BAC Information

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BAC

Clone NameB6Ng01-322J14
Chromosome16 (Build37)
Map Location 60,541,023 - 60,542,207
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneBC043118, LOC672884, Arl6, LOC100043804
Downstream geneEG668168, LOC668170, LOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322J14.b
ACCGA111400
length1,171
definitionB6Ng01-322J14.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggaaactgggataagttatctaattactgaccgctgtagtgt
tgatgaagatattgatgctgatgttgatgctgtgatattgaatgctctac
cttaaaaagaaaatcagcaactcaacttcatatagtctcctaaatagctg
gaatatctccttagctacatttctaaatcaggacattttaatctgttctg
ctagttgtatgccttgaaaaattatgccatggggatcaacacaaaaattt
taactctggaagtgatgatatcccaccagaaccctatgaaggtaaatatt
gtatcctatagactgtaaaaaaaacttcagtacctaacaatcgcatatga
cagaagctctatttggaggagtaccaacacattgaatatgatcaaatgtc
attcctggagacctttgcacccaactgagaactatagaaatttatttata
ttaagtctgtgtatgcataataaaagcaaacaacactaagaagggaaagt
cccttcaatttttaagaatgaaaataaatactattattcacagatgccat
ttctaagctcatgtaaaattagtttctgtggatagaaaatttctcttatt
tctgcttaaaagtgaaggttgcaaaaaggtctttgaaaaaaactgattac
ttaaatatgcattgtttaaaattaaaacagctattgaattgtgaataaga
ttttaaatgaagtggtcataatttcttttaccagtggtaaaggaaaaatc
atgttagtatatttcaaaccttcagttttgtaatgtgttttcaaaaaagt
aagttgtctaaagcacatttaagacaaagttggaatacagaaaggacgga
agtagaaaggcttacaggactttgatgccttggaagcaatgggtagcacc
ttcagtgagcatagttaagtgggacacctttgtgggaggcatgagagagt
caggatatttattaatatatctcgaattggtaacactcggactagagaca
aatagcctttcatttcttctttctctctctcttttttttttttttgaaac
aatcagacctgtgtaggtggaggcagatgtatgacttcaagctccagatg
aggcagtgcaacagtttttataatactgtgcatagcacatggacatttat
ccctctttccttttttggccg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60541023_60542207
seq2: B6Ng01-322J14.b_44_1214 (reverse)

seq1  CGGCCAAAAAAGAGGAAGAGGATAAAAATGT-CATGTTGCTATTGCACAG  49
      |||||||||||| | ||||||  | |||||| |||| ||||| |||||||
seq2  CGGCCAAAAAAG-GAAAGAGG-GATAAATGTCCATG-TGCTA-TGCACAG  46

seq1  TATTAT-AAAACTGTTCCACTGGCTTCATCTTGGAACCTGAAGTCATTAC  98
      |||||| ||||||||| |||| || ||||| |||| | |||||||| |||
seq2  TATTATAAAAACTGTTGCACT-GCCTCATC-TGGAGCTTGAAGTCA-TAC  93

seq1  ATCTG-CTTCAACTACACAGGGTCTGATTTGTTTCAAAAAAAAAAAAAAA  147
      ||||| || || ||||||| ||||||| ||||||||||||||||||||| 
seq2  ATCTGCCTCCACCTACACA-GGTCTGA-TTGTTTCAAAAAAAAAAAAAA-  140

seq1  GAAGAAGAAGAAGAAAGAAAGAAAATGAAAGGCTATTTGTCTCTAGTCCG  197
           |||   ||||||||   ||||||||||||||||||||||||||||
seq2  ----GAGAGAGAGAAAGAA--GAAATGAAAGGCTATTTGTCTCTAGTCCG  184

seq1  AGTGTTACCAATTTCGAGATATATTTAATAAATATCCTGACTCTCTCATG  247
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGTGTTACCAA-TTCGAGATATA-TTAATAAATATCCTGACTCTCTCATG  232

seq1  CCTCCCACAAAGGTGTCCCACTTAACTATGCTCACTGAAGGTGCTACCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACAAAGGTGTCCCACTTAACTATGCTCACTGAAGGTGCTACCCA  282

