BAC Information

Click to search

BAC

Clone NameB6Ng01-323O11
Chromosome16 (Build37)
Map Location 51,580,380 - 51,673,883
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O11.bB6Ng01-323O11.g
ACCGA112357GA112358
length1,2021,172
definitionB6Ng01-323O11.b B6Ng01-323O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,580,380 - 51,581,590)(51,672,705 - 51,673,883)
sequence
gaattctcagaaactaagggaattaaataatgaaaaataccatttataga
atctagttaattcctaccccaaggaaacacataggctataattaaagaag
agttggaggaatcatatttcatatattcttgctaaacttgtatcttttct
tttgcacaatactgatattttttcaatcctcagatattgataacatgatc
tgtaaggggaaatactatccctgttatgagccttttgatatttgaaagat
tttattctttaaaattcctatcttcagatgcaaaggctcacaggagccaa
gaagactcccctgactatctgcacacaacacagctggaattcagttatca
gattagttttccaatcatgagagctggccaagagtaattcctagagcatg
cttctaaaggcaggtgccttggcaaagacagagcagaaacagcaggggca
gaagaggtgaaaaatgactgccaaaatcctggctgggatgctccactatt
tcaagaagaccagcctcagatagagaaaatggagcagagcctagacctga
agtgagtgcttgagcagagtcatattttcagctgataggcaagctactgc
ttttcatcttagctccaggatttgtgacgagcaagatcccatgaagtttt
gtgaagtattctgcaatttattagtaatggttcagcagtcgagtgtaaag
gttgttagaggcaggttcaccagctcactctcatccctactgctgttcta
tgtgtgtcctcttacagagaggtggatgtgaaaagggccacagaaagcac
cacaaaatactcactgacactgagcagttatgtgactgtttgctctgcaa
taacatgcttgttataagctcataatactccagggtaaaggtagtaataa
ctgatgagtactttctatcagcgaagtatctgcacaaaaaaaacacacag
acaagtcacatggtcttacacgcgttcgcaaccggccaggaagacgcagc
aaaccggaatcttctgcggcaaactttattgctacatcttcaggagcaga
gtgcagaagagcaaaggctttattgcttacatctttaggagcaaagcgcc
agagcgcctaaagattgcaagagtgcctagcagagcagagagcgtatggt
aaccgtcttcagagaaatattctccgcctagagacgtatttaatctccct
ga
gaattcaatccgcagatcatagagtggatcatagagtggagagaactctc
tctctctctctctctccctctctctctctctctctctcatacacacacaa
acacacacacacaaatatttatatatgcacactcacatacacataaaata
aaattatttataaatttataaagtttttaaaatgggttattggaaaacaa
tacaattgtaaatcaaaacgtaagtcccaattttctcttttgacggtcag
atttaacagacaacattatgtcctgccaaactgccataaacatttactct
aaagtcctaagcagcctcctactgatgagacatcaagtgtgtgagccagg
acaatatttgggcctgcattcggcaaagcactgtggcaaagccagcagtc
atttgacagctgctgaggagtgcccaagcaaatgaaccaaccagaaaaaa
aaaaaaaaaagtttgatatttgaggaaatttgttggacaaagaaatagac
ttgaggatcattgttttgcaaagacgagaatagttgaccctctcccttac
ttttccattttagcttttgcttaaaaaatattctgagtgaatgtagttaa
tcctttttttctgtacatttttatttgtaataatatttaagccttgtgaa
tataatccccataggaaatcattcatatttctctgcttgtggtaattatc
ataaggcatctctagttatctcctatggcttgattttaatataaggcagt
aggtagatcttgtagggagcctaccgtagagggttttagttagttggcca
acagcagattgtaactgcagggctgatgctgtcattcattactttgatat
gatgacctacacattctttaaggtcatgggcaaatttaattttctaaaat
tatacaaatgtatgaaatcaataaaaagaattggagaggagatcaaaata
aatttattaataaagacttcaaattgggttcataccaattttccaaacat
taggcagacctgaactggcaaaacttgagtatcatattattataggaaca
gaatgtcagtgcaagtaagttgtactgttgagagctgatgttatagggat
taaagagtaattcatatgaattccaagctgctatcctgggattctctgcg
attatttctttcaaggtaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51580380_51581590
seq2: B6Ng01-323O11.b_49_1250

