG  750

seq1  TCACCCAAGACTTTCCTCTAACCTTCACATATGTGAAATACTTACATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAGACTTTCCTCTAACCTTCACATATGTGAAATACTTACATACC  800

seq1  TGCAGTTGCAGTTCCACAAATCTAGGCACACATGTGTACACACTCATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGCAGTTCCACAAATCTAGGCACACATGTGTACACACTCATGCA  850

seq1  TGTCATGTACACATACAGAGATATATAAACATACCAAAAATGAGAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTACACATACAGAGATATATAAACATACCAAAAATGAGAAAAAC  900

seq1  AATTAAGAACATAATGGAAAA-TCCAG-AAAACAGTTTTAAAATACAAAA  948
      ||||||||||||||||||||| ||||| |||||||||||||||||| |||
seq2  AATTAAGAACATAATGGAAAATTCCAGAAAAACAGTTTTAAAATAC-AAA  949

seq1  ATAGAA-GTAATAAAAATTGAAAAA-TAAAAGCATCAATGAATGAAATGG  996
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAGAAGGTAATAAAAATTGAAAAATTAAAAGCATCAATGAATGAAATGG  999

seq1  -AAAGTAAAATAG-AGACTGTTAACAACATACTA-CACCAAAAGGAA-TT  1042
       |||||||||||| |||||||||||||||||||| ||||||| |||| ||
seq2  AAAAGTAAAATAGAAGACTGTTAACAACATACTACCACCAAAGGGAATTT  1049

seq1  TTTATGAGC-TCAAGAAATACCCA--TAAGTCAACGTTTAGGCAAAAATA  1089
      ||||||||| |||  |||||||||   ||||| ||| ||||  |||||||
seq2  TTTATGAGCTTCAGAAAATACCCAATAAAGTC-ACG-TTAGCAAAAAATA  1097

seq1  TCATTCTATG-AATTC-TAGAAGTTGAA-GAAAGGTGAAAGATAT-TGGA  1135
      ||  |||||| ||||| ||||||||||| |||| |||||||| || | | 
seq2  TCCATCTATGAAATTCTTAGAAGTTGAAGGAAACGTGAAAGAAATATTGC  1147

seq1  AATTTATTACAG-GAAATAACA-ACCAAAAAAAATCC-TTCAGA  1176
      || |||||||||  |||||||| ||||| |||||||| ||||||
seq2  AAGTTATTACAGCAAAATAACACACCAAGAAAAATCCTTTCAGA  1191


| Home | SequenceCutter | Blast | Download |