seq1  TTGCTTCCAAGGCATCAAAGTCCTGTAAGCCTTTCTACTTCCGTCC-TTC  346
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGCTTCCAAGGCATCAAAGTCCTGTAAGCCTTTCTACTTCCGTCCTTTC  332

seq1  TGTATTCCAACTTTGTCTTAAATGTGCTTTAGACAACTTACTTTTTTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCAACTTTGTCTTAAATGTGCTTTAGACAACTTACTTTTTTGAA  382

seq1  AACACATTACAAAACTGAAGGTTTGAAATATACTAACATGATTTTTCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTACAAAACTGAAGGTTTGAAATATACTAACATGATTTTTCCTT  432

seq1  TACCACTGGTAAAAGAAATTATGACCACTTCATTTAAAATCTTATTCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGGTAAAAGAAATTATGACCACTTCATTTAAAATCTTATTCACA  482

seq1  ATTCAATAGCTGTTTTAATTTTAAACAATGCATATTTAAGTAATCAGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAGCTGTTTTAATTTTAAACAATGCATATTTAAGTAATCAGTTT  532

seq1  TTTTCAAAGACCTTTTTGCAACCTTCACTTTTAAGCAGAAATAAGAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGACCTTTTTGCAACCTTCACTTTTAAGCAGAAATAAGAGAAA  582

seq1  TTTTCTATCCACAGAAACTAATTTTACATGAGCTTAGAAATGGCATCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCCACAGAAACTAATTTTACATGAGCTTAGAAATGGCATCTGT  632

seq1  GAATAATAGTATTTATTTTCATTCTTAAAAATTGAAGGGACTTTCCCTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAGTATTTATTTTCATTCTTAAAAATTGAAGGGACTTTCCCTTC  682

seq1  TTAGTGTTGTTTGCTTTTATTATGCATACACAGACTTAATATAAATAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTGTTTGCTTTTATTATGCATACACAGACTTAATATAAATAAAT  732

seq1  TTCTCTAGTTCTCAGTTGGGTGCAAAGGTCTCCAGGAATGACATTTGATC  796
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGTTCTCAGTTGGGTGCAAAGGTCTCCAGGAATGACATTTGATC  782

seq1  ATATTTAATGTGTTGCTACTACTCCAAATAGAGCTTCTGTCATATGCGAC  846
      ||||| ||||||||| |||| |||||||||||||||||||||||||||| 
seq2  ATATTCAATGTGTTGGTACTCCTCCAAATAGAGCTTCTGTCATATGCGAT  832

seq1  TGTTAGGTACTGAAGTTTTTTTTACAGTCTATAGGATACAATATTTACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTACTGAAGTTTTTTTTACAGTCTATAGGATACAATATTTACCT  882

seq1  TCATAGGGTTCTGGTGGGATATTATCACTTCCAGAGTTAAAATTTTTGTG  946
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCATAGGGTTCTGGTGGGATATCATCACTTCCAGAGTTAAAATTTTTGTG  932

seq1  TTGATCCCCATGGCATAATTTTTCAAGGCATACAACTAGCAGAACAGATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCCATGGCATAATTTTTCAAGGCATACAACTAGCAGAACAGATT  982

seq1  AAAATGTCCTGATTTAGAAATGTAGCTAAGGAGATATTCCAGCTATTTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCTGATTTAGAAATGTAGCTAAGGAGATATTCCAGCTATTTAG  1032

seq1  GAGACTATATGAAGTTGAGTTGCTGATTTTCTTTTTAAGGTAGAGCATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATATGAAGTTGAGTTGCTGATTTTCTTTTTAAGGTAGAGCATTC  1082

seq1  AATATCACAGCATCAACATCAGCATCAATATCTTCATCAACACTACAGCG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACAGCATCAACATCAGCATCAATATCTTCATCAACACTACAGCG  1132

seq1  GTCAGTAATTAGATAACTTATCCCAGTTTCCAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATTAGATAACTTATCCCAGTTTCCAAGAATTC  1171