BAC Information

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BAC

Clone NameB6Ng01-324O02
Chromosome16 (Build37)
Map Location 17,039,354 - 17,197,775
singlet/doubletdoublet
Overlap geneMapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324O02.bB6Ng01-324O02.g
ACCGA113084GA113085
length9231,105
definitionB6Ng01-324O02.b B6Ng01-324O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,196,865 - 17,197,775)(17,039,354 - 17,040,467)
sequence
gaattcaaggctgcataatgaatttgaagccagtttgggctccatgagct
cttgtaacaaacaaacaaacaaacaaacactactggttgatcaacagtat
tccagtactttataaaggaatttcctgtggtgaaaaatggaaagttttat
tgtgtttgttgtttttattattattgtttttttttttttttttttttttt
taaagatttatttattatatgtaagtacactgtagctgtcttcagacact
ccagaagagggagtcagttctcgttacggatggttgtgagccaccatgtg
gttgctgggatttgaactccggaccttcggaagagcagtcgggtgctctt
acccactgagccatctcaccagcccctttattattattgttattattatc
aagtatattttggcttttctgaaacagggtcttactatgtagttctggct
gtcctggaactcactatatagaccagactatcctcaaattcacagccatc
tatctatctgcctgcctctgagtcctaagtgctgggaataaaggtgcgca
cctggcttgtgtcattagtgttttgcctgggtgattgtctctgaatcatg
tgccagtgattccctggtgccagtggaagccaaaagtcccagggactgga
gtttgtagacagttgttgttgagccaccatgtgggtacagggaattgaat
ccttgaagactagctaatactcttaaacaatgaaccattttctttagtcc
tttagatatttctttataatggtggattgttaacagatagttataaatac
aacaattaataaaaagcacagtttacatatttatatttacattttttacc
tatatataaatatgggttgaagaagttattttttaggaaaaactaatggt
gaagaagctttaaatttttattt
gaattcaaaacagtcccaaaaggaactagattttcaaggtgtggcttcat
cttgaaaagattcggttggagtggagtagggcatacagtacataactctt
gtgcttactggaagccttgggtgacaggtcccaatgctttcaaaagagag
gaggcactgcctgttaaacagctgtgggttcagagtggcagtctagtctc
taacaccctgtatctcttctgcactgtttgccataatcatttaaattaaa
actaacaattttggaaaggttacttactctttcaggaaagagtttcttcc
tacccacgccatcactcccaccacaagaccccctttagtcagagctacgc
tgccctcctgaagatgaatggagtttactgataactttgttcttcctgca
gttcctgtcctttctttgccaactattcttgggtattcttgattcacagt
acatcagcacgtctgacctactcttgaataaaagcacaaccacaaatgaa
gtaatccacaatattggagtcttccatctatgtcccctgatgaaatagta
caagtgcttgccctggagaatctcctggctgaccttattctacagctctc
actgggtcagaatcttcagttctgtgggcaagagaagctgagaatttttg
tcaggattctagaatctccactgacccctcaggatttatatgtacctggc
tgagctccatgaacttaggaaagatatggtaaaagaagagaggctagaaa
ctgtgttagaatgtaaagaatcagggaggcaaggcattctgcatagagag
agctgcagtgggttaggggatgaggctacagaagtagcatggaaggaggg
gactgtctgtggacactgcagcccaacagccaaaggtggtcttaaggttg
ccagtaatccaattacagcagtttactgcttgagacacagttattccaca
cctgcttaaagcttaaagcttttttccagtgctcttttaatgatataatc
acttatcctgaagattaaaagaatttaaagtagactcatccactactaga
tgcctttacattgattgcactcatttctacttctatcaccattccttctc
catga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17196865_17197775
seq2: B6Ng01-324O02.b_46_968 (reverse)

seq1  AAATAAAAATTT-AAGCTTCTTCA-CATTAGTTTTTCCT-AAAAATAACT  47
      |||||||||||| ||||||||||| |||||||||||||| ||||||||||
seq2  AAATAAAAATTTAAAGCTTCTTCACCATTAGTTTTTCCTAAAAAATAACT  50

seq1  TC-TCAA-CCATATTTATATATAGGT-AAAAATGTAAATATAAATATGTA  94
      || |||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTCAACCCATATTTATATATAGGTAAAAAATGTAAATATAAATATGTA  100

