BAC Information

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BAC

Clone NameB6Ng01-322H04
Chromosome16 (Build37)
Map Location 19,606,449 - 19,607,636
singlet/doubletsinglet
Overlap geneOlfr170
Upstream geneGp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169
Downstream geneOlfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H04.bB6Ng01-322H04.g
ACCGA111286GA111287
length1,2071,184
definitionB6Ng01-322H04.b B6Ng01-322H04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgtgtgactaccaaggtagatatcaggaaggcctcttttgta
gactagttgtgttaataatgaactatgtaagttaaggattgaaagtaact
tttcaggaaaaacagtattattttagatatatgcaaaatttctgtctcca
tcattgtttttgtctttctgtctgtctgtctgtctgtctgtctgtctgtc
tctctctctcttacacacacacacacacacacacacacacacacacacac
acacacacacacactgatgtttaatcacagtcatttgaaagaagtactga
atgtttctaaaactaatcatggttagctcccttttttgtgttaaactcag
cacaaaatgacccacacatttcatgctgctgttaatcttccttactccct
ttcataactagagcccatttttccttattcaagatttaaagtgaagaaga
ctgtaaaagagcaggaaaatctgggtttcaactggaatatacagttaatt
aatgaatagttttacaatgcccaggttctagggagagtcgaaccctacag
aaacccaagtggagattacacaggatgtgcaattgtgaaaagtttattca
agtaatgagtgggcttgagtaaaacatatgaaagtaagtgcagttacaaa
atctgaaatataaaacagtcaattccaaactaaatattaaattttgttag
aacaaaaaaccatgcacttataacacatctactctgaagctctctatgag
gcacttgatggtgaatacaaattacatatcaacccacttcactatgtaaa
attataagtaagtcatagatttaacaactttttcacaaataacgaatgat
ctctttgcaggtaaaatagaaggaaatatgatggaatatgagaactacac
ttttaacgacttcatcctcttgggactgttctcttcttcaaaagacaagt
ttaacttttttctcagttattatttttcattttttattatgggctaataa
cagaaatgccctcatgatcctcctaatccacagggattctcgactccata
ccccaatgtatttttctgctcagtcatctctctttcaatggaattatctg
caacatttcaacattgttcctaaaatgaattgctgacttcctcctcaggc
agacagaaacttatttacctttgccaggcgtgtgcccttccagaaatttt
ccctctc
gaattcaaaatttcttctggattgatccactgcttcttactcaagttcag
tccaagaaaatgcaaaaagcaaagagttcctaacccaaaacatccaggaa
atatagaacaatgaaaagaccaaacataaggataataggtatagaagaga
gtgaagattcccaacttaaagggccagtaaatatcttcaacaaaattata
gaaaactttaacctgagaaaagagatgtccatacatatacaagaagccta
cagaactccagatagactggaccagaaaagaaggtccccccatcacataa
cagtcaaaacaccaaatgcacaaaataaagaaggaatattaaaagcagta
agggaaaaagaccaagtaacatataagggccgacctattaaatcacacca
gagttctcaacagagactatgaaagttaggagatcctaggcagatcacat
acagactctaagagaacaaaaatgctagcccagactactaaggagtaaat
ggcaggaaataatcaaactctgggctaaaatcaaccaagtagaaacaaaa
agaactatacaaagaatcaaccaaaccaggagctggttcttggagaaaat
caacaagataaataaatccttaggcagactaaccagagggcacagagaca
gtatccaaaatgaaaagggaaatataacaacagaaactgaggaaattttt
tttaaaaatcatcaaatcctactacaaaagcctatcctctataaaaatgg
aaaatttggataaagtttacaattttttatacagacaccaaatacctaag
tcaagtcagaatcagataaaccatctaaacagtcccatgacacttaagaa
atagaagtagtcattaaaagtcacccaacaacaacaacaaaaagaccaga
tgggtttagtgcaggattctatcagacttcaaataacaccttctatcaat
actcttcaaactattccaccaatagaaacagaagaacactacacagttca
ttatatgaaaaaaacagttatgctgcataattcttctggagatgggatgg
tttctacttatcagaaagctgtcacaattcttcatagagccacttcataa
gagaatttttttctacttctattcagtttactgtccaaatagaattttta
agtggtgatcccactaatagggggtgtgcaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19606449_19607636
seq2: B6Ng01-322H04.b_47_1253 (reverse)

seq1  GAGAG---AAATATCTGGAA-GGCACA-GCCT-GCAAAGG-AAATA--GT  41
      |||||   |||| ||||||| |||||| |||| ||||||| |||||   |
seq2  GAGAGGGAAAATTTCTGGAAGGGCACACGCCTGGCAAAGGTAAATAAGTT  50

seq1  TCTG-CTGCCTGA-GAGGAAGTCAGCAA-TCATTTTAGGAACAATGTTGG  88
      |||| |||||||| |||||||||||||| ||||||||||||||||||| |
seq2  TCTGTCTGCCTGAGGAGGAAGTCAGCAATTCATTTTAGGAACAATGTT-G  99