seq1  GAATTCTCAGAAACTAAGGGAATTAAATAATGAAAAATACCATTTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAACTAAGGGAATTAAATAATGAAAAATACCATTTATAGA  50

seq1  ATCTAGTTAATTCCTACCCCAAGGAAACACATAGGCTATAATTAAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTAATTCCTACCCCAAGGAAACACATAGGCTATAATTAAAGAAG  100

seq1  AGTTGGAGGAATCATATTTCATATATTCTTGCTAAACTTGTATCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGAATCATATTTCATATATTCTTGCTAAACTTGTATCTTTTCT  150

seq1  TTTGCACAATACTGATATTTTTTCAATCCTCAGATATTGATAACATGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAATACTGATATTTTTTCAATCCTCAGATATTGATAACATGATC  200

seq1  TGTAAGGGGAAATACTATCCCTGTTATGAGCCTTTTGATATTTGAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGGAAATACTATCCCTGTTATGAGCCTTTTGATATTTGAAAGAT  250

seq1  TTTATTCTTTAAAATTCCTATCTTCAGATGCAAAGGCTCACAGGAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTAAAATTCCTATCTTCAGATGCAAAGGCTCACAGGAGCCAA  300

seq1  GAAGACTCCCCTGACTATCTGCACACAACACAGCTGGAATTCAGTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCCCCTGACTATCTGCACACAACACAGCTGGAATTCAGTTATCA  350

seq1  GATTAGTTTTCCAATCATGAGAGCTGGCCAAGAGTAATTCCTAGAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTTCCAATCATGAGAGCTGGCCAAGAGTAATTCCTAGAGCATG  400

seq1  CTTCTAAAGGCAGGTGCCTTGGCAAAGACAGAGCAGAAACAGCAGGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAGGCAGGTGCCTTGGCAAAGACAGAGCAGAAACAGCAGGGGCA  450

seq1  GAAGAGGTGAAAAATGACTGCCAAAATCCTGGCTGGGATGCTCCACTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGAAAAATGACTGCCAAAATCCTGGCTGGGATGCTCCACTATT  500

seq1  TCAAGAAGACCAGCCTCAGATAGAGAAAATGGAGCAGAGCCTAGACCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGACCAGCCTCAGATAGAGAAAATGGAGCAGAGCCTAGACCTGA  550

seq1  AGTGAGTGCTTGAGCAGAGTCATATTTTCAGCTGATAGGCAAGCTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGCTTGAGCAGAGTCATATTTTCAGCTGATAGGCAAGCTACTGC  600

seq1  TTTTCATCTTAGCTCCAGGATTTGTGACGAGCAAGATCCCATGAAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTTAGCTCCAGGATTTGTGACGAGCAAGATCCCATGAAGTTTT  650

seq1  GTGAAGTATTCTGCAATTTATTAGTAATGGTTCAGCAGTCGAGTGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTATTCTGCAATTTATTAGTAATGGTTCAGCAGTCGAGTGTAAAG  700

seq1  GTTGTTAGAGGCAGGTTCACCAGCTCACTCTCATCCCTACTGCTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGAGGCAGGTTCACCAGCTCACTCTCATCCCTACTGCTGTTCTA  750

seq1  TGTGTGTCCTCTTACAGAGAGGTGGATGTGAAAAGGGCCACAGAAAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCTCTTACAGAGAGGTGGATGTGAAAAGGGCCACAGAAAGCAC  800

