BAC Information

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BAC

Clone NameB6Ng01-324B14
Chromosome16 (Build37)
Map Location 47,888,231 - 48,019,272
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324B14.bB6Ng01-324B14.g
ACCGA112503GA112504
length6551,148
definitionB6Ng01-324B14.b B6Ng01-324B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,018,618 - 48,019,272)(47,888,231 - 47,889,378)
sequence
gaattctccttgatccagattttacagccaatatatcagcctgcttctgt
tctcagtagcatttccttctgtcccacatgaggacctgtggcacacagca
caaactgcctctcttaacttctctcagtccctgggctttctactctaaat
tgtagcagtgtgttccttctccagggtagatggtcaattgcggagaaaat
catattcccctacctggtactgtttgtagattttggagctcaggttgaat
caatacacttacattatcattgaatctgctaactacaagctgttctagga
taagagttattcattgtctcaaatgcccattttttcaccacactacctgg
ttatagaagaatgaaaaagaaaatgctgatgattgaatatatgaaaaaca
tatgtttctgactataaatttattggtatgttaaattagtctatcatctt
tcctgttttgtagataacattgctcgttccttcctccctccttcctcctg
ttcttccctctcctctctcacccttccttccttccttccttccttccttc
cttccttccttccttcctcccttctttccttctttctttctttctttctt
tctttctttctttctttctttcttccttccttccttccttccttacttcc
ttcct

gaattcattggtaaggtggatattcttcaaatgcaggctgattattctct
taaaaatataacccctaagatgtcttgagaccttgccaattttctttttc
ctttcagtgtggcctgagaagttgttcacagggaagttattatgagagat
cctatccctgcctctgtgtaataaagattggtataagcatatgtgtcaca
cagatgcacaccaaaggctttgcttaggacatctataaagagtctgccct
ctcagttgctcatttgctttatatttaccaagagtcaaatcctctaaatc
tggatgagcagggagctgagaatttactttacaagcaaaatactaaatta
ctagaaacaccctcaacctttctgctgacatagaataatggcattaataa
gatactatctgaagactgcacaggaggtaaaagaaaacatttggtgtgtt
atttatcactcattccctgctttagatgtgagagaacctgggagaataga
gctgataaatgaatcagagtaaagtcttatgcaatagccaactttgttca
gagtaccaaataatttgtactgagggtgaagaagagtcacatgagtagag
tgttcaatcacaaaaggaatataaacatataatagcagttgtaatgaata
atctgaagtgaactcactcctatccactacatatgaaaggggcacaaaac
acaatccaaaaacaattctgtgggtatttttttttaattttttattgctt
ctgtgtgtttcacatcatgcaccccaatcccactcatttccctgtccttt
tgtatctgccttccactcttgcaataccccaaaagaaaacaaaaaatgaa
aataaaaataaatgaataaacaaaattgcaaacaaaacataaaaagaatc
tgtagtgtgtcacaggtgtcccacagtctgccctttgtccatacatcttt
acttaaaatgttcattgcatgagtcattcgtcttacttgaaggcctgtgt
cgtctgctacactaatatactggatcctcactggactctttctgggacat
ctttgttgttacctgtgtcgtggaattctgcagtttcctttacgcctgaa
acagccttttcatggtgtttccgaagttcaatagaatacctgggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48018618_48019272
seq2: B6Ng01-324B14.b_49_703 (reverse)

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGTAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAG  50

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAGGGAGGAAGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAGGGAGGAAGGAAGGAA  100

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGAGAGAGGAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGAGAGAGGAGAGGG  150

seq1  AAGAACAGGAGGAAGGAGGGAGGAAGGAACGAGCAATGTTATCTACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGAGGAAGGAGGGAGGAAGGAACGAGCAATGTTATCTACAAAA  200

seq1  CAGGAAAGATGATAGACTAATTTAACATACCAATAAATTTATAGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGATGATAGACTAATTTAACATACCAATAAATTTATAGTCAGAA  250

seq1  ACATATGTTTTTCATATATTCAATCATCAGCATTTTCTTTTTCATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTTTTTCATATATTCAATCATCAGCATTTTCTTTTTCATTCTTC  300

seq1  TATAACCAGGTAGTGTGGTGAAAAAATGGGCATTTGAGACAATGAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCAGGTAGTGTGGTGAAAAAATGGGCATTTGAGACAATGAATAAC  350

seq1  TCTTATCCTAGAACAGCTTGTAGTTAGCAGATTCAATGATAATGTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCTAGAACAGCTTGTAGTTAGCAGATTCAATGATAATGTAAGTG  400

seq1  TATTGATTCAACCTGAGCTCCAAAATCTACAAACAGTACCAGGTAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTCAACCTGAGCTCCAAAATCTACAAACAGTACCAGGTAGGGGA  450

seq1  ATATGATTTTCTCCGCAATTGACCATCTACCCTGGAGAAGGAACACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTTCTCCGCAATTGACCATCTACCCTGGAGAAGGAACACACTG  500

seq1  CTACAATTTAGAGTAGAAAGCCCAGGGACTGAGAGAAGTTAAGAGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTTAGAGTAGAAAGCCCAGGGACTGAGAGAAGTTAAGAGAGGCA  550

seq1  GTTTGTGCTGTGTGCCACAGGTCCTCATGTGGGACAGAAGGAAATGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCTGTGTGCCACAGGTCCTCATGTGGGACAGAAGGAAATGCTAC  600

seq1  TGAGAACAGAAGCAGGCTGATATATTGGCTGTAAAATCTGGATCAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAGAAGCAGGCTGATATATTGGCTGTAAAATCTGGATCAAGGAG  650

