BAC Information

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BAC

Clone NameB6Ng01-320D17
Chromosome16 (Build37)
Map Location 36,369,723 - 36,510,063
singlet/doubletdoublet
Overlap geneLOC639105, Stfa2, Stfa3, Casr
Upstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530
Downstream geneEG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320D17.bB6Ng01-320D17.g
ACCGA109654GA109655
length1,174768
definitionB6Ng01-320D17.b B6Ng01-320D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,369,723 - 36,370,896)(36,509,296 - 36,510,063)
sequence
gaattcataatcttcttgaatatgcctctcaaattctgggattattagca
tgtgactctatgcctagtacttacgtctgccaattttaaatggtttgttt
ttgttctttgctgatgtccagactcagtaaatggcagtttaagtttgggg
atgtagctcagctgtacatttcatcgtgaagtttgctcaaggtactagtt
tcaatccttagtttgcccaagaaaaaatattccttgccatggtggatcat
agaaccctacctgatcccttgaagacaaccataaagcctagaaacccttt
tcaaacttcccctgcctgcccttccatgctgatgattgtgagcagaagtt
taaccagccttgcctggtagtaggttataaaaatcttcattctaggaggg
gttctgactaataccatagagatgggccttctcacagatagaccaaaaat
ctgagcagaccagccttgctggttctctttagccagtctttcaccagtag
gccatgaacctccctgtccaatcacatctacagttaactgtccatttttg
atcaaataaaaatatgaaaaatgggcagctgttcttgggtattcgggtca
tttccaaagtttcctgtgtcatttaaatctttgattacataaacctattc
cactttgtttgtgtgtgtttgctgccttttgtcataggagtgtgaaccct
agaaagaagaggatgagtcttaccctgttgaatgcccctacatgatattc
attaaatgcttcattttgcactgagtcaaaactttgaaatatgcttcttt
gacacacttttctttaaaataataattctggttttgttgttgttgttgtt
ttgttttgttttgtttgagacagtgttcactgagaagctctggctagtgt
ggaactcactatgtggatcaggttagccttgaactcacaaacctccatgt
acttatacctacatgcgctgagattaaaggcaagtacccattcagctgac
aaatttgaatgttcaacagctatttctcttgtagtgttccatacaataag
gacaacaagtgcagagagcccaagaacatgtttgctcttgatgttggcag
agcccaggagtgttgagtatggataagaatatgaaattcaattgggcaat
ggagaatgggaactatgcctacac
gaattcctacagaaagtccatcccaggaagtctgtccacaatggttttgc
caaagagttttgggaagaaacatttaattgccacctgcaagacggcgcaa
aaggacctttacccgtggacaccttcgtgagaagtcacgaggaaggcggc
aacaggttactcaatagctccactgccttccgacccctctgcacggggga
tgaaaacatcaatagtgtcgagaccccttacatggactacgaacatttac
ggatatcctacaacgtgtacttagccgtctactccattgcgcacgccctg
caagatatatacacctgcttacccggaagagggcttttcaccaacgggtc
ctgtgcagacatcaagaaggttgaggcctggcaggtaagtctctcactta
gctagtagttctctgtgtgttttaaagcagaattggggtggcgcagaaaa
gaaacattatttgcttttgtggctcggtgaccccaaagtacctgagagac
caacttcaaaaaggatttatttggactcatggtttccaaaggtctagcct
atggaacatttggtcccatgtgcttggggagggcatcatagccataacgg
tatgtggcataagagaactgttcacttcttggccaaccaggaagcagaga
cagagacaaaggcctactagccattcctcctcctcttctccttcattctc
ttcctcctcctgctgcttctcctcctcctccttcttctcctccccctcct
ccttccttcctctccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36369723_36370896
seq2: B6Ng01-320D17.b_48_1221

seq1  GAATTCATAATCTTCTTGAATATGCCTCTCAAATTCTGGGATTATTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCTTCTTGAATATGCCTCTCAAATTCTGGGATTATTAGCA  50

seq1  TGTGACTCTATGCCTAGTACTTACGTCTGCCAATTTTAAATGGTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTATGCCTAGTACTTACGTCTGCCAATTTTAAATGGTTTGTTT  100

seq1  TTGTTCTTTGCTGATGTCCAGACTCAGTAAATGGCAGTTTAAGTTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTGCTGATGTCCAGACTCAGTAAATGGCAGTTTAAGTTTGGGG  150