seq1  CACAAAATACTCACTGACACTGAGCAGTTATGTGACTGTTTGCTCTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATACTCACTGACACTGAGCAGTTATGTGACTGTTTGCTCTGCAA  850

seq1  TAACATGCTTGTTATAAGCTCATAATACTCCAGGGTAAAGGTAGTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCTTGTTATAAGCTCATAATACTCCAGGGTAAAGGTAGTAATAA  900

seq1  CTGATGAGTACTTTCTATCAGCGAAGTATCTGCACAAAAAAAACACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGTACTTTCTATCAGCGAAGTATCTGCACAAAAAAAACACACAG  950

seq1  ACAAGTCACATGGTCTTACACGCGTTCGCAACCGGCCAGGAAGAACGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAAGTCACATGGTCTTACACGCGTTCGCAACCGGCCAGGAAG-ACGCAG  999

seq1  CAAACCGGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGC  1050
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CAAACCGGAATCTTCTGCGGC-AAACTTTATTGC-TACATCTTCAGGAGC  1047

seq1  AAGAGTGCAAGAGAGCAAAAGCTTTATTGCTTACATCTTTAGGAGCCAAA  1100
       ||||||||  |||||||| ||||||||||||||||||||||||| ||||
seq2  -AGAGTGCAGAAGAGCAAAGGCTTTATTGCTTACATCTTTAGGAG-CAAA  1095

seq1  GCGCAAGAGCGC---TAGAGTGCAAGAGTGCAGAGCAAGAGCAAGAGAGC  1147
      |||| |||||||    ||| |||||||||||  ||| ||||| |||||||
seq2  GCGCCAGAGCGCCTAAAGATTGCAAGAGTGCCTAGC-AGAGC-AGAGAGC  1143

seq1  GAATGGTGAAACCCCGTCCCTTTTCAGGAGAATTATTCTCCGCCTAG-GA  1196
      | ||||| |    |||||    |||| ||||| |||||||||||||| ||
seq2  GTATGGTAA----CCGTC----TTCA-GAGAAATATTCTCCGCCTAGAGA  1184

seq1  CGTATT---ACTCCCTGA  1211
      ||||||    ||||||||
seq2  CGTATTTAATCTCCCTGA  1202

seq1: chr16_51672705_51673883
seq2: B6Ng01-323O11.g_66_1237 (reverse)

seq1  CTCTTA-CTTGAAAGAAATAATCAAAGAAGAATCCACAGGAAATAAACAA  49
      |||||| ||||||||||||||||  || ||||||| |||||    | || 
seq2  CTCTTACCTTGAAAGAAATAATCGCAG-AGAATCC-CAGGA---TAGCAG  45

seq1  CTATGAGAATCATTATGAATTACTTCTTTAATTCACTAT-ACATCAGCTC  98
      || || ||||   |||||||||| ||||||| || |||| ||||||||||
seq2  CT-TG-GAATTCATATGAATTAC-TCTTTAA-TCCCTATAACATCAGCTC  91

seq1  TCACAGGTACCACTTAC-TGCACTGACATTTCTG-TCCTATAATAATAAT  146
      |||   |||| |||||| |||||||||| ||||| |||||||||||||  
seq2  TCAACAGTACAACTTACTTGCACTGACA-TTCTGTTCCTATAATAATA--  138

seq1  TGATACTC-AGTTTTGCCAGTTCAGGGTCTGCCTATGTTTTGGAAAAATG  195
      |||||||| ||||||||||||||| ||||||||||   ||||||||| ||
seq2  TGATACTCAAGTTTTGCCAGTTCA-GGTCTGCCTAATGTTTGGAAAATTG  187

seq1  GTATTGAACCAATTTGAAGTCTTTATTAATAAATTTATTTTGATCTCCTC  245
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACCCAATTTGAAGTCTTTATTAATAAATTTATTTTGATCTCCTC  237

seq1  TCCATTTCTTTTTATTGATTTCATACATTTGTATAATTTTAG-AAATTAA  294
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCAATTCTTTTTATTGATTTCATACATTTGTATAATTTTAGAAAATTAA  287

