BAC Information

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BAC

Clone NameB6Ng01-319D04
Chromosome16 (Build37)
Map Location 28,240,353 - 28,308,114
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319D04.bB6Ng01-319D04.g
ACCGA108891GA108892
length4301,118
definitionB6Ng01-319D04.b B6Ng01-319D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,240,353 - 28,240,788)(28,306,973 - 28,308,114)
sequence
tgtagtttgatagataaccatgatgtaaataaaaaaaatccccacatagg
agtgctgaattttagaagcagaatttatatccctgaccacatttaatcct
tgatataattctgtgataagcagcagaactttctgttcccatggaaacag
atgatgaaattaaagctcagagtgacctgcccaaggtcagccaactccaa
attgtacaggcaaaacccaaatcctttcctttaagtctgtagaaaatctt
cactctttgtagttgaaatttagtcatgttgtaacctcactcactgattt
gtttctgtcttgaagaaaagcagggcaggcgggcaggcaggcaggcaagt
actcaagaaggaaagagggcaggaaagaagtcagacaggcagacaggaag
gaagggaaaggaaggagggagggagggagg

gaattctttattctcctgccaccatccccacagcactgggactacaggca
tgtttagtgttactgaaaattgttaaagcacaaatactcagctttatcac
cctgttatttaacagatccgttttcttattctaaggatgtatttttctta
taagaatgagaaaaagaaacatatattaggctctaaatacttttctaaag
aaaggtctaaactctgcatttagtactgctaacctcattggaaagaaaaa
ctctgaaagcttccatggcgagtattatgaaaggaatggagtatatgtga
gaaaggtttatattttatgtaacattattggggcagcactctatgcccca
ctgataccccaacttgacaccattaacaacatctgggcccaatgttcata
tatacttgaggacccttatggactgagccgcagataagtcagataacttg
gaagcagatgtaagtagaagccaggcttttcttgtctctgcttccctctc
taaccaagattacaaggtcagagtttcttagttaatattcattgaattag
gcttttttccccctactttgctattttttagctaataaatagctaaaaac
ttctcaatagcttctttcacgtggcttaacaggtcattcactgtaaagtg
cataagcagttagtaaacatgacgttttctttgctttgctgttatttatt
cttgctatgtcttactacacacacttcatagcgagacacttgcctctgag
ttctccattataaactcagcaaatgcccacagtgaatatatgatgttatt
gaccaggagcttttatattggagaattttttttttttttttttttttttt
ttaccttgcccctgccttgccaggtgagaattgtaaaggcaagatttatc
ctgcatttcagtgactcactggacacaggaatgatccacattcattttac
ctgtcttttatttttttttcagcttatctttttaagagtatatagtgtcc
acagaagtataaggatgtgtactgagcattctatttgggtctatgtctgc
aaggtctctcagctgtatatatctgcctgtgggtatcatcatgaggatgc
tagtacgcatgtcattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28240353_28240788
seq2: B6Ng01-319D04.b_49_484

seq1  GAATTCTGTAGTTTGATAGATAACCATGATGTAAATAAAAAAAATCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTTTGATAGATAACCATGATGTAAATAAAAAAAATCCCCA  50

seq1  CATAGGAGTGCTGAATTTTAGAAGCAGAATTTATATCCCTGACCACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGTGCTGAATTTTAGAAGCAGAATTTATATCCCTGACCACATTT  100

seq1  AATCCTTGATATAATTCTGTGATAAGCAGCAGAACTTTCTGTTCCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGATATAATTCTGTGATAAGCAGCAGAACTTTCTGTTCCCATGG  150

seq1  AAACAGATGATGAAATTAAAGCTCAGAGTGACCTGCCCAAGGTCAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGATGAAATTAAAGCTCAGAGTGACCTGCCCAAGGTCAGCCAA  200

seq1  CTCCAAATTGTACAGGCAAAACCCAAATCCTTTCCTTTAAGTCTGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATTGTACAGGCAAAACCCAAATCCTTTCCTTTAAGTCTGTAGAA  250

seq1  AATCTTCACTCTTTGTAGTTGAAATTTAGTCATGTTGTAACCTCACTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCACTCTTTGTAGTTGAAATTTAGTCATGTTGTAACCTCACTCAC  300

seq1  TGATTTGTTTCTGTCTTGAAGAAAAGCAGGGCAGGCGGGCAGGCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTTCTGTCTTGAAGAAAAGCAGGGCAGGCGGGCAGGCAGGCAG  350

seq1  GCAAGTACTCAAGAAGGAAAGAGGGCAGGAAAGAAGTCAGACAGGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACTCAAGAAGGAAAGAGGGCAGGAAAGAAGTCAGACAGGCAGAC  400

seq1  AGGAAGGAAGGGAAAGGAAGGAGGGAGGGAGGGAGG  436
      ||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGGAAAGGAAGGAGGGAGGGAGGGAGG  436


seq1: chr16_28306973_28308114
seq2: B6Ng01-319D04.g_67_1184 (reverse)

seq1  ACAATGACAAATGCCTGTCATCAGCATCCTCATGATTGATCACCATCAGC  50
      ||||||||  |||| |   |  ||||||||||||| |||| |||  ||| 
seq2  ACAATGAC--ATGCGT---ACTAGCATCCTCATGA-TGAT-ACCCACAGG  43

