BAC Information

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BAC

Clone NameB6Ng01-323K24
Chromosome16 (Build37)
Map Location 41,593,313 - 41,788,441
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323K24.bB6Ng01-323K24.g
ACCGA112203GA112204
length1,1741,071
definitionB6Ng01-323K24.b B6Ng01-323K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,787,261 - 41,788,441)(41,593,313 - 41,594,397)
sequence
gaattctgtgacttttttttttcctagtacatttacacatagctctagca
tcagctctggttcaaagccaaaggaccatttccagacatttccctttcat
gtttgttctaaacacctgctgtagtctgtagccaccagtcctctctgtag
atctcaccacttctttcttttctcctcatttgggtgtttagatactttat
gtgggggactcgttgtcctttattcacgcaggtgttctgtatgcctcaat
gtttcaagatcaagtcattgctttggagaggtgatggaaattgcatccct
tgaggccacattttgctaagtgagcatttacacacatacaggtttagagt
tcgctatactctctgaggtgttcactctcttttcatttatacgttccata
tctgaggcttcaactctctcttatgcatgtttacatattgtgcagtctgc
acaaattacactctatctagtgcctttcctccttaatatcacctagcttt
aaaaacagctattccaaccaatgcttaacagatgttgaatgcggtgcagt
gctttaaagcattctaattatctgttgtcattgtttagcagtaaatgaat
gttcaagcatttttatgcactgtagtggcagtgaagtgttctgagagaca
attacttcttagtcctttcttatatcagacccagtgctatcacatactgt
cgaaacttgggggagttggggtgaagacaaggaagagagaagaaggagaa
gaaaaaactctctctagtttctccttttgaaaacgtaatgattttttttt
tcctcctggaaggaaatcaaaggctgcatgaaatgtctgccccttttaaa
aatggaagctgatttttttttaatgccaggcacttttatcccttgtagct
ttaaaggcaagggaatgaatgaaatgtgagaaattgaaggacatgtgaca
gcatcaaagaagccaagccaaagtggggagttgttgtgtctgggctattg
tcaggccagggtgggcctttttagtaggccattagcattctgctgcagat
gaagtctttataaaggcagaaagatgtataagctctttttgaatgccctc
agatctcctttccttggccctccaattcactccatcactcttgtctacag
gccatcacttacccaatcatctgc

gaattccaaacttcttacccagatggcttcagtggttctctccatgctac
tggagtatttgcttcagtatcacagaccctttgtcatacctactccttct
tcatctacaataccccgtgtccctacccttcccttacacagacaatggag
gagattactgttcccaccccaatccactggagggtctgtcctagatctgt
ttttactttctatttttatttgaaattataaaagtacgtaaatctcttca
acacatcggatctgtatctgtttccatatctccatttatagttctacata
atgtgtcagtattcagtctcccttcctgggttatttttatatctccattg
ggaaatcccactgttgcttaccttctcctttcagtgctcacatatttaaa
accttgctctccatattctccacagggattagcaaaagcctcttctctgt
tgaaatattttgtattttacatagagaactagttttcattcatctatgga
taagaacaaagttgggatgatcagaggagatggatctgttgggaaagtgc
ttgatgtgcaaagttaaggaccactgagggcgagggggaagaagtcaggc
atactttcacatgcttgtaatcctagtgctagaaggtagagaaaggtcta
tccctggaatttgcctgccagtaagcctaactgaatcaggaaatcccaga
gcccagtaagagacccccaactcaataaacaaataaataaataaacaaac
aaacaaataaatataaaaaacaaaaacaaaaatgttattcatacttagat
gctcatatatttaaaaccttgaaatggaagaagctggatagtccagagac
ctagtatcgaacccaccttgactgggaaaagaagtcaatgaaatgattcc
aaatgatactccgctatatccatagattggtgtctaccccaaatgtcatc
agagagtcttcatccagaatctaagaaacagatgcagacacttgcattag
tgagatcaggaatctgtgaaaatggggagaaagtatagagagcagagagt
caagacaccccatgaaatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41787261_41788441
seq2: B6Ng01-323K24.b_46_1219 (reverse)

seq1  GCAGATGGTTGTGGTAAGTGAGATGGCACTGGGTAGGACAAGA-TGATGG  49
      ||||||| ||| |||||||  |||||| ||  ||| ||||||| ||||||
seq2  GCAGATGATTG-GGTAAGT--GATGGC-CT--GTA-GACAAGAGTGATGG  43

seq1  AGTGAAAAGGGAGGGGGCAGAGGAAGGAGATTTCTTTGA-AGCA-TCAAA  97
      ||||||  ||   ||| ||  | |||||||    | |||  ||| |||||
seq2  AGTGAATTGG--AGGGCCAAGGAAAGGAGA----TCTGAGGGCATTCAAA  87

seq1  AAGACTTTATACATCTTTTCTGCCCTTTTATAAAGACTTCATCTGGCAGC  147
      ||||  ||||||||| ||||||||  |||||||||||||||||| |||| 
seq2  AAGAGCTTATACATC-TTTCTGCC--TTTATAAAGACTTCATCT-GCAG-  132

