BAC Information

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BAC

Clone NameB6Ng01-319D20
Chromosome16 (Build37)
Map Location 73,829,443 - 73,964,107
singlet/doubletdoublet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319D20.bB6Ng01-319D20.g
ACCGA108922GA108923
length1,0721,141
definitionB6Ng01-319D20.b B6Ng01-319D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,963,020 - 73,964,107)(73,829,443 - 73,830,599)
sequence
gaattctttaagccgtagtaaaaattcatatactttctttatttttccac
aactgccttgaaatgaggtcatttcatttatttttcactaaattttacac
tttgacagtggaatggctggcttctagctcctcagcatatgtcgactaag
ctgtggtatggggcattgattagagaagcagctataggaggttatgttca
aatcatacattgataaagcaaggcacaccaggaaaatgatttgacgttct
ttttgttatgactgctaaaacctaaaagccacttcgttctgtaactgaag
ggacattaaaacctctgaaaagagcagcagtagacacagattcttcaaac
cctgtgcatgcccaagttgaaacaagtatcagcttagaggcagaactgtg
cacacaatcccaccccaaactgtggagttcttgataattgctagcagctg
aaaaagaaagggttattaaaatgagtgtatatagccattgataagttgac
cactcttcagtagaaggccatacatccaagaatatttggacagtacaaac
atgtcttttagaaggatttttttctttttcttttccttttcctttttttt
tttttttacaaaaatgtgcatcgtgttgggtgggaagcgaagcaaggaga
atccaggaaggtttggaggagcagctaatattatccaaacccactgtatg
acactttcaaagaactaataacactctgaaaaatacttctctttaaaaaa
acaaaatgaacaaataaaacttagaaaactttgggatgttttgagagtgg
ggagggaaggcagcaaacacaaggatgtgcaacagtgggtactctcctca
caccactcttagcacaatttagcatctgtcagtgagctgggatttgccaa
gaggatgtgctgggtggccagtagtctgtggcctcacctctcatacaggg
taacatctcacactgtgctttgtgtcttcaatgtaggtctagactctaag
tctgttttcaagcatcaaggacaggcagttttcaactggactgtcaccag
ctcagagtgaagaagaacatct

gaattctctttcactattgacttcgcttgttcattggcttaatgtctcca
tgagtgggaagaatcacacactggaagcaaaacaaaaatcgcagctagca
ttttcgcttcctcatgaggttgcatctaaggaatgctgggaaaatccgga
aacgctgctaggaaacataatccttgaggattcttcattctccctgggtc
ttaacaataaggggattgagaaatggaatcttctaatgacatacaagact
ttcaaaggacaggaaaggagaccaatttgctcaaaatcaactggaaggga
tgtcagggagagaagccgtggacctaggatgacattctctcagctctgca
gatgctctctgtcagccacagaggcttaacatgaaaaggcccatgattct
gtaagggctctggcggtggtgaagccagacacattaggtctcacagagtc
ttctgtaaattgcaaccacttagtcatgagctctctctgacgctgatctt
agggctttggtgtccctaattttattgcacctcgactgcggtagaaagag
aaaaaaaaaaagcctgtgtattacttttaagtcttacttgaacaaacaaa
ggcatttttctccttcaaaatggtattctaagtacgttctgaactgggcc
tgacacttaggtaatccttagaagaccaccgggcctatcataaaggaatc
ttgctttatcataaggagatttctttttttcttttgccagagggaagcag
tttggccacttagcttcaaagctgacttgcttacactccactagttctaa
ttcttagtatattgtagcctttggcaaaatagcattggcaagaaataagg
aaaggaaatgaagaacaaaaatcatgagaggtaaggaaaacagccttttg
aactgtcattatattttttctcagctaaaattataaccctttatctaact
gttctcaatcagtttctattcgctagttatagctgaaaaaaaaaagctca
tcacataacactggctcttatacatgtgtagcttttttttctatcttcaa
tatcaatacataagtggagcaggtgacaagtgaggcctttatttgttgtc
gttagtaaagcctggaactgtattcgaatcttgtcgatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73963020_73964107
seq2: B6Ng01-319D20.b_46_1117 (reverse)

seq1  AGATGTTC-TCTTCACTCTTTGAGGCCTGGGTGACAGCTCAGTTGGAAAA  49
      |||||||| |||||||||  ||||  || ||||||||  ||||| |||||
seq2  AGATGTTCTTCTTCACTC--TGAG--CT-GGTGACAGTCCAGTT-GAAAA  44

seq1  CTG-CTGTCCTTGAATGCTTGAAAAACAGACTTAGAGTCTAGAACCTACA  98
      ||| ||||||||| ||||||| |||||||||||||||||||| |||||||
seq2  CTGCCTGTCCTTG-ATGCTTG-AAAACAGACTTAGAGTCTAG-ACCTACA  91

seq1  TTGAAAGAACAACAAAAGCACAGGTGTGAGGATGTTACCCTGTATGGAGG  148
      |||||   ||    |||||||| |||||| ||||||||||||||||   |
seq2  TTGAAGACAC----AAAGCACA-GTGTGA-GATGTTACCCTGTATG--AG  133

