BAC Information

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BAC

Clone NameB6Ng01-323H05
Chromosome16 (Build37)
Map Location 31,066,892 - 31,067,937
singlet/doubletsinglet
Overlap geneAI480653
Upstream geneHes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H05.b
ACCGA112022
length1,053
definitionB6Ng01-323H05.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaatctgcccggagcttctgctggcttgtccctgccttcagcc
cctgccctcagcccagaccttggtgggtagtgccagcccaggatgcacag
gctgaggtcaggtctttctcttctggcttcctagtgtgtctgatctttag
cttctcacctgtaagtgatgggttaattacttttccattacagtaacaaa
ctaacagatattcactctataaagggaggttggttggtttgtttatttga
actggaattgcgtctagggcctcttgcataccatgcgaatgcgctaccat
caagttatactcttagcccaccaaggatcattttatataactggtttaac
ctttcatcccataatcaaacaaaaccattttttaacgatctctggtgggg
tgtcagatggcaacatcaggaagcacacagtgtagaccccccttcacttg
tttgggaattgaaagaagggaaaaaggaaggcaagaactcacttccaagg
gctcacctccatttcattaagaactcccactctgggctacgagatggctc
atttggtataatgtttactgagcaatcatgaagacctgatcccaccaccc
caccagtcctgtaaaaaccaagatgtggtggcctttgtctttaaccctag
tgctgggacacaggattgtccttttggctgccactctcgctggcagagtg
gaggacttcagtgtgcctgctggccactgctgcctgtacacactttcaca
tgtacccattccacaggtttcaatgcgtacaccggctgtattttcctgta
acacccctactgactagcaagattttttccttctcttttctgggaggtgt
tttattcacatatgtggcaaaatggggtggaatacacgccccccaaccac
tggatcagtctgctactcacttacgatctgagataggcctccaggaagaa
tgccaccactgtcttgcaggttgtatctagaacaagaggctaagagatag
gggaaaagccaatttgttcagctcttccctggggtagtttcctgaattga
gcc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31066892_31067937
seq2: B6Ng01-323H05.b_42_1094 (reverse)

seq1  GGCTCATTCCAGG-AACTACCCCA-GGAAGAGCTGAAC-AATAGCCTCTT  47
      |||||| | |||| |||||||||| ||||||||||||| ||| | || ||
seq2  GGCTCAATTCAGGAAACTACCCCAGGGAAGAGCTGAACAAATTGGCTTTT  50

seq1  CCCCTCATCTCCTAGCCTC-TGTTC-AGA-ACAAATTCTAGAACAGTGCT  94
      ||||| ||||| ||||||| ||||| ||| ||||  |  |  |||||| |
seq2  CCCCT-ATCTCTTAGCCTCTTGTTCTAGATACAACCTGCAAGACAGTGGT  99

seq1  CGCA-ACTTCCTGG-TACCCATTTTAGATCCT-AGTAAGAGAACTAACTG  141
       |||  ||||||||   || || | ||||| | ||| ||  | |  ||||
seq2  GGCATTCTTCCTGGAGGCCTATCTCAGATCGTAAGTGAG-TAGCAGACTG  148

seq1  CTCACGTGACTCAGGGCTGGAAAGTCCCCACCCTTCTGCCAC-CATCTGC  190
       ||  |||  |  |||  |   | ||| | || || ||||||  || || 
seq2  ATCCAGTGGTTGGGGGGCGTGTATTCCACCCCATTTTGCCACATATGTGA  198

seq1  ATAAAGGGCCTCCCAGAGGCTCGGATGGAAAAGAACTTGCTAGTCAGCCT  240
      |||||   |||||||||      || |||||| | ||||||||||||   
seq2  ATAAAACACCTCCCAGA-AAAGAGAAGGAAAAAATCTTGCTAGTCAGTAG  247

seq1  GTGCGTTACAGGAAAATGACAGAAGGTGTAAGAGCAGAGACCCGTGGAAG  290
      | | ||||||||||||| ||||  |||||| |    || ||| |||||| 
seq2  GGGTGTTACAGGAAAAT-ACAGCCGGTGTACGCATTGAAACCTGTGGAAT  296

