BAC Information

Click to search

BAC

Clone NameB6Ng01-324H11
Chromosome16 (Build37)
Map Location 20,221,381 - 20,362,967
singlet/doubletdoublet
Overlap geneYeats2, Map6d1, Parl, EG224044, Abcc5
Upstream geneIgl, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, LOC100043459
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H11.bB6Ng01-324H11.g
ACCGA112773GA112774
length1,1091,181
definitionB6Ng01-324H11.b B6Ng01-324H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,361,860 - 20,362,967)(20,221,381 - 20,222,586)
sequence
gaattcactctgtagaccaggctagcctcaaacttagaagtccacctgcc
tctgcctcccaagtgctgggattaaaggcgtaagccaccaccacccggcc
tgttatgtgatttttggctgttttgtttgtttttaaacatattgcaaaga
taaaaataaggcaaatgaactccaaagagggtgtctttgtgcatgcccag
gcttctgtctagactcaccagctggctgtgtgccacacagtcttctaagg
tgcacagggctgtgctgtctcttacagcacttcctggaagtgttttccct
acttgcttacaggttggactgtccgtgtgttctggttgccagtaacaggc
tgagggtggttcagcggttacacagcttaagacatgtgttactggaaacc
aagagcacaaaagcatggtgcaccagtgtgactcggtgctgtgttctatg
agggtattgggtgtggtgttaagtgcaagacaaccactgaggctggagac
ttcatgctgcatgtgtgggcgctggttggatctgtgtggcggctgcaggt
ttaggaagcgccctctgcctgctcgccctgtactgacacggcttctctct
tcgctcctgtctcttactttcagttaactggactattccagttcaccgtc
agactggcatcggagacagaagcacggttcacttccgtggagaggatcaa
ccactatatcaaggtcaggatgctgcaggcctttctggctccttttggag
ttcttttgttctttctgtcctgaatgtgggtgaggagcctcactttctct
acctgtctcatccccacttctgaggctcagcagtctcaaccttaagagtt
cctgaagaactggctgctttctagagttaaacgtgtcacactcagaaacc
ttgtttttcagttaagcttaatgtaacattgttggggcgggccagaggct
cacatgtcccggtttcgagcctggaaggcatcttggaatctgagagaaga
ggaccctagctggttgagaaataatgtaacccagacattgctagtctgct
caacgtttcaaatttttaatgccggacatgctttataaacgaggggggta
agttccatt
gaattcagattacaatggcacatgcatctataatgccggtgcatctttac
caggaggtgagcggcagccacaagagaattggccagaaacttgtggttag
ccagcctagaacccacaacttagcagatatgggcattaaatctgagtctc
agaaaggtggaagaaaagaactaaccctcaggagttgttttcttacttcc
acatggcatgcagaaaccctcacttacgcacatacatcacacatgcagag
taataaattttttatattattttataaaaggaaatcaaggaacttggaaa
tctactaacaataacttttgttctaaacaatcacttttattcagagtttg
cagttctctgttgtaggtgatgatgccagctgtttttctgcgaagtcctt
ggagcagtattacggctggaacattgggaagaggagagctgctgaggtga
ggttgcttgccggacaggtctgcagcctgcactgaaagtcagatgcacag
tagaggaggacgcttgcgtgttcttcctctatggacaaaaggaggcaaac
ttgcctctttaggtggtagaccattgctcagtcagaaactttgttcttct
ggatcccagatatctcttgaaggcttgtctcctgtaccaggaaaagcatc
ttatattttctttgaaaatcttaaatattttgggattgaatagttagctc
agcagcaagatggctgtgatcacagagaacgtgggttcatttcccagcac
ctgaatagcagttcacaacaatctgtaattgcatttccaggggacctaaa
tgccctcttttggccactttagacatgggggcatgcacgtggtgcacaca
agtacacataaaattaatatttttaaatttgtaaatttcaaaataatact
gaattcagagttttacagagtacttacaacaatgttgccaaatgcagttg
aatctgagaagaagaaaagtgtgtgccgtgtagctgggcaccagcggaag
ctgggtcatccatcgaatttgctttggggaaaatgaaaagtggtcatgac
caggtgaaagccttaaatgcagaacatagaagtctgtgtattgtaaacca
ctaagacgaatagttactcttttataccatgtaacctgtttattggctat
gtgtgccatgtaacacaccactgcaccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20361860_20362967
seq2: B6Ng01-324H11.b_45_1153 (reverse)

seq1  AATGG-ACTTTCCCCCCTCTTTTATAAAGCATGTCCGCCATTAAAAATTT  49
      ||||| |||| |||||||| ||||||||||||||||| ||||||||||||
seq2  AATGGAACTTACCCCCCTCGTTTATAAAGCATGTCCGGCATTAAAAATTT  50

seq1  G-AACCTTGAGCAGACTAGC-ATGTCTTGGTTTCATTATTTCTCAACCAG  97
      | ||| |||||||||||||| |||||| |||| |||||||||||||||||
seq2  GAAACGTTGAGCAGACTAGCAATGTCTGGGTTACATTATTTCTCAACCAG  100