seq1  AAATGTGCAAGATA--TCCA-TGAAGGAGAGATGACTGAGCAG-AAAATA  134
      ||||||   |||||  |||| |||| ||||||||||||||||| ||||||
seq2  AAATGTTGCAGATAATTCCATTGAAAGAGAGATGACTGAGCAGAAAAATA  149

seq1  CATTGGGGTATGGAGTCGAGAATCCCTGTGGATTAGGAGGATCATGAGGG  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTATGGAGTCGAGAATCCCTGTGGATTAGGAGGATCATGAGGG  199

seq1  CATTTTCTGTTA-TAG-CCATAAT-AAAAATGAAAAAT-ATAACTGAGAA  230
      || ||||||||| ||| ||||||| ||||||||||||| |||||||||||
seq2  CA-TTTCTGTTATTAGCCCATAATAAAAAATGAAAAATAATAACTGAGAA  248

seq1  AAAAGTTAAACTTGTC-TTTGAAGAAGAGAACAGTCCCAAGAGGATGAAG  279
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAACTTGTCTTTTGAAGAAGAGAACAGTCCCAAGAGGATGAAG  298

seq1  TCGTTAAAAGTGTAGTTCTCATATTCCATCATATTTCCTTCTATTTTACC  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAAAGTGTAGTTCTCATATTCCATCATATTTCCTTCTATTTTACC  348

seq1  TGCAAAGAGATCATTCGTTATTTGTGAAAAAGTTGTTAAATCTATGACTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAGATCATTCGTTATTTGTGAAAAAGTTGTTAAATCTATGACTT  398

seq1  ACTTATAATTTTACATAGTGAAGTGGGTTGATATGTAATTTGTATTCACC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAATTTTACATAGTGAAGTGGGTTGATATGTAATTTGTATTCACC  448

seq1  ATCAAGTGCCTCATAGAGAGCTTCAGAGTAGATGTGTTATAAGTGCATGG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGCCTCATAGAGAGCTTCAGAGTAGATGTGTTATAAGTGCATGG  498

seq1  TTTTTTGTTCTAACAAAATTTAATATTTAGTTTGGAATTGACTGTTTTAT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTCTAACAAAATTTAATATTTAGTTTGGAATTGACTGTTTTAT  548

seq1  ATTTCAGATTTTGTAACTGCACTTACTTTCATATGTTTTACTCAAGCCCA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATTTTGTAACTGCACTTACTTTCATATGTTTTACTCAAGCCCA  598

seq1  CTCATTACTTGAATAAACTTTTCACAATTGCACATCCTGTGTAATCTCCA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACTTGAATAAACTTTTCACAATTGCACATCCTGTGTAATCTCCA  648

seq1  CTTGGGTTTCTGTAGGGTTCGACTCTCCCTAGAACCTGGGCATTGTAAAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTTCTGTAGGGTTCGACTCTCCCTAGAACCTGGGCATTGTAAAA  698

seq1  CTATTCATTAATTAACTGTATATTCCAGTTGAAACCCAGATTTTCCTGCT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTAATTAACTGTATATTCCAGTTGAAACCCAGATTTTCCTGCT  748

seq1  CTTTTACAGTCTTCTTCACTTTAAATCTTGAATAAGGAAAAATGGGCTCT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAGTCTTCTTCACTTTAAATCTTGAATAAGGAAAAATGGGCTCT  798

seq1  AGTTATGAAAGGGAGTAAGGAAGATTAACAGCAGCATGAAATGTGTGGGT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAAGGGAGTAAGGAAGATTAACAGCAGCATGAAATGTGTGGGT  848

seq1  CATTTTGTGCTGAGTTTAACACAAAAAAGGGAGCTAACCATGATTAGTTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGCTGAGTTTAACACAAAAAAGGGAGCTAACCATGATTAGTTT  898

seq1  TAGAAACATTCAGTACTTCTTTCAAATGACTGTGATTAAACATCAGTGTG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATTCAGTACTTCTTTCAAATGACTGTGATTAAACATCAGTGTG  948

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAG  998

seq1  AGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAAAGACAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAAAGACAA  1048

seq1  AAACAATGATGGAGACAGAAATTTTGCATATATCTAAAATAATACTGTTT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGATGGAGACAGAAATTTTGCATATATCTAAAATAATACTGTTT  1098

seq1  TTCCTGAAAAGTTACTTTCAATCCTTAACTTACATAGTTCATTATTAACA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAAAGTTACTTTCAATCCTTAACTTACATAGTTCATTATTAACA  1148

seq1  CAACTAGTCTACAAAAGAGGCCTTCCTGATATCTACCTTGGTAGTCACAC  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTCTACAAAAGAGGCCTTCCTGATATCTACCTTGGTAGTCACAC  1198

seq1  ACAGAATTC  1188
      |||||||||
seq2  ACAGAATTC  1207