BAC Information

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BAC

Clone NameB6Ng01-321I17
Chromosome16 (Build37)
Map Location 89,653,201 - 89,819,863
singlet/doubletdoublet
Overlap geneTiam1
Upstream geneEG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321I17.bB6Ng01-321I17.g
ACCGA110618GA110619
length9851,101
definitionB6Ng01-321I17.b B6Ng01-321I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,653,201 - 89,654,016)(89,818,746 - 89,819,863)
sequence
gaattctttacaagggcactcttcagatatgtgcaactacgaacttttct
tggtacatatgtgcagaaaaatagcacatatatgcagaagagcaacatat
acattcagaagaacagtacatgcatgcagaaggacagcaaacacatgcag
aacagcacatacatgcagaaaaacaatgcatacatgcagaaaaacaacac
atacatggagaagaacaacacatacatgcagaaggagagctcattcatgc
agaagggcagaacatacatgcagaacagaacatacatgcagaaggacagc
acacacattcaaaaggacacacacatccaaaaggacagcacacacatgca
gaaggacagaacatacatgtagaagaacagcacatacatgcagaaggaca
gcacacacatgcagaacagcacatacatgcagaaggacagaacatacatg
caaaaggacatcatatacatgcagaaggacagcacgcacatgcagaacag
cacatacatgaagaagaacagcacatacatgcagaaggaaaacaagcttt
cttaagtttcagtttcccctattgaaaatactttttcatacaacatggtc
tgattacactttccctccctactcctcctcccagtccctccccacctccc
atctcacccagatccacaccctttctgtcccttgttagaaaacaaacagg
cacctaaggaagacaaataaaataagataaaacaaagacaaattggaata
ggacaaaagaaagaaagaaacagaaaaaaggtaaagaaaaaagcataaga
aacacatatagagacagggagacacacataggaatcccataaaagaacat
aactggaagccatgaaatatacacaaaggacctacaaagtaaaagtaaat
taattttaagaagtattgtggatcaacattatgagacaaagaaccctcca
aaaatgctgttgactttatgctggccaccaactac
gaattcattcattttgaagtgtatgctgctgtaacctggaagagaatatt
aagcctcatcagaatgcacacacactcatcaagcagagagagccgtacct
agtaaataaatagaaactgggtggcgacgtggctcagcaggttaaggaac
ccgacccctaacttgaccacctgatttccatccctgggacccacatgata
gaagaggccgactgctgcaaattgtcttctaacctccacacatggaccgt
aacatgccctgcacccaatcacgcctgcccccaacagaataatgaaataa
attatttttcctccttgcttcgattttttaaaagacagggtcttactggc
ccgcatagagctaactatgttgacctgaccccactggcctcaaactcata
gagatcagccagtcttctgggattaaaggtgtgcgccaccatggcccgct
gtgttatcagtttttattctgctgggaaacgtgaggccggagaccccgtg
attgtcttcttcctatttttttattttcttttttgtttattattattatt
ttgctgtttccttccaaatgagctggatggagggtaaaagctgtggctgt
gctctgtcttttaaatgcggtttagccatgcctggccgtttggagctgag
caagtgggtaatggtgagcttgttctctggagatgattcaggaatgtcgc
actgatgggtggggttgtcacaaggcaggggaatgtagtcacctctccct
ttgtcactgcctccttcctctggtggcatggtgacagcctcaggtctcct
catccactgggtaacttactcccctttacaacttcttgaaaactcttgct
tgtggaatgaaatgctaattaacctaggtcagaggagcccagcgtcctgt
cctgtgttccaggctctctggtggctctggcttttctgagttttccagtt
agaaatgtattaggatattttttttctgctttttcattcactaccacgta
ccctttcacacatgtgtatccactggagtatcagttcgtaatagcattct
gtaatgctgcaggcgcgccagtgaagacctgtctgtgtggtgggggagcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89653201_89654016
seq2: B6Ng01-321I17.b_50_865

seq1  GAATTCTTTACAAGGGCACTCTTCAGATATGTGCAACTACGAACTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAAGGGCACTCTTCAGATATGTGCAACTACGAACTTTTCT  50

seq1  TGGTACATATGTGCAGAAAAATAGCACATATATGCAGAAGAGCAACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATATGTGCAGAAAAATAGCACATATATGCAGAAGAGCAACATAT  100