seq1  ATTTGCCCATGACCTTAAAGAATGTGTAGGTCATCATATCAAAGTAATGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCATGACCTTAAAGAATGTGTAGGTCATCATATCAAAGTAATGA  337

seq1  ATGACAGCATCAGCCCTGCAGTTACAATCTGCTGTTGGCCAACTAACTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCATCAGCCCTGCAGTTACAATCTGCTGTTGGCCAACTAACTAA  387

seq1  AACCCTCTACGGTAGGCTCCCTACAAGATCTACCTACTGCCTTATATTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTACGGTAGGCTCCCTACAAGATCTACCTACTGCCTTATATTAA  437

seq1  AATCAAGCCATAGGAGATAACTAGAGATGCCTTATGATAATTACCACAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCCATAGGAGATAACTAGAGATGCCTTATGATAATTACCACAAG  487

seq1  CAGAGAAATATGAATGATTTCCTATGGGGATTATATTCACAAGGCTTAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATATGAATGATTTCCTATGGGGATTATATTCACAAGGCTTAAA  537

seq1  TATTATTACAAATAAAAATGTACAGAAAAAAAGGATTAACTACATTCACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACAAATAAAAATGTACAGAAAAAAAGGATTAACTACATTCACT  587

seq1  CAGAATATTTTTTAAGCAAAAGCTAAAATGGAAAAGTAAGGGAGAGGGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATTTTTTAAGCAAAAGCTAAAATGGAAAAGTAAGGGAGAGGGTC  637

seq1  AACTATTCTCGTCTTTGCAAAACAATGATCCTCAAGTCTATTTCTTTGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCTCGTCTTTGCAAAACAATGATCCTCAAGTCTATTTCTTTGTC  687

seq1  CAACAAATTTCCTCAAATATCAAACTTTTTTTTTTTTTTTTCTGGTTGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATTTCCTCAAATATCAAACTTTTTTTTTTTTTTTTCTGGTTGGT  737

seq1  TCATTTGCTTGGGCACTCCTCAGCAGCTGTCAAATGACTGCTGGCTTTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCTTGGGCACTCCTCAGCAGCTGTCAAATGACTGCTGGCTTTGC  787

seq1  CACAGTGCTTTGCCGAATGCAGGCCCAAATATTGTCCTGGCTCACACACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTTTGCCGAATGCAGGCCCAAATATTGTCCTGGCTCACACACT  837

seq1  TGATGTCTCATCAGTAGGAGGCTGCTTAGGACTTTAGAGTAAATGTTTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTCATCAGTAGGAGGCTGCTTAGGACTTTAGAGTAAATGTTTAT  887

seq1  GGCAGTTTGGCAGGACATAATGTTGTCTGTTAAATCTGACCGTCAAAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTTGGCAGGACATAATGTTGTCTGTTAAATCTGACCGTCAAAAGA  937

seq1  GAAAATTGGGACTTACGTTTTGATTTACAATTGTATTGTTTTCCAATAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGGACTTACGTTTTGATTTACAATTGTATTGTTTTCCAATAAC  987

seq1  CCATTTTAAAAACTTTATAAATTTATAAATAATTTTATTTTATGTGTATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAAAAACTTTATAAATTTATAAATAATTTTATTTTATGTGTATG  1037

seq1  TGAGTGTGCATATATAAATATTTGTGTGTGTGTGTTTGTGTGTGTATGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGCATATATAAATATTTGTGTGTGTGTGTTTGTGTGTGTATGAG  1087

seq1  AGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGTTCTCTCCAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGTTCTCTCCAC  1137

seq1  TCTATGATCCACTCTATGATCTGCGGATTGAATTC  1179
      |||||||||||||||||||||||||||||||||||
seq2  TCTATGATCCACTCTATGATCTGCGGATTGAATTC  1172