seq1  CAGATAATTATACAGGCTGAAGAAGACTCTTGCAGACATTAGACCCAAAA  100
      ||||||  |||||| |||||   |||| |||||||||| ||||||| |||
seq2  CAGATA--TATACA-GCTGA--GAGAC-CTTGCAGACA-TAGACCC-AAA  85

seq1  TAGATGCCTCAAGGTTAACACATCCTAATTACCTTCTGT-GACAACCTAT  149
      ||||   ||||  ||  ||||||||| ||   ||||||| ||||  ||||
seq2  TAGAATGCTCA--GT--ACACATCCTTAT--ACTTCTGTGGACA--CTAT  127

seq1  ATACTCTTTAAAAAGATAAGCCTGAAAAAAAAT-AAAGACAGGTAAAATG  198
      |||||| ||||||||||||||   ||||||||| ||||||||||||||||
seq2  ATACTC-TTAAAAAGATAAGCTGAAAAAAAAATAAAAGACAGGTAAAATG  176

seq1  AATGTGGATCATTTCCTGTGTCCAGTGAGTCACTGAAATTGCAGGATAAA  248
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  AATGTGGATCA-TTCCTGTGTCCAGTGAGTCACTGAAA-TGCAGGATAAA  224

seq1  TCTTGCCTTTAC-ATTCTCACCTGGCAAGGCA-GAGCAAGGTAAAAAAAA  296
      |||||||||||| ||||||||||||||||||| | |||||||  ||||||
seq2  TCTTGCCTTTACAATTCTCACCTGGCAAGGCAGGGGCAAGGT--AAAAAA  272

seq1  AAAAAAAAAAAAAAAAAAAAATTCTCCAATATAAAAGCTCCTGGTCAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAATTCTCCAATATAAAAGCTCCTGGTCAATA  322

seq1  ACATCATATATTCACTGTGGGCATTTGCTGAGTTTATAATGGAGAACTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATATATTCACTGTGGGCATTTGCTGAGTTTATAATGGAGAACTCA  372

seq1  GAGGCAAGTGTCTCGCTATGAAGTGTGTGTAGTAAGACATAGCAAGAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGTGTCTCGCTATGAAGTGTGTGTAGTAAGACATAGCAAGAATA  422

seq1  AATAACAGCAAAGCAAAGAAAACGTCATGTTTACTAACTGCTTATGCACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCAAAGCAAAGAAAACGTCATGTTTACTAACTGCTTATGCACT  472

seq1  TTACAGTGAATGACCTGTTAAGCCACGTGAAAGAAGCTATTGAGAAGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGAATGACCTGTTAAGCCACGTGAAAGAAGCTATTGAGAAGTTT  522

seq1  TTAGCTATTTATTAGCTAAAAAATAGCAAAGTAGGGGGAAAAAAGCCTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATTTATTAGCTAAAAAATAGCAAAGTAGGGGGAAAAAAGCCTAA  572

seq1  TTCAATGAATATTAACTAAGAAACTCTGACCTTGTAATCTTGGTTAGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAATATTAACTAAGAAACTCTGACCTTGTAATCTTGGTTAGAGA  622

seq1  GGGAAGCAGAGACAAGAAAAGCCTGGCTTCTACTTACATCTGCTTCCAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGAGACAAGAAAAGCCTGGCTTCTACTTACATCTGCTTCCAAG  672

seq1  TTATCTGACTTATCTGCGGCTCAGTCCATAAGGGTCCTCAAGTATATATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGACTTATCTGCGGCTCAGTCCATAAGGGTCCTCAAGTATATATG  722

seq1  AACATTGGGCCCAGATGTTGTTAATGGTGTCAAGTTGGGGTATCAGTGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGGCCCAGATGTTGTTAATGGTGTCAAGTTGGGGTATCAGTGGG  772

seq1  GCATAGAGTGCTGCCCCAATAATGTTACATAAAATATAAACCTTTCTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGTGCTGCCCCAATAATGTTACATAAAATATAAACCTTTCTCAC  822

seq1  ATATACTCCATTCCTTTCATAATACTCGCCATGGAAGCTTTCAGAGTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCCATTCCTTTCATAATACTCGCCATGGAAGCTTTCAGAGTTTT  872

seq1  TCTTTCCAATGAGGTTAGCAGTACTAAATGCAGAGTTTAGACCTTTCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAATGAGGTTAGCAGTACTAAATGCAGAGTTTAGACCTTTCTTT  922

seq1  AGAAAAGTATTTAGAGCCTAATATATGTTTCTTTTTCTCATTCTTATAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTATTTAGAGCCTAATATATGTTTCTTTTTCTCATTCTTATAAG  972

seq1  AAAAATACATCCTTAGAATAAGAAAACGGATCTGTTAAATAACAGGGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACATCCTTAGAATAAGAAAACGGATCTGTTAAATAACAGGGTGA  1022

seq1  TAAAGCTGAGTATTTGTGCTTTAACAATTTTCAGTAACACTAAACATGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGAGTATTTGTGCTTTAACAATTTTCAGTAACACTAAACATGCC  1072

seq1  TGTAGTCCCAGTGCTGTGGGGATGGTGGCAGGAGAATAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCCAGTGCTGTGGGGATGGTGGCAGGAGAATAAAGAATTC  1118


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