BAC Information

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BAC

Clone NameB6Ng01-323L07
Chromosome16 (Build37)
Map Location 89,542,852 - 89,686,244
singlet/doubletdoublet
Overlap genenone
Upstream geneCldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L07.bB6Ng01-323L07.g
ACCGA112217GA112218
length116879
definitionB6Ng01-323L07.b B6Ng01-323L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,686,129 - 89,686,244)(89,542,852 - 89,543,727)
sequence
agtcattcatctatatcaatgtagtgaattgaatgatagtttctccaaaa
gacatgtccatatcataacacacatcttcttgctttccccttccttcctt
ccttccttccttcctt
gaattcacacatccacactgaggaaccctgaccccagttggttttgattg
gtaaataaagatgcttgtggccaaagactgggcagggagacagaggaggg
acattagggtgcccgggcaaaagactgaaaaagagcaggaagagaatcag
gcaccatgctggaaaaggagtagatgccacgcctgagagatgccagagaa
catatctgtcatgtaagtgctggggaactcagcccaaaagggctgcaggt
ctgggtcgaggcagccaagatggaatgtaggttttaataagtaataactt
agggatattggatgggagggtgttagccacgtggagatttggaagtaacc
ctgcctttgagctgtttaaggaatattaaaatataaaaggtgtgtgtgtg
tatgtgcgtgtgcctttcattcgagaacccagaacattggggcaggaagc
gaggagtgctaccactgccactgccgctgccaccgccaccgccaccgcca
gcacttctgccactgccacagccacggccagggtcgatttgagtaggatt
tattgggaaatgctataattaccaaagtaaagagtcgatagataatagtg
aataaaggtggagagatatcatatcagttagaaatctagcgtaactcaaa
gcagacaatcaaaactacatcagtggggtagctcctggaagcccaggata
gagaaaccagaagcggtgaattgtgttcagtcctctgaccttcactatct
agctctgggtgcaccctggatcttgaggagatttgcatgacgccaggaac
catccaacttctccaagggggcctgtggaaggccccagaaatatcaagtt
tgacccctccagcaccaacctctttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89686129_89686244
seq2: B6Ng01-323L07.b_50_165 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGGGAAAGCAAGAAGATGTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGGGAAAGCAAGAAGATGTGTGTT  50

seq1  ATGATATGGACATGTCTTTTGGAGAAACTATCATTCAATTCACTACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGGACATGTCTTTTGGAGAAACTATCATTCAATTCACTACATTG  100

seq1  ATATAGATGAATGACT  116
      ||||||||||||||||
seq2  ATATAGATGAATGACT  116

seq1: chr16_89542852_89543727
seq2: B6Ng01-323L07.g_67_945

seq1  GAATTCACACATCCACACTGAGGAACCCTGACCCCAGTTGGTTTTGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATCCACACTGAGGAACCCTGACCCCAGTTGGTTTTGATTG  50

seq1  GTAAATAAAGATGCTTGTGGCCAAAGACTGGGCAGGGAGACAGAGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAGATGCTTGTGGCCAAAGACTGGGCAGGGAGACAGAGGAGGG  100

seq1  ACATTAGGGTGCCCGGGCAAAAGACTGAAAAAGAGCAGGAAGAGAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGGTGCCCGGGCAAAAGACTGAAAAAGAGCAGGAAGAGAATCAG  150

seq1  GCACCATGCTGGAAAAGGAGTAGATGCCACGCCTGAGAGATGCCAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGCTGGAAAAGGAGTAGATGCCACGCCTGAGAGATGCCAGAGAA  200

seq1  CATATCTGTCATGTAAGTGCTGGGGAACTCAGCCCAAAAGGGCTGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTCATGTAAGTGCTGGGGAACTCAGCCCAAAAGGGCTGCAGGT  250

seq1  CTGGGTCGAGGCAGCCAAGATGGAATGTAGGTTTTAATAAGTAATAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCGAGGCAGCCAAGATGGAATGTAGGTTTTAATAAGTAATAACTT  300

seq1  AGGGATATTGGATGGGAGGGTGTTAGCCACGTGGAGATTTGGAAGTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTGGATGGGAGGGTGTTAGCCACGTGGAGATTTGGAAGTAACC  350

seq1  CTGCCTTTGAGCTGTTTAAGGAATATTAAAATATAAAAGGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTGAGCTGTTTAAGGAATATTAAAATATAAAAGGTGTGTGTGTG  400

seq1  TATGTGCGTGTGCCTTTCATTCGAGAACCCAGAACATTGGGGCAGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCGTGTGCCTTTCATTCGAGAACCCAGAACATTGGGGCAGGAAGC  450

seq1  GAGGAGTGCTACCACTGCCACTGCCGCTGCCACCGCCACCGCCACCGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGCTACCACTGCCACTGCCGCTGCCACCGCCACCGCCACCGCCA  500

seq1  GCACTTCTGCCACTGCCACAGCCACGGCCAGGGTCGATTTGAGTAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTGCCACTGCCACAGCCACGGCCAGGGTCGATTTGAGTAGGATT  550

seq1  TATTGGGAAATGCTATAATTACCAAAGTAAAGAGTCGATAGATAATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGAAATGCTATAATTACCAAAGTAAAGAGTCGATAGATAATAGTG  600

seq1  AATAAAGGTGGAGAGATATCATATCAGTTAGAAATCTAGCGTAACTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTGGAGAGATATCATATCAGTTAGAAATCTAGCGTAACTCAAA  650

seq1  GCAGACAATCAAAACTACATCAGTGGGGTAGCTCCTGGAAG-CCAGGATA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAGACAATCAAAACTACATCAGTGGGGTAGCTCCTGGAAGCCCAGGATA  700

seq1  GAGAAACCAGAAGCGGTGAATTGTGTTCAGTCCTCTGACCTTCACTATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCAGAAGCGGTGAATTGTGTTCAGTCCTCTGACCTTCACTATCT  750

seq1  AGCTCTGGGTGCACCCTGGATCTTGAGGAGATTTGCATGACGCCAGG-AC  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCTCTGGGTGCACCCTGGATCTTGAGGAGATTTGCATGACGCCAGGAAC  800

seq1  CATCCAACCTCTCCAAGGGGGCCTGTGG-AGGCCCCAGAAATATCCAGTT  847
      |||||||| ||||||||||||||||||| |||||||||||||||| ||||
seq2  CATCCAACTTCTCCAAGGGGGCCTGTGGAAGGCCCCAGAAATATCAAGTT  850

seq1  TGAACCCCTCCAGCACCAACCTC-TTGCCA  876
      || |||||||||||||||||||| ||||||
seq2  TG-ACCCCTCCAGCACCAACCTCTTTGCCA  879