seq1  CCTAGGTTCCCTCTTCTCTTCCAGATTCCAAGATGCCTTCCAGGCTCGAA  147
       ||||| | ||||||||||  |||||||||||||||||||||||||||||
seq2  -CTAGGGT-CCTCTTCTCT--CAGATTCCAAGATGCCTTCCAGGCTCGAA  146

seq1  ACC-GGACATGTGAGCCTCTGGCCCGCCCCAACAATGTTACATT-AGCTT  195
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCGGGACATGTGAGCCTCTGGCCCGCCCCAACAATGTTACATTAAGCTT  196

seq1  AACTGAAAAACAAGGTTTCTGAGTGTGACACGTTTAACTCTAGAAAGCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAACAAGGTTTCTGAGTGTGACACGTTTAACTCTAGAAAGCAG  246

seq1  CCAGTTCTTCAGGAACTCTTAAGGTTGAGACTGCTGAGCCTCAGAAGTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTCAGGAACTCTTAAGGTTGAGACTGCTGAGCCTCAGAAGTGG  296

seq1  GGATGAGACAGGTAGAGAAAGTGAGGCTCCTCACCCACATTCAGGACAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGACAGGTAGAGAAAGTGAGGCTCCTCACCCACATTCAGGACAGA  346

seq1  AAGAACAAAAGAACTCCAAAAGGAGCCAGAAAGGCCTGCAGCATCCTGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAGAACTCCAAAAGGAGCCAGAAAGGCCTGCAGCATCCTGAC  396

seq1  CTTGATATAGTGGTTGATCCTCTCCACGGAAGTGAACCGTGCTTCTGTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAGTGGTTGATCCTCTCCACGGAAGTGAACCGTGCTTCTGTCT  446

seq1  CCGATGCCAGTCTGACGGTGAACTGGAATAGTCCAGTTAACTGAAAGTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGCCAGTCTGACGGTGAACTGGAATAGTCCAGTTAACTGAAAGTAA  496

seq1  GAGACAGGAGCGAAGAGAGAAGCCGTGTCAGTACAGGGCGAGCAGGCAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGAGCGAAGAGAGAAGCCGTGTCAGTACAGGGCGAGCAGGCAGA  546

seq1  GGGCGCTTCCTAAACCTGCAGCCGCCACACAGATCCAACCAGCGCCCACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTTCCTAAACCTGCAGCCGCCACACAGATCCAACCAGCGCCCACA  596

seq1  CATGCAGCATGAAGTCTCCAGCCTCAGTGGTTGTCTTGCACTTAACACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCATGAAGTCTCCAGCCTCAGTGGTTGTCTTGCACTTAACACCA  646

seq1  CACCCAATACCCTCATAGAACACAGCACCGAGTCACACTGGTGCACCATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAATACCCTCATAGAACACAGCACCGAGTCACACTGGTGCACCATG  696

seq1  CTTTTGTGCTCTTGGTTTCCAGTAACACATGTCTTAAGCTGTGTAACCGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGCTCTTGGTTTCCAGTAACACATGTCTTAAGCTGTGTAACCGC  746

seq1  TGAACCACCCTCAGCCTGTTACTGGCAACCAGAACACACGGACAGTCCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCCTCAGCCTGTTACTGGCAACCAGAACACACGGACAGTCCAA  796

seq1  CCTGTAAGCAAGTAGGGAAAACACTTCCAGGAAGTGCTGTAAGAGACAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCAAGTAGGGAAAACACTTCCAGGAAGTGCTGTAAGAGACAGC  846

seq1  ACAGCCCTGTGCACCTTAGAAGACTGTGTGGCACACAGCCAGCTGGTGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTGTGCACCTTAGAAGACTGTGTGGCACACAGCCAGCTGGTGAG  896

seq1  TCTAGACAGAAGCCTGGGCATGCACAAAGACACCCTCTTTGGAGTTCATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGAAGCCTGGGCATGCACAAAGACACCCTCTTTGGAGTTCATT  946

seq1  TGCCTTATTTTTATCTTTGCAATATGTTTAAAAACAAACAAAACAGCCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATTTTTATCTTTGCAATATGTTTAAAAACAAACAAAACAGCCAA  996

seq1  AAATCACATAACAGGCCGGGTGGTGGTGGCTTACGCCTTTAATCCCAGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATAACAGGCCGGGTGGTGGTGGCTTACGCCTTTAATCCCAGCA  1046

seq1  CTTGGGAGGCAGAGGCAGGTGGACTTCTAAGTTTGAGGCTAGCCTGGTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAGGCAGGTGGACTTCTAAGTTTGAGGCTAGCCTGGTCT  1096

seq1  ACAGAGTGAATTC  1108
      |||||||||||||
seq2  ACAGAGTGAATTC  1109

seq1: chr16_20221381_20222586
seq2: B6Ng01-324H11.g_65_1245

seq1  GAATTCAGATTACAATGGCACATGCATCTATAATGCCGGTGCATCTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTACAATGGCACATGCATCTATAATGCCGGTGCATCTTTAC  50

