BAC Information

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BAC

Clone NameB6Ng01-318B01
Chromosome16 (Build37)
Map Location 88,280,558 - 88,423,390
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318B01.bB6Ng01-318B01.g
ACCGA108047GA108048
length8721,057
definitionB6Ng01-318B01.b B6Ng01-318B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,422,520 - 88,423,390)(88,280,558 - 88,281,592)
sequence
gaattctatccccaaggtgatgatgttaagtggtggatcttttgaggaag
ggtgaatatgatcaatgttcttagggaagagaactggggagactcacttg
ctctttttattggaggacatggcaaaaaagaaaaaataatgctttctttg
aaacagaggctagctcttacccgatatcaaatctgccagtgtcttgagtt
tagacctcccagtcttcagactctgggtaaaaaagtccacattgattata
agacatttggtctttggaattttattgctgtatcttgagtagactagatt
atccagtttgctaatactgattgggtcttggtggtattgctgtgcaagtg
tctactcaagctgcctttcccaccagcacttaagagaaccatcagagtga
ctattgatttaaaacaactgatgtccaagtttttagaggtggaatagaaa
actgaagttgaatatgagggataacattgttatttgtatctgaagatagt
aaaacctacctggaagggtgacactgtgcagccccaggacagtgtgtgat
ctggtagcaccatactgattcctgcttctaagtttaaaaaaaaaaaaagc
ctctatccagccaaatctacttgaatgtcttatttaacctgacattgatc
ttctgtaacactatttgtttattaatgaacaagttctttcaggggaagta
aatggtaactttacttcctggacacaaatatagaactcacattttggatc
atcagcgtttatccatacttaccagtgttatctctctcacattggtaatt
tcttatcctgctttgatattttaatatcgtttaggagaatagaaatagaa
ataaaatgggatggggggaggg
gaattcaatcccctccctctcattaccattggaaggtcgggggcaaggct
ggaggaagatggagcacagcctccgtttttaaggtgaggccatctgatgt
ccagtgagggatgagcgcagggacacaatgtagttagatgtcaacaccaa
gacagggatcaaactggaggaaactggtctcatgtacagcctgaaggaat
gtgtgatctttagagaactttaatctccatagggagaaagaagaaaagat
atttgtataaatatgcatttaaagttgacagtgagcaatttgatatgacc
ccagtggaattttgggctcttgtgcctagttaagtttaatgacagataaa
taatgccagttccacataattggcttagagactatcaatgtcaggcatag
catagctgtttgttttcctacagcagtgtctcaattcatcccaaaggcac
caaatgcagatgtgccctgatgggcctgctcactacaaccttcaagctga
tggacaggggagtgactttcctcaaagatgtcatgatgaaggcaagcaag
aaatcctttaaggctggaaggactctcattacagcagacttttcaggatg
cctatctgcatgcaaatgactgcttcaatcacctagaatctgagaaatgg
ctgctttatccaatcatgtttaaattggacaagagtaatgacaggaatca
atgtgaaagaaatattcccaatccacactcctaacaaaaagaaacaaatt
ttccctgtccgtattcactgtaagttctcaaataagtgcaaaagaaatac
aggcagctatcgagtgccgagagaaagagaaattggtcttctccggggga
agaacatactacctgattatttgataccaaacggtcagttattaaaaaca
taatgttaatatatactatacttatatatttatgaatatgtattatatgt
aaatataattatgtaaatgcataccttgtcaattatacaaaataaaaaca
tgaaatttgaaagaatcaatgaggggtcctattcggaagggtcttgagaa
ggagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88422520_88423390
seq2: B6Ng01-318B01.b_51_922 (reverse)

seq1  CCCTCCCCCC-TCCCATTTTATTTCTATTTCTATTCTCCTAAACGATCTT  49
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  CCCTCCCCCCATCCCATTTTATTTCTATTTCTATTCTCCTAAACGATATT  50

seq1  -AAATATCAAAGCAGGATAAGAAATTACCAATGTGAGAGAGATAACACTG  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAAAGCAGGATAAGAAATTACCAATGTGAGAGAGATAACACTG  100

seq1  GTAAGTTATGGATAAACGCTGATGATCCAAAATGTGAGTTCTATATTTGT  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAG-TATGGATAAACGCTGATGATCCAAAATGTGAGTTCTATATTTGT  149