seq1  ACATTCAGAAGAACAGTACATGCATGCAGAAGGACAGCAAACACATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAAGAACAGTACATGCATGCAGAAGGACAGCAAACACATGCAG  150

seq1  AACAGCACATACATGCAGAAAAACAATGCATACATGCAGAAAAACAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACATACATGCAGAAAAACAATGCATACATGCAGAAAAACAACAC  200

seq1  ATACATGGAGAAGAACAACACATACATGCAGAAGGAGAGCTCATTCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGAGAAGAACAACACATACATGCAGAAGGAGAGCTCATTCATGC  250

seq1  AGAAGGGCAGAACATACATGCAGAACAGAACATACATGCAGAAGGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCAGAACATACATGCAGAACAGAACATACATGCAGAAGGACAGC  300

seq1  ACACACATTCAAAAGGACACACACATCCAAAAGGACAGCACACACATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTCAAAAGGACACACACATCCAAAAGGACAGCACACACATGCA  350

seq1  GAAGGACAGAACATACATGTAGAAGAACAGCACATACATGCAGAAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGAACATACATGTAGAAGAACAGCACATACATGCAGAAGGACA  400

seq1  GCACACACATGCAGAACAGCACATACATGCAGAAGGACAGAACATACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACATGCAGAACAGCACATACATGCAGAAGGACAGAACATACATG  450

seq1  CAAAAGGACATCATATACATGCAGAAGGACAGCACGCACATGCAGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGACATCATATACATGCAGAAGGACAGCACGCACATGCAGAACAG  500

seq1  CACATACATGAAGAAGAACAGCACATACATGCAGAAGGAAAACAAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGAAGAAGAACAGCACATACATGCAGAAGGAAAACAAGCTTT  550

seq1  CTTAAGTTTCAGTTTCCCCTATTGAAAATACTTTTTCATACAACATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTTCAGTTTCCCCTATTGAAAATACTTTTTCATACAACATGGTC  600

seq1  TGATTACACTTTCCCTCCCTACTCCTCCTCCCAGTCCCTCCCCACCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACACTTTCCCTCCCTACTCCTCCTCCCAGTCCCTCCCCACCTCCC  650

seq1  ATCTCACCCAGATCCACACCCTTTCTGTCCCTTGTTAGAAAACAAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCCAGATCCACACCCTTTCTGTCCCTTGTTAGAAAACAAACAGG  700

seq1  CACCTAAGGAAGACAAATAAAATAAGATAAAACAAAGACAAATTGGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAGGAAGACAAATAAAATAAGATAAAACAAAGACAAATTGGAATA  750

seq1  GGACAAAAGAAAGAAAGAAACAGAAAAAAGGTAAAGAAAAAAGCATAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAGAAAGAAAGAAACAGAAAAAAGGTAAAGAAAAAAGCATAAGA  800

seq1  AACACATATAGAGACA  816
      ||||||||||||||||
seq2  AACACATATAGAGACA  816

seq1: chr16_89818746_89819863
seq2: B6Ng01-321I17.g_67_1167 (reverse)

seq1  AGGCT-CCCCACCACACAGACCAGGTCTTTCAACTGGGCGCGCCCTGCAG  49
      ||||| |||||||||||||| ||||||||   ||| |||||| |||||||
seq2  AGGCTCCCCCACCACACAGA-CAGGTCTT--CACT-GGCGCG-CCTGCAG  45

seq1  CATTTTACAG-ATGCTTAATTACGAAAACTGATACTTCCCAGGTGATTAC  98
      ||  |||||| |||||  ||||||  ||||||||||  ||| |||  |||
seq2  CA--TTACAGAATGCT--ATTACG--AACTGATACT--CCA-GTGGATAC  86

seq1  AACATGTGTGAAAAGGGTACGTGGTAGTGAATGAAAAAGCCAGAAAAAAA  148
       ||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  -ACATGTGTG-AAAGGGTACGTGGTAGTGAATGAAAAAG-CAGAAAAAAA  133

seq1  ATTATTCTAATACATTTTCTAACTGGAAAACTCAGAAAAGCCAGAGCCAC  198
      | ||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  A-TATCCTAATACA-TTTCTAACTGGAAAACTCAGAAAAGCCAGAGCCAC  181

