BAC Information

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BAC

Clone NameB6Ng01-323B21
Chromosome16 (Build37)
Map Location 90,200,547 - 90,201,680
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440
Downstream geneSod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323B21.bB6Ng01-323B21.g
ACCGA111780GA111781
length1,1151,183
definitionB6Ng01-323B21.b B6Ng01-323B21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttagaaggttgagtggcactccactgtatgtacccatcccac
ggccttcgtctccttgtcttctgagaggctaatgtctcggttgttgtgag
cgccctgccgtgaacagggaagtgtggacagcaattcaacattctagttt
ccatggtggcccaggtctgtaaccctagcactcaggtgaggcaggaatat
ccaagttcaaggccagcctgggcaatatagtgtgaccttgtcttaaataa
agaaataaacagcttccagtacagtgtcggctggctagaacagggacagt
tccagatggtccctacccgattcctcatctggtttaaagtcttctgatgt
tcaccactgagctggctgtacggactggggacttccctactgttcataac
ctcttgaaagtttctttcgtttggaaagtggttttgtcaaatgcttttcc
tgaatgtattgctatgattgtgttatttttgtcctttattataatttcca
tatgctgaggcccctaataattatggtgtgtgaccctttatgtgcagtta
gttgtagctgagttgggactgtttgtaaagaactttttttttttaagttg
acagcatattctttatggatactggtctatagtttgttttttttttttct
tcaaatatctttgtctgtctttggttctgggtaatattggtcccatgaaa
tgaatctgaaaggttttttttcttcatgtttcttctggaagagattacga
aagattagcagtagatttttttttttaaatatttgggagcatctagcaat
gacatgatctggctctgataaccaatcctattaatccaatcgccgtatta
gttacaactgttctgccctcctttgccattctggtgttctgcggcgggga
gcacatagattttcagtgttgcgtctttccaggatactgacatctttatc
attaagtcacactctgccccttgtgagtctgaccccagctctattttgtg
atatagatagccaggcaacctgctctctcggggggtattctctcctgtcc
ctttagctctgtgcttaaatccagcaattcttatagaaacatatatttca
cttatttcaatccat
gaattccgagagcatgctgaatccttgtaagtaactctgatccttcttaa
tccctccccttaactggaaggtggcactaaaagccttttgttctcatgct
ggctgtgttaaccctatttctcctggtttgatcctgcactcaccagaagt
ggcgctgaaagaaaaagttttgaatgctgtgaagcacagtcagacggacg
tatataagccgcagtgctcgtctcatatttaagcctctcgtagataaggg
agcagtatgggaaattcacattctgtaactacagctctacactctgtttt
aaaacagcgagagataaaagtttctacaagaaccttagaaacgttcatta
aggaaatagaacgtatatcaccttggtacgcgtgttcagggtcgttaact
ctttcctcttgggagaaattaagggaagacttagctaaggaacaacagaa
tgggaaattaaaggcagggaccatgccattatggaaactggtgagatcgt
gcctggaggatgagagatgccgtccagcaataataacagggcaggcaata
ttagaagaagcacaggacagcatggcagaaacggaatggtgtgaaaggtt
aggagctccaaaaaaggaaaatgtgcacaaagtaaaaagcccttccagag
accttgagtcagaggaagtgaaaaatttgaggataagtcctcagggagag
aaaaaggaaaaggagaaagttcagaaaaggaaaagcctttatccggtaaa
ggaactagaggctttaaagcttgatagtttaaaagcagatgagcttagct
cctctgaggaagaggagtcgcattatgaggcagctcattataaaaagaaa
gataccatccagaggaaaggcgagtgaagaaatcagagaaaaaattaaaa
gttactggagacacagaacagccaccctctgggccttctagtctcaatac
acctccaccttatgtggagaattttattctgattctttttctttcaagga
ggaaaaagaaaaattatatcaaggcattccctgtcttgaagctgcagatg
ggaggggcgagtacaccgcccccggtgggagtatactcagaataaaagga
cctggctgagtcggtttcgcatatgagttaggtccacttcaactctccaa
tttggaaagattgtgctctacacatctgacgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90200547_90201680
seq2: B6Ng01-323B21.b_49_1163

seq1  GAATTCTTTTAGAAGGTTGAGTGGCACTCCACTGTATGTACCCATCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGAAGGTTGAGTGGCACTCCACTGTATGTACCCATCCCAC  50

seq1  GGCCTTCGTCTCCTTGTCTTCTGAGAGGCTAATGTCTCGGTTGTTGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCGTCTCCTTGTCTTCTGAGAGGCTAATGTCTCGGTTGTTGTGAG  100

seq1  CGCCCTGCCGTGAACAGGGAAGTGTGGACAGCAATTCAACATTCTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGCCGTGAACAGGGAAGTGTGGACAGCAATTCAACATTCTAGTTT  150