seq1  ATGTAGCTCAGCTGTACATTTCATCGTGAAGTTTGCTCAAGGTACTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTCAGCTGTACATTTCATCGTGAAGTTTGCTCAAGGTACTAGTT  200

seq1  TCAATCCTTAGTTTGCCCAAGAAAAAATATTCCTTGCCATGGTGGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTTAGTTTGCCCAAGAAAAAATATTCCTTGCCATGGTGGATCAT  250

seq1  AGAACCCTACCTGATCCCTTGAAGACAACCATAAAGCCTAGAAACCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTACCTGATCCCTTGAAGACAACCATAAAGCCTAGAAACCCTTT  300

seq1  TCAAACTTCCCCTGCCTGCCCTTCCATGCTGATGATTGTGAGCAGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCCCCTGCCTGCCCTTCCATGCTGATGATTGTGAGCAGAAGTT  350

seq1  TAACCAGCCTTGCCTGGTAGTAGGTTATAAAAATCTTCATTCTAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCCTTGCCTGGTAGTAGGTTATAAAAATCTTCATTCTAGGAGGG  400

seq1  GTTCTGACTAATACCATAGAGATGGGCCTTCTCACAGATAGACCAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACTAATACCATAGAGATGGGCCTTCTCACAGATAGACCAAAAAT  450

seq1  CTGAGCAGACCAGCCTTGCTGGTTCTCTTTAGCCAGTCTTTCACCAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGACCAGCCTTGCTGGTTCTCTTTAGCCAGTCTTTCACCAGTAG  500

seq1  GCCATGAACCTCCCTGTCCAATCACATCTACAGTTAACTGTCCATTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAACCTCCCTGTCCAATCACATCTACAGTTAACTGTCCATTTTTG  550

seq1  ATCAAATAAAAATATGAAAAATGGGCAGCTGTTCTTGGGTATTCGGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAAAATATGAAAAATGGGCAGCTGTTCTTGGGTATTCGGGTCA  600

seq1  TTTCCAAAGTTTCCTGTGTCATTTAAATCTTTGATTACATAAACCTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGTTTCCTGTGTCATTTAAATCTTTGATTACATAAACCTATTC  650

seq1  CACTTTGTTTGTGTGTGTTTGCTGCCTTTTGTCATAGGAGTGTGAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTTTGTGTGTGTTTGCTGCCTTTTGTCATAGGAGTGTGAACCCT  700

seq1  AGAAAGAAGAGGATGAGTCTTACCCTGTTGAATGCCCCTACATGATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGAGGATGAGTCTTACCCTGTTGAATGCCCCTACATGATATTC  750

seq1  ATTAAATGCTTCATTTTGCACTGAGTCAAAACTTTGAAATATGCTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGCTTCATTTTGCACTGAGTCAAAACTTTGAAATATGCTTCTTT  800

seq1  GACACACTTTTCTTTAAAATAATAATTCTGGTTTTGTTGTTGTTGTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTTTTCTTTAAAATAATAATTCTGGTTTTGTTGTTGTTGTTGTT  850

seq1  TTGTTTTGTTTTGTTTTGAGACAGTGTTTCACTGAGAAGCTCTGGCTAGT  900
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TTGTTTTGTTTTG-TTTGAGACAGTG-TTCACTGAGAAGCTCTGGCTAGT  898

seq1  GTGGAACTCACTATGTGGATCAGGTTAGCCTTGAACTCACAAACCTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTCACTATGTGGATCAGGTTAGCCTTGAACTCACAAACCTCCAT  948

seq1  GTACTTATACCTACATGCGCTGAGATTAAAGGCAAGTACCCATTTCAGGC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GTACTTATACCTACATGCGCTGAGATTAAAGGCAAGTACCCA-TTCA-GC  996

seq1  TGACAAATTTGAATGTTCAACAGCTATTTCTC-TGTAGTTGTCCATACAA  1049
      |||||||||||||||||||||||||||||||| ||||||  |||||||||
seq2  TGACAAATTTGAATGTTCAACAGCTATTTCTCTTGTAGTGTTCCATACAA  1046

seq1  TAAAGACAACAAGTGCAGGAAGAG-CCAAG-ACATGTTTGCTCTTGATGT  1097
      ||| ||||||||||||||  |||| ||||| |||||||||||||||||||
seq2  TAAGGACAACAAGTGCAG--AGAGCCCAAGAACATGTTTGCTCTTGATGT  1094