seq1  CTGTATGTGTGAGAGTGTGTACAGGCAGCAGAGGCCAGATTAGCAC-CTG  339
        |||  ||||| |||||||||||||||||| ||||||    |||| |||
seq2  GGGTACATGTGAAAGTGTGTACAGGCAGCAGTGGCCAG-CAGGCACACTG  345

seq1  AAGTCATCCACTCTGCCAGCCTGAGTGGCAACC-AAAGGACACTCCTGTC  388
      ||||| ||||||||||||||  |||||||| || |||||||| |||||| 
seq2  AAGTCCTCCACTCTGCCAGCGAGAGTGGCAGCCAAAAGGACAATCCTGTG  395

seq1  TCCCAGCACTAGGGTTAAAGACAAGGGCCACCACATCTTGGTTTTTACAG  438
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCAGCACTAGGGTTAAAGACAAAGGCCACCACATCTTGGTTTTTACAG  445

seq1  GACTGCTGGGGTGGTGGGATCAGGTCTTCATGCTTGCCCAGTAAACATTT  488
      ||||| |||||||||||||||||||||||||| |||| ||||||||||| 
seq2  GACTGGTGGGGTGGTGGGATCAGGTCTTCATGATTGCTCAGTAAACATTA  495

seq1  TACCAAATGAGCCATCTCCTAGCCCAGAGTGGGAGTTCTTAATGAACTGG  538
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TACCAAATGAGCCATCTCGTAGCCCAGAGTGGGAGTTCTTAATGAAATGG  545

seq1  AGGTGAGCCCTTGGAAGTGAGTTCTTGCCTTCCTTTTTCCCTTCTTTCAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCCCTTGGAAGTGAGTTCTTGCCTTCCTTTTTCCCTTCTTTCAA  595

seq1  TTCCCAAACAAGTGAAGGGGGGTCTACACTGTGTGCTTCCTGCTGCTGCC  638
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TTCCCAAACAAGTGAAGGGGGGTCTACACTGTGTGCTTCCTGATGTTGCC  645

seq1  ATCTGACACCCCACCAGAGATCGTTAAAAAATGGTTTTGTTTGATTATGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACCCCACCAGAGATCGTTAAAAAATGGTTTTGTTTGATTATGG  695

seq1  GCTGAAAGGTTAAACCAGTTATCTAAAATGATCCTTGGTGGGCTAAGACT  738
      | |||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  GATGAAAGGTTAAACCAGTTATATAAAATGATCCTTGGTGGGCTAAGAGT  745

seq1  ATAACTTGATGGTAGCGCATTCGCCTGGTATGCAAGAGGCCCTAGATGCA  788
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  ATAACTTGATGGTAGCGCATTCGCATGGTATGCAAGAGGCCCTAGACGCA  795

seq1  ATTCCAGTTCAAATAAACAAACCAACCAACCTCCCTTTATAGACTGAATA  838
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCCAGTTCAAATAAACAAACCAACCAACCTCCCTTTATAGAGTGAATA  845

seq1  TCTGTTAGTTTGTTACTGTAATGGAAAAGTAATTAACCCATCACTTACAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGTTTGTTACTGTAATGGAAAAGTAATTAACCCATCACTTACAG  895

seq1  GTGAGAAGCTAAAGCTCAGACACACTAGGAAGCCAGAAGAGAAAGACCTG  938
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGCTAAAGATCAGACACACTAGGAAGCCAGAAGAGAAAGACCTG  945

seq1  ACCTCAGCCTGTGCATCCTGGGCTGGCACTACCCACCAAGGTCTGGGCTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCCTGTGCATCCTGGGCTGGCACTACCCACCAAGGTCTGGGCTG  995

seq1  AGGGCAGGGGCTGAAGGCAGGGACAAGCCAGCAGAAGCTCCGGGCAGATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGGCTGAAGGCAGGGACAAGCCAGCAGAAGCTCCGGGCAGATT  1045

seq1  AGGAATTC  1046
      ||||||||
seq2  AGGAATTC  1053