seq1  CAGATTGCCTTAATGGCCTACCTAAAAAGGCCCACCCTGGCCTGAC-ATA  196
      |||| |||  |||||||||| ||||||||||||||||||||||||| |||
seq2  CAGAATGC--TAATGGCCTA-CTAAAAAGGCCCACCCTGGCCTGACAATA  179

seq1  G-CCAGACACA--CACTCCCCACTTTGGCTTGGCTTCTTTGATGCTGTCA  243
      | |||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACACAACAACTCCCCACTTTGGCTTGGCTTCTTTGATGCTGTCA  229

seq1  CATGTCCTTC-ATTTCTCACATTTCATTCATT-CCTTGCCTTT-AAGCTA  290
      |||||||||| ||||||||||||||||||||| |||||||||| ||||||
seq2  CATGTCCTTCAATTTCTCACATTTCATTCATTCCCTTGCCTTTAAAGCTA  279

seq1  CAA-GGATAAAAGTGCCTGGCATT-AAAAAAAATCAGCTTCCATTTTT-A  337
      ||| |||||||||||||||||||| ||||||||||||||||||||||| |
seq2  CAAGGGATAAAAGTGCCTGGCATTAAAAAAAAATCAGCTTCCATTTTTAA  329

seq1  AAGGGGCAGACATTTCATGCAGCCTTTGATTTCCTTCCAGGAGG-AAAAA  386
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGGGCAGACATTTCATGCAGCCTTTGATTTCCTTCCAGGAGGAAAAAA  379

seq1  AAAATCATTACGTTTTCAAAAGGAGAAACTAGAGAGAGTTTTTTCTTCTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTACGTTTTCAAAAGGAGAAACTAGAGAGAGTTTTTTCTTCTC  429

seq1  CTTCTTCTCTCTTCCTTGTCTTCACCCCAACTCCCCCAAGTTTCGACAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTCTTCCTTGTCTTCACCCCAACTCCCCCAAGTTTCGACAGT  479

seq1  ATGTGATAGCACTGGGTCTGATATAAGAAAGGACTAAGAAGTAATTGTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAGCACTGGGTCTGATATAAGAAAGGACTAAGAAGTAATTGTCT  529

seq1  CTCAGAACACTTCACTGCCACTACAGTGCATAAAAATGCTTGAACATTCA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACACTTCACTGCCACTACAGTGCATAAAAATGCTTGAACATTCA  579

seq1  TTTACTGCTAAACAATGACAACAGATAATTAGAATGCTTTAAAGCACTGC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCTAAACAATGACAACAGATAATTAGAATGCTTTAAAGCACTGC  629

seq1  ACCGCATTCAACATCTGTTAAGCATTGGTTGGAATAGCTGTTTTTAAAGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATTCAACATCTGTTAAGCATTGGTTGGAATAGCTGTTTTTAAAGC  679

seq1  TAGGTGATATTAAGGAGGAAAGGCACTAGATAGAGTGTAATTTGTGCAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATATTAAGGAGGAAAGGCACTAGATAGAGTGTAATTTGTGCAGA  729

seq1  CTGCACAATATGTAAACATGCATAAGAGAGAGTTGAAGCCTCAGATATGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAATATGTAAACATGCATAAGAGAGAGTTGAAGCCTCAGATATGG  779

seq1  AACGTATAAATGAAAAGAGAGTGAACACCTCAGAGAGTATAGCGAACTCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATAAATGAAAAGAGAGTGAACACCTCAGAGAGTATAGCGAACTCT  829

seq1  AAACCTGTATGTGTGTAAATGCTCACTTAGCAAAATGTGGCCTCAAGGGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTATGTGTGTAAATGCTCACTTAGCAAAATGTGGCCTCAAGGGA  879

seq1  TGCAATTTCCATCACCTCTCCAAAGCAATGACTTGATCTTGAAACATTGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTCCATCACCTCTCCAAAGCAATGACTTGATCTTGAAACATTGA  929

seq1  GGCATACAGAACACCTGCGTGAATAAAGGACAACGAGTCCCCCACATAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAGAACACCTGCGTGAATAAAGGACAACGAGTCCCCCACATAAA  979

seq1  GTATCTAAACACCCAAATGAGGAGAAAAGAAAGAAGTGGTGAGATCTACA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAAACACCCAAATGAGGAGAAAAGAAAGAAGTGGTGAGATCTACA  1029

seq1  GAGAGGACTGGTGGCTACAGACTACAGCAGGTGTTTAGAACAAACATGAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACTGGTGGCTACAGACTACAGCAGGTGTTTAGAACAAACATGAA  1079

seq1  AGGGAAATGTCTGGAAATGGTCCTTTGGCTTTGAACCAGAGCTGATGCTA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGTCTGGAAATGGTCCTTTGGCTTTGAACCAGAGCTGATGCTA  1129

seq1  GAGCTATGTGTAAATGTACTAGGAAAAAAAAAAGTCACAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGTGTAAATGTACTAGGAAAAAAAAAAGTCACAGAATTC  1174