seq1  GTCCAGGAAGTAAAGTTACCATTTACTTCCCCTGAAAGAACTTGTTCATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAAGTAAAGTTACCATTTACTTCCCCTGAAAGAACTTGTTCATT  199

seq1  AATAAACAAATAGTGTTACAGAAGATCAATGTCAGGTTAAATAAGACATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAATAGTGTTACAGAAGATCAATGTCAGGTTAAATAAGACATT  249

seq1  CAAGTAGATTTGGCTGGATAGAGGCTTTTTTTTTTTTTAAACTTAGAAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGATTTGGCTGGATAGAGGCTTTTTTTTTTTTTAAACTTAGAAGC  299

seq1  AGGAATCAGTATGGTGCTACCAGATCACACACTGTCCTGGGGCTGCACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGTATGGTGCTACCAGATCACACACTGTCCTGGGGCTGCACAG  349

seq1  TGTCACCCTTCCAGGTAGGTTTTACTATCTTCAGATACAAATAACAATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCTTCCAGGTAGGTTTTACTATCTTCAGATACAAATAACAATGT  399

seq1  TATCCCTCATATTCAACTTCAGTTTTCTATTCCACCTCTAAAAACTTGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCATATTCAACTTCAGTTTTCTATTCCACCTCTAAAAACTTGGA  449

seq1  CATCAGTTGTTTTAAATCAATAGTCACTCTGATGGTTCTCTTAAGTGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTGTTTTAAATCAATAGTCACTCTGATGGTTCTCTTAAGTGCTG  499

seq1  GTGGGAAAGGCAGCTTGAGTAGACACTTGCACAGCAATACCACCAAGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGGCAGCTTGAGTAGACACTTGCACAGCAATACCACCAAGACC  549

seq1  CAATCAGTATTAGCAAACTGGATAATCTAGTCTACTCAAGATACAGCAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTATTAGCAAACTGGATAATCTAGTCTACTCAAGATACAGCAAT  599

seq1  AAAATTCCAAAGACCAAATGTCTTATAATCAATGTGGACTTTTTTACCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAAAGACCAAATGTCTTATAATCAATGTGGACTTTTTTACCCA  649

seq1  GAGTCTGAAGACTGGGAGGTCTAAACTCAAGACACTGGCAGATTTGATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAAGACTGGGAGGTCTAAACTCAAGACACTGGCAGATTTGATAT  699

seq1  CGGGTAAGAGCTAGCCTCTGTTTCAAAGAAAGCATTATTTTTTCTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAAGAGCTAGCCTCTGTTTCAAAGAAAGCATTATTTTTTCTTTTTT  749

seq1  GCCATGTCCTCCAATAAAAAGAGCAAGTGAGTCTCCCCAGTTCTCTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCCTCCAATAAAAAGAGCAAGTGAGTCTCCCCAGTTCTCTTCCC  799

seq1  TAAGAACATTGATCATATTCACCCTTCCTCAAAAGATCCACCACTTAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATTGATCATATTCACCCTTCCTCAAAAGATCCACCACTTAACA  849

seq1  TCATCACCTTGGGGATAGAATTC  871
      |||||||||||||||||||||||
seq2  TCATCACCTTGGGGATAGAATTC  872

seq1: chr16_88280558_88281592
seq2: B6Ng01-318B01.g_70_1126

seq1  GAATTCAATCCCCTCCCTCTCATTACCATTGGAAGGTCGGGGGCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCCTCCCTCTCATTACCATTGGAAGGTCGGGGGCAAGGCT  50

seq1  GGAGGAAGATGGAGCACAGCCTCCGTTTTTAAGGTGAGGCCATCTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGATGGAGCACAGCCTCCGTTTTTAAGGTGAGGCCATCTGATGT  100

seq1  CCAGTGAGGGATGAGCGCAGGGACACAATGTAGTTAGATGTCAACACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGGGATGAGCGCAGGGACACAATGTAGTTAGATGTCAACACCAA  150

seq1  GACAGGGATCAAACTGGAGGAAACTGGTCTCATGTACAGCCTGAAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGATCAAACTGGAGGAAACTGGTCTCATGTACAGCCTGAAGGAAT  200

