BAC Information

Click to search

BAC

Clone NameB6Ng01-324H16
Chromosome16 (Build37)
Map Location 53,007,194 - 53,008,267
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam, LOC100043430, LOC667895
Downstream geneLOC433027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H16.bB6Ng01-324H16.g
ACCGA112783GA112784
length1,0731,187
definitionB6Ng01-324H16.b B6Ng01-324H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattcatgacagatttcttatcacttccgatcctcacactgatg
aaactgccaccgagaaaagtcaagaatatattcaattcattacttttagt
tgaataggacaaccatctgcgttggttgcagttttcatcaatgtgcattt
attaaaggaaaaatgctcaaataaatgtatgaatggttacaaacatgatt
tagtcaatgaagagcctcatggaatttctccttggtatgcttacagagca
aataattcattcttcctattattccaaccagtagcttcttgtaaactact
ataatgatgtaacttcaatattttaaactaagattattgcaatgacaatt
tgctattagctgtatagtggatcacctcattcagtttctcccagccatat
atatatataatagtatgacatataaggatgctcccattagactctttgaa
atatgtatacaaagctgtatatagagttctttaacaatcttatagtgata
tttcttttagtaattattaactacagagcaataatttcttaaagatactc
tttttgattctgtaatataaccatagctacaacctccttattactagtgc
tttatgaattattatgggcatcatctaaacccatcatcattttttttctc
aatacaaatttctctacttttccttagagcataatttgatattctgaatt
agttttactattgtcttaggaaattatcattatactataatgtgagtatt
tgacatgtgaaagtttaatatgagaaaggttcacgatgcagcttaggagc
aaaatgtttgctttgtgtatgctagggattttattttcagaataaagact
cctgaaattgacattttggctgtcttatgtttttagagttccatatcaaa
tttaaagttgttttatttcaatttatataaatatgtgtactaggattttg
ataggaattgtgttgaatctgctgattccttatgattaatcctaaaccca
atgatcttgaaatgcttttttttcctttaatttcaagtgcctgcttcatc
atcatagtattttctttttcagt

gaattctcacctgaggaataccgaatggcagagaaggacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaactggtaaaaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gatttctactcagctattaaaaaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgaatgaggtaacacattcacaaa
ggaactcacaaaatatgtactcactgattagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagccaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcaaccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactctgccagggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggagtagctagagaaagtagcaaagagctaaagggatctgcaacccta
tatgtggaacaacattatgaactaaccagtacccgagctctgactctagc
tgcatatgttatcaaaggatgactagtcgtcatcacctggaaaagaagag
gcccatgacatgccaacctttatatgcctagtacaggtaacgtcagtgca
aaggggaattggggttggcttaggcaaatgtgacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53007194_53008267
seq2: B6Ng01-324H16.b_50_1122

seq1  GAATTCTATTCATGACAGATTTCTTATCACTTCCGATCCTCACACTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCATGACAGATTTCTTATCACTTCCGATCCTCACACTGATG  50

seq1  AAACTGCCACCGAGAAAAGTCAAGAATATATTCAATTCATTACTTTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCACCGAGAAAAGTCAAGAATATATTCAATTCATTACTTTTAGT  100

seq1  TGAATAGGACAACCATCTGCGTTGGTTGCAGTTTTCATCAATGTGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGACAACCATCTGCGTTGGTTGCAGTTTTCATCAATGTGCATTT  150

seq1  ATTAAAGGAAAAATGCTCAAATAAATGTATGAATGGTTACAAACATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGAAAAATGCTCAAATAAATGTATGAATGGTTACAAACATGATT  200

seq1  TAGTCAATGAAGAGCCTCATGGAATTTCTCCTTGGTATGCTTACAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATGAAGAGCCTCATGGAATTTCTCCTTGGTATGCTTACAGAGCA  250

seq1  AATAATTCATTCTTCCTATTATTCCAACCAGTAGCTTCTTGTAAACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCATTCTTCCTATTATTCCAACCAGTAGCTTCTTGTAAACTACT  300

seq1  ATAATGATGTAACTTCAATATTTTAAACTAAGATTATTGCAATGACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGTAACTTCAATATTTTAAACTAAGATTATTGCAATGACAATT  350

seq1  TGCTATTAGCTGTATAGTGGATCACCTCATTCAGTTTCTCCCAGCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAGCTGTATAGTGGATCACCTCATTCAGTTTCTCCCAGCCATAT  400

seq1  ATATATATAATAGTATGACATATAAGGATGCTCCCATTAGACTCTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAATAGTATGACATATAAGGATGCTCCCATTAGACTCTTTGAA  450

seq1  ATATGTATACAAAGCTGTATATAGAGTTCTTTAACAATCTTATAGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATACAAAGCTGTATATAGAGTTCTTTAACAATCTTATAGTGATA  500

seq1  TTTCTTTTAGTAATTATTAACTACAGAGCAATAATTTCTTAAAGATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAGTAATTATTAACTACAGAGCAATAATTTCTTAAAGATACTC  550

seq1  TTTTTGATTCTGTAATATAACCATAGCTACAACCTCCTTATTACTAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATTCTGTAATATAACCATAGCTACAACCTCCTTATTACTAGTGC  600

seq1  TTTATGAATTATTATGGGCATCATCTAAACCCATCATCATTTTTTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATTATTATGGGCATCATCTAAACCCATCATCATTTTTTTTCTC  650

seq1  AATACAAATTTCTCTACTTTTCCTTAGAGCATAATTTGATATTCTGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATTTCTCTACTTTTCCTTAGAGCATAATTTGATATTCTGAATT  700

seq1  AGTTTTACTATTGTCTTAGGAAATTATCATTATACTATAATGTGAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACTATTGTCTTAGGAAATTATCATTATACTATAATGTGAGTATT  750

seq1  TGACATGTGAAAGTTTAATATGAGAAAGGTTCAGGATGCAGCTTAGGAGC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGACATGTGAAAGTTTAATATGAGAAAGGTTCACGATGCAGCTTAGGAGC  800

seq1  AAAATGTTTGCTTTGTGTATGCTAGGGATTTTATTTTCAGAATAAAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTGCTTTGTGTATGCTAGGGATTTTATTTTCAGAATAAAGACT  850

seq1  CCTGAAATTGACATTTTGGCTGTCTTATGTTTTTAGAGTTCCATATCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATTGACATTTTGGCTGTCTTATGTTTTTAGAGTTCCATATCAAA  900

seq1  TTTAAAGTTGTTTTATTTCAATTTATATAAATATGTGTACTAGGATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTGTTTTATTTCAATTTATATAAATATGTGTACTAGGATTTTG  950

seq1  ATAGGAATTGTGTTGAATCTGCTGATTCCTTATGATTAATCCTAAAACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGGAATTGTGTTGAATCTGCTGATTCCTTATGATTAATCCT-AAACCC  999

seq1  AATGATCTTGAAATGCTTTTTTTCCTTTTAATTTCAAGTGCCTGCTTCAT  1050
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  AATGATCTTGAAATGCTTTTTTTTCCTTTAATTTCAAGTGCCTGCTTCAT  1049

seq1  CATTCAATAGTATTT--CTTTTCAGT  1074
      |||   |||||||||   ||||||||
seq2  CAT--CATAGTATTTTCTTTTTCAGT  1073


| Home | SequenceCutter | Blast | Download |