seq1: chr16_41593313_41594397
seq2: B6Ng01-323K24.g_65_1135

seq1  GAATTCCAAACTTCTTACCCAGATGGCTTCAGTGGTTCTCTCCATGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTTCTTACCCAGATGGCTTCAGTGGTTCTCTCCATGCTAC  50

seq1  TGGAGTATTTGCTTCAGTATCACAGACCCTTTGTCATACCTACTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATTTGCTTCAGTATCACAGACCCTTTGTCATACCTACTCCTTCT  100

seq1  TCATCTACAATACCCCGTGTCCCTACCCTTCCCTTACACAGACAATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACAATACCCCGTGTCCCTACCCTTCCCTTACACAGACAATGGAG  150

seq1  GAGATTACTGTTCCCACCCCAATCCACTGGAGGGTCTGTCCTAGATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACTGTTCCCACCCCAATCCACTGGAGGGTCTGTCCTAGATCTGT  200

seq1  TTTTACTTTCTATTTTTATTTGAAATTATAAAAGTACGTAAATCTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCTATTTTTATTTGAAATTATAAAAGTACGTAAATCTCTTCA  250

seq1  ACACATCGGATCTGTATCTGTTTCCATATCTCCATTTATAGTTCTACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCGGATCTGTATCTGTTTCCATATCTCCATTTATAGTTCTACATA  300

seq1  ATGTGTCAGTATTCAGTCTCCCTTCCTGGGTTATTTTTATATCTCCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGTATTCAGTCTCCCTTCCTGGGTTATTTTTATATCTCCATTG  350

seq1  GGAAATCCCACTGTTGCTTACCTTCTCCTTTCAGTGCTCACATATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCCACTGTTGCTTACCTTCTCCTTTCAGTGCTCACATATTTAAA  400

seq1  ACCTTGCTCTCCATATTCTCCACAGGGATTAGCAAAAGCCTCTTCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTCTCCATATTCTCCACAGGGATTAGCAAAAGCCTCTTCTCTGT  450

seq1  TGAAATATTTTGTATTTTACATAGAGAACTAGTTTTCATTCATCTATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTTGTATTTTACATAGAGAACTAGTTTTCATTCATCTATGGA  500

seq1  TAAGAACAAAGTTGGGATGATCAGAGGAGATGGATCTGTTGGGAAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAAAGTTGGGATGATCAGAGGAGATGGATCTGTTGGGAAAGTGC  550

seq1  TTGATGTGCAAAGTTAAGGACCACTGAGGGCGAGGGGGAAGAAGTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGCAAAGTTAAGGACCACTGAGGGCGAGGGGGAAGAAGTCAGGC  600

seq1  ATACTTTCACATGCTTGTAATCCTAGTGCTAGAAGGTAGAGAAAGGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCACATGCTTGTAATCCTAGTGCTAGAAGGTAGAGAAAGGTCTA  650

seq1  TCCCTGGAATTTGCCTGCCAGTAAGCCTAACTGAATCAGGAAATCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAATTTGCCTGCCAGTAAGCCTAACTGAATCAGGAAATCCCAGA  700

seq1  GCCCAGTAAGAGACCCCCAACTCAATAAACAAATAAATAAATAAACAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAAGAGACCCCCAACTCAATAAACAAATAAATAAATAAACAAAC  750

seq1  AAACAAATAAATATAAAAAACAAAAACAAAAAATGTTATTCATACTTAGA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAACAAATAAATATAAAAAACAAAAAC-AAAAATGTTATTCATACTTAGA  799

seq1  TGCTCATATATTTAAAACCTTGAAATGGAAGAAGCTGGATAGTCCAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATATTTAAAACCTTGAAATGGAAGAAGCTGGATAGTCCAGAGA  849

seq1  CCTAGTATCGAACCCACCTTGACTGGAAAAAGAAGTCAATGAAATGATTC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTAGTATCGAACCCACCTTGACTGGGAAAAGAAGTCAATGAAATGATTC  899

seq1  CAAATGATACTCCGCTATATCCATAGATTGGTGTCTACCCCAATTGTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAATGATACTCCGCTATATCCATAGATTGGTGTCTACCCCAAATGTCAT  949

seq1  CAGAGAGTCTTCATCCAGAACCTAAAGGAAACAGATGCAGACACTTGCAT  1000
      |||||||||||||||||||| ||||  |||||||||||||||||||||||
seq2  CAGAGAGTCTTCATCCAGAATCTAA--GAAACAGATGCAGACACTTGCAT  997

seq1  TAGGTGGAGATCAGGGAATCCTGTGGAAAATGGGGAGAAAGTATTAGAGA  1050
      |||   ||||||| ||||| |||| |||||||||||||||||| ||||||
seq2  TAG--TGAGATCA-GGAAT-CTGT-GAAAATGGGGAGAAAGTA-TAGAGA  1041

seq1  AGCCAGAGGAGTCAAAGACACCACATGAAAATCCA  1085
         |||| ||||| |||||||| |||| |||||||
seq2  --GCAGA-GAGTC-AAGACACCCCATG-AAATCCA  1071


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