seq1  AACTGTGCTTTTTATT-ATTGTTGTA-TTAT-ACTATCTGTTAACAATCC  141
      |||||||||||||||| ||||||||| |||| ||||||||||||||||||
seq2  AACTGTGCTTTTTATTAATTGTTGTATTTATAACTATCTGTTAACAATCC  150

seq1  ACCATTATAAAGAAATATCTAAAGGACTAAAG-AAATGGTTCATTGTTTA  190
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCATTATAAAGAAATATCTAAAGGACTAAAGAAAATGGTTCATTGTTTA  200

seq1  AGAGTATTAGCTAGTCTTCAAGGATTCAATTCCCTGTACCCACATGGTGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTAGCTAGTCTTCAAGGATTCAATTCCCTGTACCCACATGGTGG  250

seq1  CTCAACAACAACTGTCTAC-AACTCCAGTCCCTGGGACTTTTGGCTTCCA  289
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCAACAACAACTGTCTACAAACTCCAGTCCCTGGGACTTTTGGCTTCCA  300

seq1  CTGGCACCAGGGAATCACTGGCACATGATTCAGAGACAATCACCCAGGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCAGGGAATCACTGGCACATGATTCAGAGACAATCACCCAGGCA  350

seq1  AAACACTAATGACACAAGCCAGGTGCGCACCTTTATTCCCAGCACTTAGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAATGACACAAGCCAGGTGCGCACCTTTATTCCCAGCACTTAGG  400

seq1  ACTCAGAGGCAGGCAGATAGATAGATGGCTGTGAATTTGAGGATAGTCTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGCAGGCAGATAGATAGATGGCTGTGAATTTGAGGATAGTCTG  450

seq1  GTCTATATAGTGAGTTCCAGGACAGCCAGAACTACATAGTAAGACCCTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATAGTGAGTTCCAGGACAGCCAGAACTACATAGTAAGACCCTGT  500

seq1  TTCAGAAAAGCCAAAATATACTTGATAATAATAACAATAATAATAAAGGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAGCCAAAATATACTTGATAATAATAACAATAATAATAAAGGG  550

seq1  GCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGG  600

seq1  TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAA  650

seq1  CGAGAACTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAACTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACT  700

seq1  TACATATAATAAATAAATCTTT-AAAAAAAAAAAAAAAAAAAAAAAACAA  738
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACATATAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAAACAA  750

seq1  TAATAATAAAAACAACAAACACAATAAAACTTTCCATTTTTCACCACAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAAAACAACAAACACAATAAAACTTTCCATTTTTCACCACAGG  800

seq1  AAATTCCTTTATAAAGTACTGGAATACTGTTGATCAACCAGTAGTGTTTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTTATAAAGTACTGGAATACTGTTGATCAACCAGTAGTGTTTG  850

seq1  TTTGTTTGTTTGTTTGTTACAAGAGCTCATGGAGCCCAAACTGGCTTCAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTACAAGAGCTCATGGAGCCCAAACTGGCTTCAA  900

seq1  ATTCATTATGCAGCCTTGAATTC  911
      |||||||||||||||||||||||
seq2  ATTCATTATGCAGCCTTGAATTC  923

seq1: chr16_17039354_17040467
seq2: B6Ng01-324O02.g_68_1172

seq1  GAATTCAAAACAGTCCCAAAAGGAACTAGATTTTCAAGGTGTGGCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAGTCCCAAAAGGAACTAGATTTTCAAGGTGTGGCTTCAT  50

seq1  CTTGAAAAGATTCGGTTGGAGTGGAGTAGGGCATACAGTACATAACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGATTCGGTTGGAGTGGAGTAGGGCATACAGTACATAACTCTT  100

seq1  GTGCTTACTGGAAGCCTTGGGTGACAGGTCCCAATGCTTTCAAAAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACTGGAAGCCTTGGGTGACAGGTCCCAATGCTTTCAAAAGAGAG  150

seq1  GAGGCACTGCCTGTTAAACAGCTGTGGGTTCAGAGTGGCAGTCTAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTGCCTGTTAAACAGCTGTGGGTTCAGAGTGGCAGTCTAGTCTC  200