seq1  GTGTGATCTTTAGAGAACTTTAATCTCCATAGGGAGAAAGAAGAAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCTTTAGAGAACTTTAATCTCCATAGGGAGAAAGAAGAAAAGAT  250

seq1  ATTTGTATAAATATGCATTTAAAGTTGACAGTGAGCAATTTGATATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAAATATGCATTTAAAGTTGACAGTGAGCAATTTGATATGACC  300

seq1  CCAGTGGAATTTTGGGCTCTTGTGCCTAGTTAAGTTTAATGACAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAATTTTGGGCTCTTGTGCCTAGTTAAGTTTAATGACAGATAAA  350

seq1  TAATGCCAGTTCCACATAATTGGCTTAGAGACTATCAATGTCAGGCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGTTCCACATAATTGGCTTAGAGACTATCAATGTCAGGCATAG  400

seq1  CATAGCTGTTTGTTTTCCTACAGCAGTGTCTCAATTCATCCCAAAGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGTTTGTTTTCCTACAGCAGTGTCTCAATTCATCCCAAAGGCAC  450

seq1  CAAATGCAGATGTGCCCTGATGGGCCTGCTCACTACAACCTTCAAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGATGTGCCCTGATGGGCCTGCTCACTACAACCTTCAAGCTGA  500

seq1  TGGACAGGGGAGTGACTTTCCTCAAAGATGTCATGATGAAGGCAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGGGAGTGACTTTCCTCAAAGATGTCATGATGAAGGCAAGCAAG  550

seq1  AAATCC-TTAAGGCTGGAAGGACTCTCATTACAGCAGACTTTTCAGGATG  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTAAGGCTGGAAGGACTCTCATTACAGCAGACTTTTCAGGATG  600

seq1  CCTATCTGCATGCAAATGACTGCTTCAATCACCTAGAATCTGAGAAATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGCATGCAAATGACTGCTTCAATCACCTAGAATCTGAGAAATGG  650

seq1  CTGCTTTATCCAATCATGTTTAAATTGGACAAGAGTAATGACAGGAATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTATCCAATCATGTTTAAATTGGACAAGAGTAATGACAGGAATCA  700

seq1  ATGTGAAAGAAATATTCCCAATCCACACTCCTAACAAAAAG-AACAAATT  748
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTGAAAGAAATATTCCCAATCCACACTCCTAACAAAAAGAAACAAATT  750

seq1  TTCCCTGTCCGTATTCACTGTAAGTTCTC-AATAAGTGC-AAAGAAATAC  796
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TTCCCTGTCCGTATTCACTGTAAGTTCTCAAATAAGTGCAAAAGAAATAC  800

seq1  AGGCAGCTATCGAGTGCCGAGAGAAAGAGAAA-TGGTCTTCTCC-GGGGA  844
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AGGCAGCTATCGAGTGCCGAGAGAAAGAGAAATTGGTCTTCTCCGGGGGA  850

seq1  AGAACATACTACCTGATTATTTGATACCAAACGGTCAG-TATTAAAAACA  893
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAACATACTACCTGATTATTTGATACCAAACGGTCAGTTATTAAAAACA  900

seq1  T-ATG-TAATATAGACTATACTTATATATTTATGAATATGTA-TATATGT  940
      | ||| ||||||| |||||||||||||||||||||||||||| |||||||
seq2  TAATGTTAATATATACTATACTTATATATTTATGAATATGTATTATATGT  950

seq1  AAATAT-ATTATGTATATGCATA-CATGT-AAGTA-ACAAAA-GAGAACA  985
      |||||| |||||||| ||||||| | ||| || || ||||||  | ||||
seq2  AAATATAATTATGTAAATGCATACCTTGTCAATTATACAAAATAAAAACA  1000

seq1  TG-AATTTGAAAG-ATCAATGAGGGGT-CTA-TCGGAGGG---TTTAGAA  1028
      || |||||||||| ||||||||||||| ||| ||||| ||   || ||||
seq2  TGAAATTTGAAAGAATCAATGAGGGGTCCTATTCGGAAGGGTCTTGAGAA  1050

seq1  GGAGTAA  1035
      |||||||
seq2  GGAGTAA  1057