BAC Information

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BAC

Clone NameB6Ng01-321E21
Chromosome16 (Build37)
Map Location 67,053,495 - 67,165,356
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E21.bB6Ng01-321E21.g
ACCGA110450GA110451
length5001,179
definitionB6Ng01-321E21.b B6Ng01-321E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,164,852 - 67,165,356)(67,053,495 - 67,054,704)
sequence
agtagagttgttttagggattataaagaataataaagatggtttttactc
tatcttttctaatttgactttaaagaccctgatcatttgggataggttct
agacgcctatctcatggagggaagattgattcgatttgatgctagcctat
tcctcaactggatatatgaccagagtaaaagaactaaaaccaagatggtt
ttatgttagtgtttgcttaaacattctgggtcccatggttagactagtat
cttcaaatagaattttaaatatattgtgatatttcctgctaataaagttt
tctgtaagctaatatttgtgattacaaatttatagacacaaaggatttta
agtttaaaatggatgcttatttcgttattttgttgtgtgtcggtgtatgt
gggtttgtgttagtatatgtatatatctgtagaggttatgggttataaat
tgaccctggaaatggatgtgtgtgttactagactttaaaactcactgctt


gaattcagaagtgatggattgaattccccttgctttaaaatcatgatgga
tgacattaggaggatatataagcattgtagaatcttggcagaaattaatt
aacatctcagcaaaaaaaaaaatgatgctggcattgatctttgatgaggt
tgaactaaggagaaatattcaataaaccttttgaaagtataaatgatcag
gcattcacctgagcattttgtccaatgatatctataattgtttttaaaat
aatttttaaatattaaaattaatatttatattactgtctggtgtcagaaa
catccacagccacaaagatttcagaggattaaataatatagcatgcatga
aaaaagttcaaaatctacattgtctgttactgtgttaaaaaaaaatgaaa
ctactttaatgaagaaatcaaacaatctatgatgataaaattttaccata
ggaacaaacatggtttgatatgaggcttattatgatcaagccacaatatt
tcaagagagttgtctagacaacctctaaatatgaccttcactgtaaacat
tgtcatcagctcagcctattttcctgaataatcatgagttctcaatgaaa
tgtttcaagattataatcatgtaaacactatgtaaatttcatttatgaat
attatacaatgtttatcacctctccctcatgtgtgttgattaggagaggg
gcacaaaagaaaccaggacagccaaacaggaccaacaaaaccaaatatct
tagtttaagtttctaatttctttacatttaaatacaaatttttttttggg
gaaatatttcctaaatctgaatcttttcaaaactaaaactccaaagagaa
ataagaccaaaggaaactattaacataattttaataccataataatttta
aaggtcaattaagatgttaattaaatgtttaaaagtagctttcatgtaag
aagcctagtcacttttggttgtactgatgatccagagacacaccagaaaa
tatgtgaaacattccagcatgcatttaagcatgttgtgaaatttgatggc
tggagtcaggaacaacacaacaaacttcaaagtacaccactatgaaccca
gtagagaaaccggaacgttactaataattaacctgaatcgtctggcaatg
ggtttcagccgtccaaaaggtcccctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67164852_67165356
seq2: B6Ng01-321E21.b_44_549 (reverse)

seq1  AAGCAGTAAGTTTTAAAGTC-AGTGACACACACATCCATTTCCAGGTTAA  49
      ||||||| |||||||||||| ||| ||||||||||||||||||||| | |
seq2  AAGCAGTGAGTTTTAAAGTCTAGTAACACACACATCCATTTCCAGGGTCA  50

seq1  ATTTATAACCCATAACCTCTACACATATATACATATACTAACACAAACCC  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTATAACCCATAACCTCTACAGATATATACATATACTAACACAAACCC  100

seq1  ACATACACCGACACACAACAAAATAACGAAATAAGCATCCATTTTAAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACCGACACACAACAAAATAACGAAATAAGCATCCATTTTAAACT  150

seq1  TAAAATCCTTTGTGTCTATAAATTTGTAATCACAAATATTAGCTTACAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTTTGTGTCTATAAATTTGTAATCACAAATATTAGCTTACAGA  200

seq1  AAACTTTATTAGCAGGAAATATCACAATATATTTAAAATTCTATTTGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATTAGCAGGAAATATCACAATATATTTAAAATTCTATTTGAAG  250

seq1  ATACTAGTCTAACCATGGGACCCAGAATGTTTAAGCAAACACTAACATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTCTAACCATGGGACCCAGAATGTTTAAGCAAACACTAACATAA  300

seq1  AACCATCTTGGTTTTAGTTCTTTTACTCTGGTCATATATCCAGTTGAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTTGGTTTTAGTTCTTTTACTCTGGTCATATATCCAGTTGAGGA  350

seq1  ATAGGCTAGCATCAAATCGAATCAATCTTCCCTCCATGAGATAGGCGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTAGCATCAAATCGAATCAATCTTCCCTCCATGAGATAGGCGTCT  400

seq1  AGAACCTATCCCAAATGATCAGGGTCTTTAAAGTCAAATTAGAAAAGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTATCCCAAATGATCAGGGTCTTTAAAGTCAAATTAGAAAAGATA  450

seq1  GAGTAAAAACCATCTTTATTATTCTTTATAATCCCTAAAACAACTCTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAACCATCTTTATTATTCTTTATAATCCCTAAAACAACTCTACT  500

seq1  GAATTC  505
      ||||||
seq2  GAATTC  506


seq1: chr16_67053495_67054704
seq2: B6Ng01-321E21.g_68_1246

seq1  GAATTCAGAAGTGATGGATTGAATTCCCCTTGCTTTAAAATCATGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTGATGGATTGAATTCCCCTTGCTTTAAAATCATGATGGA  50