seq1  TAACACCCTGTATCTCTTCTGCACTGTTTGCCATAATCATTTAAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCCTGTATCTCTTCTGCACTGTTTGCCATAATCATTTAAATTAAA  250

seq1  ACTAACAATTTTGGAAAGGTTACTTACTCTTTCAGGAAAGAGTTTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAATTTTGGAAAGGTTACTTACTCTTTCAGGAAAGAGTTTCTTCC  300

seq1  TACCCACGCCATCACTCCCACCACAAGACCCCCTTTAGTCAGAGCTACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACGCCATCACTCCCACCACAAGACCCCCTTTAGTCAGAGCTACGC  350

seq1  TGCCCTCCTGAAGATGAATGGAGTTTACTGATAACTTTGTTCTTCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCTGAAGATGAATGGAGTTTACTGATAACTTTGTTCTTCCTGCA  400

seq1  GTTCCTGTCCTTTCTTTGCCAACTATTCTTGGGTATTCTTGATTCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCCTTTCTTTGCCAACTATTCTTGGGTATTCTTGATTCACAGT  450

seq1  ACATCAGCACGTCTGACCTACTCTTGAATAAAAGCACAACCACAAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCACGTCTGACCTACTCTTGAATAAAAGCACAACCACAAATGAA  500

seq1  GTAATCCACAATATTGGAGTCTTCCATCTATGTCCCCTGATGAAATAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCACAATATTGGAGTCTTCCATCTATGTCCCCTGATGAAATAGTA  550

seq1  CAAGTGCTTGCCCTGGAGAATCTCCTGGCTGACCTTATTCTACAGCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTTGCCCTGGAGAATCTCCTGGCTGACCTTATTCTACAGCTCTC  600

seq1  ACTGGGTCAGAATCTTCAGTTCTGTGGGCAAGAGAAGCTGAGAATTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCAGAATCTTCAGTTCTGTGGGCAAGAGAAGCTGAGAATTTTTG  650

seq1  TCAGGATTCTAGAATCTCCACTGACCCCTCAGGATTTATATGTACCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTCTAGAATCTCCACTGACCCCTCAGGATTTATATGTACCTGGC  700

seq1  TGAGCTCCATGAACTTAGGAAAGATATGGTAAAAGAAGAGAGGCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCATGAACTTAGGAAAGATATGGTAAAAGAAGAGAGGCTAGAAA  750

seq1  CTGTGTTAGAATGTAAAGAATCAGGGAGGCAAGGCATTCTGCATAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAGAATGTAAAGAATCAGGGAGGCAAGGCATTCTGCATAGAGAG  800

seq1  AGCTGCAGTGGGTTAGGGGATGAGGCTACAGAAGTAGCATGGAAGGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTGGGTTAGGGGATGAGGCTACAGAAGTAGCATGGAAGGAGGG  850

seq1  GACTGTCTGTGGACACTGCAGCCCAACAGCC-AAGGTGGTCCTAAGGTTG  899
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GACTGTCTGTGGACACTGCAGCCCAACAGCCAAAGGTGGTCTTAAGGTTG  900

seq1  CCAGTAATCCAATTACAGCAGTTTACTGCTTGAGACACAGTTATTCCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATCCAATTACAGCAGTTTACTGCTTGAGACACAGTTATTCCACA  950

seq1  CCTGCTTAAAGCTTAAAGCTTTTTTCCAGTGCTCTTTTAATGATAATTAT  999
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  CCTGCTTAAAGCTTAAAGCTTTTTTCCAGTGCTCTTTTAATGAT-ATAAT  999

seq1  CAACTATTCTGAAGAATTAAAAGAATTTTAAAGTAGACTCATCCCACTAC  1049
      ||  ||| |||||| |||||||||| |||||||||||||||| |||||||
seq2  CACTTATCCTGAAG-ATTAAAAGAA-TTTAAAGTAGACTCAT-CCACTAC  1046

seq1  TAGATGCCCTTAACATTTGATTGCACTCATTTTCTACTTCTATCAACCCA  1099
      |||||| |||| ||| ||||||||||||| |||||||||||||||  |||
seq2  TAGATG-CCTTTACA-TTGATTGCACTCA-TTTCTACTTCTATCA--CCA  1091

seq1  TCCCTTCCTCCATGA  1114
      | |||| ||||||||
seq2  TTCCTT-CTCCATGA  1105