seq1  CAGGAGGTGAGCGGCAGCCACAAGAGAATTGGCCAGAAACTTGTGGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTGAGCGGCAGCCACAAGAGAATTGGCCAGAAACTTGTGGTTAG  100

seq1  CCAGCCTAGAACCCACAACTTAGCAGATATGGGCATTAAATCTGAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGAACCCACAACTTAGCAGATATGGGCATTAAATCTGAGTCTC  150

seq1  AGAAAGGTGGAAGAAAAGAACTAACCCTCAGGAGTTGTTTTCTTACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGGAAGAAAAGAACTAACCCTCAGGAGTTGTTTTCTTACTTCC  200

seq1  ACATGGCATGCAGAAACCCTCACTTACGCACATACATCACACATGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCATGCAGAAACCCTCACTTACGCACATACATCACACATGCAGAG  250

seq1  TAATAAATTTTTTATATTATTTTATAAAAGGAAATCAAGGAACTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTTTTTATATTATTTTATAAAAGGAAATCAAGGAACTTGGAAA  300

seq1  TCTACTAACAATAACTTTTGTTCTAAACAATCACTTTTATTCAGAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAACAATAACTTTTGTTCTAAACAATCACTTTTATTCAGAGTTTG  350

seq1  CAGTTCTCTGTTGTAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTGTTGTAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTT  400

seq1  GGAGCAGTATTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTATTACGGCTGGAACATTGGGAAGAGGAGAGCTGCTGAGGTGA  450

seq1  GGTTGCTTGCCGGACAGGTCTGCAGCCTGCACTGAAAGTCAGATGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTGCCGGACAGGTCTGCAGCCTGCACTGAAAGTCAGATGCACAG  500

seq1  TAGAGGAGGACGCTTGCGTGTTCTTCCTCTATGGACAAAAGGAGGCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGGACGCTTGCGTGTTCTTCCTCTATGGACAAAAGGAGGCAAAC  550

seq1  TTGCCTCTTTAGGTGGTAGACCATTGCTCAGTCAGAAACTTTGTTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTTTAGGTGGTAGACCATTGCTCAGTCAGAAACTTTGTTCTTCT  600

seq1  GGATCCCAGATATCTCTTGAAGGCTTGTCTCCTGTACCAGGAAAAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAGATATCTCTTGAAGGCTTGTCTCCTGTACCAGGAAAAGCATC  650

seq1  TTATATTTTCTTTGAAAATCTTAAATATTTTGGGATTGAATAGTTAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTCTTTGAAAATCTTAAATATTTTGGGATTGAATAGTTAGCTC  700

seq1  AGCAGCAAGATGGCTGTGATCACAGAGAACGTGGGTTCATTTCCCAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGATGGCTGTGATCACAGAGAACGTGGGTTCATTTCCCAGCAC  750

seq1  CTGAATAGCAGTTCACAACAATCTGTAATTGCATTTCCAGGGGACCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGCAGTTCACAACAATCTGTAATTGCATTTCCAGGGGACCTAAA  800

seq1  TGCCCTCTTTTGGCCACTTTAGACATGGGGGCATGCACGTGGTGCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTTTGGCCACTTTAGACATGGGGGCATGCACGTGGTGCACACA  850

seq1  AGTACACATAAAATTAATATTTTTAAATTTGTAAATTTCAAAATAATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACATAAAATTAATATTTTTAAATTTGTAAATTTCAAAATAATACT  900

seq1  GAATTCAGAGTTTTACAGAGTACTTACAACAATGTTGCCAAATGCAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTTACAGAGTACTTACAACAATGTTGCCAAATGCAGTTG  950

seq1  AATCTTGAG-AGAAG-AAAGTGTGTGCCGTGTAGCTGGGCACCAGCGGAA  998
      |||| |||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AATC-TGAGAAGAAGAAAAGTGTGTGCCGTGTAGCTGGGCACCAGCGGAA  999

seq1  GCTGGGTCATCCATCGAATTTGCTTTGGGGAAAATGAAAAGTTGGTTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||  | ||||
seq2  GCTGGGTCATCCATCGAATTTGCTTTGGGGAAAATGAAAAGT--GGTCAT  1047

seq1  GACCAGGTGAAAAGCCTTAAATGCAG-ACATAGAAGTTTCTGTTGTATTT  1097
      ||||||||| |||||||||||||||| |||||||||  |||| ||||  |
seq2  GACCAGGTG-AAAGCCTTAAATGCAGAACATAGAAG--TCTG-TGTA--T  1091

seq1  TGTAAA-CACTAAGACCGATAGTAACTCTTTTTATTACATGTAAAACTG-  1145
      |||||| |||||||||  ||||| |||| ||||||  ||||| || ||| 
seq2  TGTAAACCACTAAGACGAATAGTTACTC-TTTTATACCATGT-AACCTGT  1139

seq1  TTATTGTGTATGTGTG-CATGTACACACATGCACATTCTCACATGCATGC  1194
      ||||||  |||||||| |||||| |||||                    |
seq2  TTATTGGCTATGTGTGCCATGTA-ACACA--------------------C  1168

seq1  CACTGCA-CATTT  1206
      ||||||| |||||
seq2  CACTGCACCATTT  1181