seq1  TGACATTAGGAGGATATATAAGCATTGTAGAATCTTGGCAGAAATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAGGAGGATATATAAGCATTGTAGAATCTTGGCAGAAATTAATT  100

seq1  AACATCTCAGCAAAAAAAAAAATGATGCTGGCATTGATCTTTGATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCAGCAAAAAAAAAAATGATGCTGGCATTGATCTTTGATGAGGT  150

seq1  TGAACTAAGGAGAAATATTCAATAAACCTTTTGAAAGTATAAATGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAGGAGAAATATTCAATAAACCTTTTGAAAGTATAAATGATCAG  200

seq1  GCATTCACCTGAGCATTTTGTCCAATGATATCTATAATTGTTTTTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACCTGAGCATTTTGTCCAATGATATCTATAATTGTTTTTAAAAT  250

seq1  AATTTTTAAATATTAAAATTAATATTTATATTACTGTCTGGTGTCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAATATTAAAATTAATATTTATATTACTGTCTGGTGTCAGAAA  300

seq1  CATCCACAGCCACAAAGATTTCAGAGGATTAAATAATATAGCATGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGCCACAAAGATTTCAGAGGATTAAATAATATAGCATGCATGA  350

seq1  AAAAAGTTCAAAATCTACATTGTCTGTTACTGTGTTAAAAAAAAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCAAAATCTACATTGTCTGTTACTGTGTTAAAAAAAAATGAAA  400

seq1  CTACTTTAATGAAGAAATCAAACAATCTATGATGATAAAATTTTACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAATGAAGAAATCAAACAATCTATGATGATAAAATTTTACCATA  450

seq1  GGAACAAACATGGTTTGATATGAGGCTTATTATGATCAAGCCACAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAACATGGTTTGATATGAGGCTTATTATGATCAAGCCACAATATT  500

seq1  TCAAGAGAGTTGTCTAGACAACCTCTAAATATGACCTTCACTGTAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGTTGTCTAGACAACCTCTAAATATGACCTTCACTGTAAACAT  550

seq1  TGTCATCAGCTCAGCCTATTTTCCTGAATAATCATGAGTTCTCAATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGCTCAGCCTATTTTCCTGAATAATCATGAGTTCTCAATGAAA  600

seq1  TGTTTCAAGATTATAATCATGTAAACACTATGTAAATTTCATTTATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAGATTATAATCATGTAAACACTATGTAAATTTCATTTATGAAT  650

seq1  ATTATACAATGTTTATCACCTCTCCCTCATGTGTGTTGATTAGGAGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAATGTTTATCACCTCTCCCTCATGTGTGTTGATTAGGAGAGGG  700

seq1  GCACAAAAGAAACCAGGACAGCCAAACAGGACCAACAAAACCAAATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAGAAACCAGGACAGCCAAACAGGACCAACAAAACCAAATATCT  750

seq1  TAGTTTAAGTTTCTAATTTCTTTACATTTAAATACAAA-TTTTTTTTGGG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGTTTAAGTTTCTAATTTCTTTACATTTAAATACAAATTTTTTTTTGGG  800

seq1  GAAATATTTCCTAAATCTGAATCTTTTCAAAACTAAAACTCCAAAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTCCTAAATCTGAATCTTTTCAAAACTAAAACTCCAAAGAGAA  850

seq1  ATAAGACCAAAGGAAACTATTAACATAATTTTAATACCATAATAATTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCAAAGGAAACTATTAACATAATTTTAATACCATAATAATTTTA  900

seq1  AAGGTCAATTAAGATGTTAATTAAATGTTTAAAAAGTAGCTTTCATGTAA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGTCAATTAAGATGTTAATTAAATGTTT-AAAAGTAGCTTTCATGTAA  949

seq1  GAAGCCTAGTCACTTTTGGTTGTACTGATGAATCCAGAAGAACACACCAG  999
      |||||||||||||||||||||||||||||| |||||||   |||||||||
seq2  GAAGCCTAGTCACTTTTGGTTGTACTGATG-ATCCAGA--GACACACCAG  996

seq1  AAAATATGTTGAAACAATTCCAAGCATGCATTTAAGCATGTTGTTGAAAA  1049
      |||||||| |||||| ||||| ||||||||||||||||||||||   |||
seq2  AAAATATG-TGAAAC-ATTCC-AGCATGCATTTAAGCATGTTGT--GAAA  1041

seq1  TTTGATTGCTGGAGGTTCAGGAAACAAACAAACAAACAAAAACTTTAAAA  1099
      |||||| |||||||  |||||||  | |||       | ||||||     
seq2  TTTGATGGCTGGAG--TCAGGAACAACACA-------ACAAACTT----C  1078

seq1  AAATAACAACACATAGTGACACCAAATTAGGAGGAAACACAGAGTGTACT  1149
      |||  ||| ||| || ||| ||| | |   ||| || |  |  || ||||
seq2  AAAGTACACCAC-TA-TGA-ACCCAGT--AGAGAAACCGGAACGT-TACT  1122

seq1  AATAAAATTATACTTGATCTGTTTGGGAATAGGTGTTCAGCCGGTCCAAA  1199
      |||  ||||| || |||   || ||| ||| ||| ||||||| |||||||
seq2  AAT--AATTA-ACCTGAATCGTCTGGCAATGGGT-TTCAGCC-GTCCAAA  1167

seq1  AGGT-CCCTGGC  1210
      |||| |||||||
seq2  AGGTCCCCTGGC  1179


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