seq1  CAGAGAGCCTGGAACACAGGACAGGACGCTGGGCTCCTCTGACCTAGGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCTGGAACACAGGACAGGACGCTGGGCTCCTCTGACCTAGGTT  231

seq1  AATTAGCATTTCATTCCACAAGCAAGAGTTTTCAAGAAGTTGTAAAGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCATTTCATTCCACAAGCAAGAGTTTTCAAGAAGTTGTAAAGGGG  281

seq1  AGTAAGTTACCCAGTGGATGAGGAGACCTGAGGCTGTCACCATGCCACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTACCCAGTGGATGAGGAGACCTGAGGCTGTCACCATGCCACCA  331

seq1  GAGGAAGGAGGCAGTGACAAAGGGAGAGGTGACTACATTCCCCTGCCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGGCAGTGACAAAGGGAGAGGTGACTACATTCCCCTGCCTTG  381

seq1  TGACAACCCCACCCATCAGTGCGACATTCCTGAATCATCTCCAGAGAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCCCACCCATCAGTGCGACATTCCTGAATCATCTCCAGAGAACA  431

seq1  AGCTCACCATTACCCACTTGCTCAGCTCCAAACGGCCAGGCATGGCTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATTACCCACTTGCTCAGCTCCAAACGGCCAGGCATGGCTAAA  481

seq1  CCGCATTTAAAAGACAGAGCACAGCCACAGCTTTTACCCTCCATCCAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATTTAAAAGACAGAGCACAGCCACAGCTTTTACCCTCCATCCAGCT  531

seq1  CATTTGGAAGGAAACAGCAAAATAATAATAATAAACAAAAAAGAAAATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAAGGAAACAGCAAAATAATAATAATAAACAAAAAAGAAAATAA  581

seq1  AAAAATAGGAAGAAGACAATCACGGGGTCTCCGGCCTCACGTTTCCCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGAAGAAGACAATCACGGGGTCTCCGGCCTCACGTTTCCCAGC  631

seq1  AGAATAAAAACTGATAACACAGCGGGCCATGGTGGCGCACACCTTTAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAACTGATAACACAGCGGGCCATGGTGGCGCACACCTTTAATC  681

seq1  CCAGAAGACTGGCTGATCTCTATGAGTTTGAGGCCAGTGGGGTCAGGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACTGGCTGATCTCTATGAGTTTGAGGCCAGTGGGGTCAGGTCA  731

seq1  ACATAGTTAGCTCTATGCGGGCCAGTAAGACCCTGTCTTTTAAAAAATCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTAGCTCTATGCGGGCCAGTAAGACCCTGTCTTTTAAAAAATCG  781

seq1  AAGCAAGGAGGAAAAATAATTTATTTCATTATTCTGTTGGGGGCAGGCGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGAGGAAAAATAATTTATTTCATTATTCTGTTGGGGGCAGGCGT  831

seq1  GATTGGGTGCAGGGCATGTTACGGTCCATGTGTGGAGGTTAGAAGACAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGTGCAGGGCATGTTACGGTCCATGTGTGGAGGTTAGAAGACAAT  881

seq1  TTGCAGCAGTCGGCCTCTTCTATCATGTGGGTCCCAGGGATGGAAATCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGTCGGCCTCTTCTATCATGTGGGTCCCAGGGATGGAAATCAG  931

seq1  GTGGTCAAGTTAGGGGTCGGGTTCCTTAACCTGCTGAGCCACGTCGCCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAAGTTAGGGGTCGGGTTCCTTAACCTGCTGAGCCACGTCGCCAC  981

seq1  CCAGTTTCTATTTATTTACTAGGTACGGCTCTCTCTGCTTGATGAGTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTATTTATTTACTAGGTACGGCTCTCTCTGCTTGATGAGTGTG  1031

seq1  TGTGCATTCTGATGAGGCTTAATATTCTCTTCCAGGTTACAGCAGCATAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCTGATGAGGCTTAATATTCTCTTCCAGGTTACAGCAGCATAC  1081

seq1  ACTTCAAAATGAATGAATTC  1118
      ||||||||||||||||||||
seq2  ACTTCAAAATGAATGAATTC  1101