seq1  AGGTGAGGCCACAGACTACTGGCCACCCAGCACATCCTCTTTGGCAAATC  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGTGAGGCCACAGACTACTGGCCACCCAGCACATCCTC-TTGGCAAATC  182

seq1  CCAGCTCACTGACAGATGCTAAATTGTGCTAAGAGTGGTGTGAGGAGAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCACTGACAGATGCTAAATTGTGCTAAGAGTGGTGTGAGGAGAGT  232

seq1  ACCCACTGTTGCACATCCTTGTGTTTGCTGCCTTCCCTCCCCACTCTCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTTGCACATCCTTGTGTTTGCTGCCTTCCCTCCCCACTCTCAA  282

seq1  AACATCCCAAAGTTTTCTAAGTTTTATTTGTTCATTTTGTTTTTTTAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCAAAGTTTTCTAAGTTTTATTTGTTCATTTTGTTTTTTTAAAG  332

seq1  AGAAGTATTTTTCAGAGTGTTATTAGTTCTTTGAAAGTGTCATACAGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTTTTCAGAGTGTTATTAGTTCTTTGAAAGTGTCATACAGTGG  382

seq1  GTTTGGATAATATTAGCTGCTCCTCCAAACCTTCCTGGATTCTCCTTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATAATATTAGCTGCTCCTCCAAACCTTCCTGGATTCTCCTTGCT  432

seq1  TCGCTTCCCACCCAACACGATGCACATTTTTGTAAAAAAAAAAAAAAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCCCACCCAACACGATGCACATTTTTGTAAAAAAAAAAAAAAAGG  482

seq1  AAAAGGAAAAGAAAAAGAAAAAAATCCTTCTAAAAGACATGTTTGTACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAGAAAAAGAAAAAAATCCTTCTAAAAGACATGTTTGTACTG  532

seq1  TCCAAATATTCTTGGATGTATGGCCTTCTACTGAAGAGTGGTCAACTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATTCTTGGATGTATGGCCTTCTACTGAAGAGTGGTCAACTTAT  582

seq1  CAATGGCTATATACACTCATTTTAATAACCCTTTCTTTTTCAGCTGCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTATATACACTCATTTTAATAACCCTTTCTTTTTCAGCTGCTAG  632

seq1  CAATTATCAAGAACTCCACAGTTTGGGGTGGGATTGTGTGCACAGTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCAAGAACTCCACAGTTTGGGGTGGGATTGTGTGCACAGTTCTG  682

seq1  CCTCTAAGCTGATACTTGTTTCAACTTGGGCATGCACAGGGTTTGAAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGCTGATACTTGTTTCAACTTGGGCATGCACAGGGTTTGAAGAA  732

seq1  TCTGTGTCTACTGCTGCTCTTTTCAGAGGTTTTAATGTCCCTTCAGTTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTACTGCTGCTCTTTTCAGAGGTTTTAATGTCCCTTCAGTTAC  782

seq1  AGAACGAAGTGGCTTTTAGGTTTTAGCAGTCATAACAAAAAGAACGTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGAAGTGGCTTTTAGGTTTTAGCAGTCATAACAAAAAGAACGTCAA  832

seq1  ATCATTTTCCTGGTGTGCCTTGCTTTATCAATGTATGATTTGAACATAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCCTGGTGTGCCTTGCTTTATCAATGTATGATTTGAACATAAC  882

seq1  CTCCTATAGCTGCTTCTCTAATCAATGCCCCATACCACAGCTTAGTCGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAGCTGCTTCTCTAATCAATGCCCCATACCACAGCTTAGTCGAC  932

seq1  ATATGCTGAGGAGCTAGAAGCCAGCCATTCCACTGTCAAAGTGTAAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGAGGAGCTAGAAGCCAGCCATTCCACTGTCAAAGTGTAAAATT  982

seq1  TAGTGAAAAATAAATGAAATGACCTCATTTCAAGGCAGTTGTGGAAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAAATAAATGAAATGACCTCATTTCAAGGCAGTTGTGGAAAAAT  1032

seq1  AAAGAAAGTATATGAATTTTTACTACGGCTTAAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTATATGAATTTTTACTACGGCTTAAAGAATTC  1072


seq1: chr16_73829443_73830599
seq2: B6Ng01-319D20.g_64_1204

seq1  GAATTCTCTTTCACTATTGACTTCGCTTGTTCATTGGCTTAATGTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCACTATTGACTTCGCTTGTTCATTGGCTTAATGTCTCCA  50

seq1  TGAGTGGGAAGAATCACACACTGGAAGCAAAACAAAAATCGCAGCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGAAGAATCACACACTGGAAGCAAAACAAAAATCGCAGCTAGCA  100

seq1  TTTTCGCTTCCTCATGAGGTTGCATCTAAGGAATGCTGGGAAAATCCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCTTCCTCATGAGGTTGCATCTAAGGAATGCTGGGAAAATCCGGA  150

