BAC Information

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BAC

Clone NameB6Ng01-324O14
Chromosome16 (Build37)
Map Location 87,351,786 - 87,519,101
singlet/doubletdoublet
Overlap geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik
Upstream genenone
Downstream geneLOC435486, ORF63, Bach1, LOC100039901, Grik1, EG622373, Cldn17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324O14.bB6Ng01-324O14.g
ACCGA113102GA113103
length1,1701,046
definitionB6Ng01-324O14.b B6Ng01-324O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,351,786 - 87,352,961)(87,517,896 - 87,519,101)
sequence
gaattcattacaggatagccaaggggtaagacagccaactttgagaggtt
caaagatcagctttggagtgagcttccaaaagtacctcttacaactacac
aactgagcttctggcccattcatggtggtcagaaagccacggaatcaaga
atccactaccaaatgtggaccctgtggacatagatgggcgttggagagag
tcccaaagcaaccagagcagtcaccagagtgactgagcccatcagcatca
aatccatcagaagtctgagccccgcccccaactctcagactagaaggatg
agtacaagcactgggccagggaataggaaactatactgagtagcttgaaa
ggcaggtcaagactccctctcccaaaatcctaaaagctgtgcagggatgt
agctcagtgctaccgtgcttacctagcatgcacaaggtcctgagtttgat
ccccagcaccaaatcaacagggtatggtgggataaacctagagtcccaat
gtagagcaggggaaggcaggagaagcagaagctcaagcttctaagcaaca
cagcaagctcgaggccagtctgggctactgagaccctctctcaaaaataa
taagtaaaaaataaataaaaataggggccaggctgggctactgagaccct
ctctcaaaaataataagtaaaaaaataaataaataaaaataggggccagg
ctgggaatatagtttgggggtaaaatgtgtacatatcatgtctgaaaacc
taggctcaatgcccaggatcaaaaacaaacaaacaaacaaacaaacaaaa
gagtgcagccattcatggtggctcatgcccttaatcacagcacttgggag
gcagaaaggtagaagctaggggggtctctgtgatttagtcagaccagcca
aggctatacaatgataccctgtcatccctcccctgcaaaaaaaaaaaaaa
agggggggacaattagcatgaaagtacatacaagtcacaaaggaagaaat
tccttagatggacattatgacccaggcttaacctcaatcagccattcgga
acaatcaatctaaaaacaaatcttctaattattagatcactcataaatct
gccaccgaagatgttaagagtatacacaagttatggcttaggtttgaagt
gatggcactatcagagaaac
gaattctcaaaaatgtcagtggagcagactcaggttcatctctcagtgat
tacatggtagctcaaaccatttgtagctccagttccaagaaatccaatgc
tctgttctgacctccacgcaccaagcatgcacctgatgcacatgcataca
ggcaggcaaaacacacagaaaataaaatggacaaatctaattaaacaaac
aaacaaacaaaaagccgggcgtggtggcgcacgcctttaatcccagcact
tgggaggcagaggcaggcggatttctgagttcaaggccagcctggtctac
agagtgagttccaggacagccggggctgcacagagaaaccctgtcttgga
aaaaaaaataaaaacaaaaacaaaaaacaaaatacaacaagaacaaaaaa
aaatgcccctcgcaaatttttaaagaaagaccattcgccttccacagctc
ctcagcacaaggtattttattatctctagtccttatatctctagtatgat
caaagctcactgtctacatgcattaaaatattgcaatgaagcctaggatt
ttttataactattacaagcaaatagaaaatgaatgaaacaacaacaacaa
aagcctgaacttacttatcatgattatctctctgaagtttgcattcagcg
cctactcagtgcaggaaactgcatctgccatgttccccaccgcctagagg
gcttggcccagagtcaacacctaacacagatgaggttttgtcttctactt
tctcattggaagctgacaacacaaagctttagccagtatatttatgaagt
gcagaagatatttttcaactttacttagcaggatcaatgttatagatatc
agtttctcaaagcccccacagctcccgatccagctcacatctcactagaa
tcatattgctttccaaaagtttttttctcagccaaaaatacgaagcttcc
actgtggagcccaggggtgaaggtgttcaactgttaacaaaaatcaacac
atttattctctcttaagagcagctgcagttcaggagcactgccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87351786_87352961
seq2: B6Ng01-324O14.b_48_1217