seq1  CCATGGTGGCCCAGGTCTGTAACCCTAGCACTCAGGTGAGGCAGGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGGCCCAGGTCTGTAACCCTAGCACTCAGGTGAGGCAGGAATAT  200

seq1  CCAAGTTCAAGGCCAGCCTGGGCAATATAGTGTGACCTTGTCTTAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCAAGGCCAGCCTGGGCAATATAGTGTGACCTTGTCTTAAATAA  250

seq1  AGAAATAAACAGCTTCCAGTACAGTGTCGGCTGGCTAGAACAGGGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAACAGCTTCCAGTACAGTGTCGGCTGGCTAGAACAGGGACAGT  300

seq1  TCCAGATGGTCCCTACCCGATTCCTCATCTGGTTTAAAGTCTTCTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGGTCCCTACCCGATTCCTCATCTGGTTTAAAGTCTTCTGATGT  350

seq1  TCACCACTGAGCTGGCTGTACGGACTGGGGACTTCCCTACTGTTCATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTGAGCTGGCTGTACGGACTGGGGACTTCCCTACTGTTCATAAC  400

seq1  CTCTTGAAAGTTTCTTTCGTTTGGAAAGTGGTTTTGTCAAATGCTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAAGTTTCTTTCGTTTGGAAAGTGGTTTTGTCAAATGCTTTTCC  450

seq1  TGAATGTATTGCTATGATTGTGTTATTTTTGTCCTTTATTATAATTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATTGCTATGATTGTGTTATTTTTGTCCTTTATTATAATTTCCA  500

seq1  TATGCTGAGGCCCCTAATAATTATGGTGTGTGACCCTTTATGTGCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAGGCCCCTAATAATTATGGTGTGTGACCCTTTATGTGCAGTTA  550

seq1  GTTGTAGCTGAGTTGGGACTGTTTGTAAAGAACTTTTTTTTTTTAAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGCTGAGTTGGGACTGTTTGTAAAGAACTTTTTTTTTTTAAGTTG  600

seq1  ACAGCATATTCTTTATGGATACTGGTCTATAGTTTGTTTTTTTTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATTCTTTATGGATACTGGTCTATAGTTTGTTTTTTTTTTTTCT  650

seq1  TCAAATATCTTTGTCTGTCTTTGGTTCTGGGTAATATTGGTCCCATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATCTTTGTCTGTCTTTGGTTCTGGGTAATATTGGTCCCATGAAA  700

seq1  TGAATCTGAAAGG-TTTTTTTCTTCATGTTTCTTCTGGAAGAGATTACGA  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGAAAGGTTTTTTTTCTTCATGTTTCTTCTGGAAGAGATTACGA  750

seq1  AAGATTAGCAGTAGA-TTTTTTTTTTAAATATTTGGGAGCATCTAGCAAT  798
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGATTAGCAGTAGATTTTTTTTTTTAAATATTTGGGAGCATCTAGCAAT  800

seq1  GACATGATCTGGCTCTGATAACCAATCCTATTAATCCAATCGCCGTATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATCTGGCTCTGATAACCAATCCTATTAATCCAATCGCCGTATTA  850

seq1  GTTACAACTGTTCTGCCCTCCTTTGCCATTCTGGTGTTCTGCGGCGGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACTGTTCTGCCCTCCTTTGCCATTCTGGTGTTCTGCGGCGGGGA  900

seq1  GCACATAGATTTTCAAGTGTTGCGTCTTTCCAGGATACTGACATCTTTAT  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCACATAGATTTTC-AGTGTTGCGTCTTTCCAGGATACTGACATCTTTAT  949

seq1  CATTAAGTCACACCTCTGCCCCTTGTGAGTCTGACCCCAGCTCTATTTTG  998
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTCACA-CTCTGCCCCTTGTGAGTCTGACCCCAGCTCTATTTTG  998

seq1  TTGATATAAGGATAGCCAGCCACCCTTGCTCTCTCGGGGGGGTATCTTCT  1048
       |||||||  ||||||||| || || ||||||||| |||||||||  |||
seq2  -TGATATA--GATAGCCAGGCAACC-TGCTCTCTC-GGGGGGTATTCTCT  1043

seq1  CCTGTCCCTTTAGCTTCCTTGTGGCCTTAAATCCACAGCAATTCTTATAG  1098
      |||||||||||||||    ||||  ||||||||  |||||||||||||||
seq2  CCTGTCCCTTTAGCT---CTGTG--CTTAAATC--CAGCAATTCTTATAG  1086

seq1  AAAACATATAATTTCACCTTTTATTTTTAAATCCAT  1134
       |||||||| |||||||   |||  ||| |||||||
seq2  -AAACATAT-ATTTCAC---TTA--TTTCAATCCAT  1115