seq1  AACGCTGCTAGGAAACATAATCCTTGAGGATTCTTCATTCTCCCTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGCTAGGAAACATAATCCTTGAGGATTCTTCATTCTCCCTGGGTC  200

seq1  TTAACAATAAGGGGATTGAGAAATGGAATCTTCTAATGACATACAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATAAGGGGATTGAGAAATGGAATCTTCTAATGACATACAAGACT  250

seq1  TTCAAAGGACAGGAAAGGAGACCAATTTGCTCAAAATCAACTGGAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGACAGGAAAGGAGACCAATTTGCTCAAAATCAACTGGAAGGGA  300

seq1  TGTCAGGGAGAGAAGCCGTGGACCTAGGATGACATTCTCTCAGCTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGAGAGAAGCCGTGGACCTAGGATGACATTCTCTCAGCTCTGCA  350

seq1  GATGCTCTCTGTCAGCCACAGAGGCTTAACATGAAAAGGCCCATGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTCTGTCAGCCACAGAGGCTTAACATGAAAAGGCCCATGATTCT  400

seq1  GTAAGGGCTCTGGCGGTGGTGAAGCCAGACACATTAGGTCTCACAGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCTCTGGCGGTGGTGAAGCCAGACACATTAGGTCTCACAGAGTC  450

seq1  TTCTGTAAATTGCAACCACTTAGTCATGAGCTCTCTCTGACGCTGATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAATTGCAACCACTTAGTCATGAGCTCTCTCTGACGCTGATCTT  500

seq1  AGGGCTTTGGTGTCCCTAATTTTATTGCACCTCGACTGCGGTAGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGGTGTCCCTAATTTTATTGCACCTCGACTGCGGTAGAAAGAG  550

seq1  AAAAAAAAAAAGCCTGTGTATTACTTTTAAGTCTTACTTGAACAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCCTGTGTATTACTTTTAAGTCTTACTTGAACAAACAAA  600

seq1  GGCATTTTTCTCCTTCAAAATGGTATTCTAAGTACGTTCTGAACTGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTCTCCTTCAAAATGGTATTCTAAGTACGTTCTGAACTGGGCC  650

seq1  TGACACTTAGGTAATCCTTAGAAGACCACCGGGCCTATCATAAAGGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTAGGTAATCCTTAGAAGACCACCGGGCCTATCATAAAGGAATC  700

seq1  TTGCTTTATCATAAGGAGATTTCTTTTTTTCTTTTGCCAGAGGGAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATCATAAGGAGATTTCTTTTTTTCTTTTGCCAGAGGGAAGCAG  750

seq1  TTTGGCCACTTAGCTTCAAAGCTGACTTGCTTACACTCCACTAGTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCACTTAGCTTCAAAGCTGACTTGCTTACACTCCACTAGTTCTAA  800

seq1  TTCTTAGTATATTGTAGCCTTTGGCAAAATAGCATTGGCAAGAAATAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTATATTGTAGCCTTTGGCAAAATAGCATTGGCAAGAAATAAGG  850

seq1  AAAGGAAATGAAGAACAAAAATCATGAGAGGTAAGGAAAACAGCCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGAAGAACAAAAATCATGAGAGGTAAGGAAAACAGCCTTTTG  900

seq1  AACTGTCATTATATTTTTTCTCAGGCTAAAATTATAA-CCTTTATCTAAC  949
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  AACTGTCATTATATTTTTTCTCA-GCTAAAATTATAACCCTTTATCTAAC  949

seq1  TGTTCTCCAATCAGTTTCTATTCGGCTAGTTAATAGCTTGAAAAAAAAAG  999
      |||||| |||||||||||||||| ||||||| ||||||  ||||||||||
seq2  TGTTCT-CAATCAGTTTCTATTC-GCTAGTT-ATAGCTGAAAAAAAAAAG  996

seq1  CTCATCACCATAAAACACTGGCTTCTTATTACATGTGTAAGCTTTTTTTT  1049
      ||||||||   | ||||||||| ||||| ||||||||| |||||||||||
seq2  CTCATCAC---ATAACACTGGC-TCTTA-TACATGTGT-AGCTTTTTTTT  1040

seq1  TCCTATCTTCAATATTCAATACATAAAGTGAGCAAGTTGACAAGTGAGG-  1098
        |||||||||||| |||||||||||   |||| || |||||||||||| 
seq2  --CTATCTTCAATA-TCAATACATAAGTGGAGC-AGGTGACAAGTGAGGC  1086

seq1  CTTTATTTGTTGTCGTAAGT-AAGGCTGG-ACTGTATTTTCCCGGGATCT  1146
      |||||||||||||||| ||| ||| |||| ||||||||      | ||||
seq2  CTTTATTTGTTGTCGTTAGTAAAGCCTGGAACTGTATT-----CGAATCT  1131

seq1  TGTCAGATCAT  1157
      |||| ||||||
seq2  TGTC-GATCAT  1141


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