seq1  AATTC  655
      |||||
seq2  AATTC  655


seq1: chr16_47888231_47889378
seq2: B6Ng01-324B14.g_66_1213

seq1  GAATTCATTGGTAAGGTGGATATTCTTCAAATGCAGGCTGATTATTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTAAGGTGGATATTCTTCAAATGCAGGCTGATTATTCTCT  50

seq1  TAAAAATATAACCCCTAAGATGTCTTGAGACCTTGCCAATTTTCTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAACCCCTAAGATGTCTTGAGACCTTGCCAATTTTCTTTTTC  100

seq1  CTTTCAGTGTGGCCTGAGAAGTTGTTCACAGGGAAGTTATTATGAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTGTGGCCTGAGAAGTTGTTCACAGGGAAGTTATTATGAGAGAT  150

seq1  CCTATCCCTGCCTCTGTGTAATAAAGATTGGTATAAGCATATGTGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCTGCCTCTGTGTAATAAAGATTGGTATAAGCATATGTGTCACA  200

seq1  CAGATGCACACCAAAGGCTTTGCTTAGGACATCTATAAAGAGTCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCACACCAAAGGCTTTGCTTAGGACATCTATAAAGAGTCTGCCCT  250

seq1  CTCAGTTGCTCATTTGCTTTATATTTACCAAGAGTCAAATCCTCTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGCTCATTTGCTTTATATTTACCAAGAGTCAAATCCTCTAAATC  300

seq1  TGGATGAGCAGGGAGCTGAGAATTTACTTTACAAGCAAAATACTAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGCAGGGAGCTGAGAATTTACTTTACAAGCAAAATACTAAATTA  350

seq1  CTAGAAACACCCTCAACCTTTCTGCTGACATAGAATAATGGCATTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACACCCTCAACCTTTCTGCTGACATAGAATAATGGCATTAATAA  400

seq1  GATACTATCTGAAGACTGCACAGGAGGTAAAAGAAAACATTTGGTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATCTGAAGACTGCACAGGAGGTAAAAGAAAACATTTGGTGTGTT  450

seq1  ATTTATCACTCATTCCCTGCTTTAGATGTGAGAGAACCTGGGAGAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCACTCATTCCCTGCTTTAGATGTGAGAGAACCTGGGAGAATAGA  500

seq1  GCTGATAAATGAATCAGAGTAAAGTCTTATGCAATAGCCAACTTTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAAATGAATCAGAGTAAAGTCTTATGCAATAGCCAACTTTGTTCA  550

seq1  GAGTACCAAATAATTTGTACTGAGGGTGAAGAAGAGTCACATGAGTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCAAATAATTTGTACTGAGGGTGAAGAAGAGTCACATGAGTAGAG  600

seq1  TGTTCAATCACAAAAGGAATATAAACATATAATAGCAGTTGTAATGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATCACAAAAGGAATATAAACATATAATAGCAGTTGTAATGAATA  650

seq1  ATCTGAAGTGAACTCACTCCTATCCACTACATATGAAAGGGGCACAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTGAACTCACTCCTATCCACTACATATGAAAGGGGCACAAAAC  700

seq1  ACAATCCAAAAACAATTCTGTGGGTATTTTTTTTTAATTTTTTATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAAAAACAATTCTGTGGGTATTTTTTTTTAATTTTTTATTGCTT  750

seq1  CTGTGTGTTTCACATCATGCACCCCAATCCCACTCATTTCCCTGTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTTCACATCATGCACCCCAATCCCACTCATTTCCCTGTCCTTT  800

seq1  TGTATCTGCCTTCCACTCTTGCAATACCCCAAAAGAAAACAAAAAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGCCTTCCACTCTTGCAATACCCCAAAAGAAAACAAAAAATGAA  850

seq1  AATAAAAATAAATGAATAAACAAAATTGCAAACAAAACATAAAAAGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAAATGAATAAACAAAATTGCAAACAAAACATAAAAAGAATC  900

seq1  TGTAGTGTGTCACAGGGTGTCCCACAGTCTGCCCTTTGTCCATACATCTT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGTCACA-GGTGTCCCACAGTCTGCCCTTTGTCCATACATCTT  949

seq1  TACTTAAAAATGTTCATTGCAATGAGTCATTCGTCTTACTTG-AGGCCTG  999
      ||||| |||||||||||||| ||||||||||||||||||||| |||||||
seq2  TACTT-AAAATGTTCATTGC-ATGAGTCATTCGTCTTACTTGAAGGCCTG  997

seq1  TGTCGTCTGCTACACTAATAATACTGGATCCTCACTGGGACTC-TTCTGG  1048
      ||||||||||||||||||| |||||||||||||||| |||||| ||||||
seq2  TGTCGTCTGCTACACTAAT-ATACTGGATCCTCACT-GGACTCTTTCTGG  1045

seq1  GACATC-TTGTTGTTACCCTGTGTCGTGGAAATTCTGCAGTTTTCCTTAC  1097
      |||||| ||||||||| |||||||||||| ||||||||||||| | ||||
seq2  GACATCTTTGTTGTTA-CCTGTGTCGTGG-AATTCTGCAGTTTCCTTTAC  1093

seq1  G-CTGAAACAGCCCTTTCAT-GTGTTCCAGAAGTTC-ATAG-ATACTGGG  1143
      | ||||||||||| |||||| ||||| | ||||||| |||| ||||  ||
seq2  GCCTGAAACAGCCTTTTCATGGTGTTTCCGAAGTTCAATAGAATACCTGG  1143

seq1  GCAGG  1148
      |||||
seq2  GCAGG  1148


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