seq1  TGGCAGAGCACAGGGAGGTGTTGAGTAT-GATAAG-ATATGAAAATCAAT  1145
      ||||||||| ||||   ||||||||||| |||||| |||||||| |||||
seq2  TGGCAGAGCCCAGG--AGTGTTGAGTATGGATAAGAATATGAAATTCAAT  1142

seq1  TGGG-AAT-GAGATGGGGGACTATGCC-ACAC  1174
      |||| ||| ||||  ||| |||||||| ||||
seq2  TGGGCAATGGAGAATGGGAACTATGCCTACAC  1174

seq1: chr16_36509296_36510063
seq2: B6Ng01-320D17.g_64_831 (reverse)

seq1  GGGGGAGAGGAAGGAAGGAGGAGGGGGAGGAGAAGAAGGAGGAGGAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAGGAAGGAAGGAGGAGGGGGAGGAGAAGAAGGAGGAGGAGGAG  50

seq1  AAGCAGCAGGAGGAGGAAGAGAATGAAGGAGAAGAGGAGGAGGAATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAGGAGGAGGAAGAGAATGAAGGAGAAGAGGAGGAGGAATGGCT  100

seq1  AGTAGGCCTTTGTCTCTGTCTCTGCTTCCTGGTTGGCCAAGAAGTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCCTTTGTCTCTGTCTCTGCTTCCTGGTTGGCCAAGAAGTGAACA  150

seq1  GTTCTCTTATGCCACATACCGTTATGGCTATGATGCCCTCCCCAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTATGCCACATACCGTTATGGCTATGATGCCCTCCCCAAGCACA  200

seq1  TGGGACCAAATGTTCCATAGGCTAGACCTTTGGAAACCATGAGTCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAAATGTTCCATAGGCTAGACCTTTGGAAACCATGAGTCCAAAT  250

seq1  AAATCCTTTTTGAAGTTGGTCTCTCAGGTACTTTGGGGTCACCGAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTTTGAAGTTGGTCTCTCAGGTACTTTGGGGTCACCGAGCCAC  300

seq1  AAAAGCAAATAATGTTTCTTTTCTGCGCCACCCCAATTCTGCTTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAATAATGTTTCTTTTCTGCGCCACCCCAATTCTGCTTTAAAAC  350

seq1  ACACAGAGAACTACTAGCTAAGTGAGAGACTTACCTGCCAGGCCTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAACTACTAGCTAAGTGAGAGACTTACCTGCCAGGCCTCAACC  400

seq1  TTCTTGATGTCTGCACAGGACCCGTTGGTGAAAAGCCCTCTTCCGGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATGTCTGCACAGGACCCGTTGGTGAAAAGCCCTCTTCCGGGTAA  450

seq1  GCAGGTGTATATATCTTGCAGGGCGTGCGCAATGGAGTAGACGGCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTATATATCTTGCAGGGCGTGCGCAATGGAGTAGACGGCTAAGT  500

seq1  ACACGTTGTAGGATATCCGTAAATGTTCGTAGTCCATGTAAGGGGTCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTGTAGGATATCCGTAAATGTTCGTAGTCCATGTAAGGGGTCTCG  550

seq1  ACACTATTGATGTTTTCATCCCCCGTGCAGAGGGGTCGGAAGGCAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTGATGTTTTCATCCCCCGTGCAGAGGGGTCGGAAGGCAGTGGA  600

seq1  GCTATTGAGTAACCTGTTGCCGCCTTCCTCGTGACTTCTCACGAAGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAGTAACCTGTTGCCGCCTTCCTCGTGACTTCTCACGAAGGTGT  650

seq1  CCACGGGTAAAGGTCCTTTTGCGCCGTCTTGCAGGTGGCAATTAAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGTAAAGGTCCTTTTGCGCCGTCTTGCAGGTGGCAATTAAATGTT  700

seq1  TCTTCCCAAAACTCTTTGGCAAAACCATTGTGGACAGACTTCCTGGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAAAACTCTTTGGCAAAACCATTGTGGACAGACTTCCTGGGATG  750

seq1  GACTTTCTGTAGGAATTC  768
      ||||||||||||||||||
seq2  GACTTTCTGTAGGAATTC  768