seq1  GAATTCATTACAGGATAGCCAAGGGGTAAGACAGCCAACTTTGAGAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACAGGATAGCCAAGGGGTAAGACAGCCAACTTTGAGAGGTT  50

seq1  CAAAGATCAGCTTTGGAGTGAGCTTCCAAAAGTACCTCTTACAACTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCAGCTTTGGAGTGAGCTTCCAAAAGTACCTCTTACAACTACAC  100

seq1  AACTGAGCTTCTGGCCCATTCATGGTGGTCAGAAAGCCACGGAATCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCTTCTGGCCCATTCATGGTGGTCAGAAAGCCACGGAATCAAGA  150

seq1  ATCCACTACCAAATGTGGACCCTGTGGACATAGATGGGCGTTGGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTACCAAATGTGGACCCTGTGGACATAGATGGGCGTTGGAGAGAG  200

seq1  TCCCAAAGCAACCAGAGCAGTCACCAGAGTGACTGAGCCCATCAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGCAACCAGAGCAGTCACCAGAGTGACTGAGCCCATCAGCATCA  250

seq1  AATCCATCAGAAGTCTGAGCCCCGCCCCCAACTCTCAGACTAGAAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCAGAAGTCTGAGCCCCGCCCCCAACTCTCAGACTAGAAGGATG  300

seq1  AGTACAAGCACTGGGCCAGGGAATAGGAAACTATACTGAGTAGCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGCACTGGGCCAGGGAATAGGAAACTATACTGAGTAGCTTGAAA  350

seq1  GGCAGGTCAAGACTCCCTCTCCCAAAATCCTAAAAGCTGTGCAGGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCAAGACTCCCTCTCCCAAAATCCTAAAAGCTGTGCAGGGATGT  400

seq1  AGCTCAGTGCTACCGTGCTTACCTAGCATGCACAAGGTCCTGAGTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTGCTACCGTGCTTACCTAGCATGCACAAGGTCCTGAGTTTGAT  450

seq1  CCCCAGCACCAAATCAACAGGGTATGGTGGGATAAACCTAGAGTCCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCAAATCAACAGGGTATGGTGGGATAAACCTAGAGTCCCAAT  500

seq1  GTAGAGCAGGGGAAGGCAGGAGAAGCAGAAGCTCAAGCTTCTAAGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAGGGGAAGGCAGGAGAAGCAGAAGCTCAAGCTTCTAAGCAACA  550

seq1  CAGCAAGCTCGAGGCCAGTCTGGGCTACTGAGACCCTCTCTCAAAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCTCGAGGCCAGTCTGGGCTACTGAGACCCTCTCTCAAAAATAA  600

seq1  TAAGTAAAAAATAAATAAAAATAGGGGCCAGGCTGGGCTACTGAGACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAAATAAATAAAAATAGGGGCCAGGCTGGGCTACTGAGACCCT  650

seq1  CTCTCAAAAATAATAAGTAAAAAAATAAATAAATAAAAATAGGGGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAAATAATAAGTAAAAAAATAAATAAATAAAAATAGGGGCCAGG  700

seq1  CTGGGAATATAGTTTGGGGGTAAAATGTGTACATATCATGTCTGAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATATAGTTTGGGGGTAAAATGTGTACATATCATGTCTGAAAACC  750

seq1  TAGGCTCAATGCCCAGGATCAAAAACAAACAAACAAACAAACAAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCAATGCCCAGGATCAAAAACAAACAAACAAACAAACAAACAAAA  800

seq1  GAGTGCAGCCATTCATGGTGGCTCATGCCCTTAATCACAGCACTTGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGCCATTCATGGTGGCTCATGCCCTTAATCACAGCACTTGGGAG  850

seq1  GCAG-AAGGTAGAAGCTAGGGGGGTCTCTGTGATTTAGTCAGACCAGCCA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGTAGAAGCTAGGGGGGTCTCTGTGATTTAGTCAGACCAGCCA  900

seq1  AGGCTATACAATGATACCCTGTCATCCCTCCCCTGCAAAAAAAAAAAAAA  949
      ||||||||||||||||||||||||||||||||||||     |||||||||
seq2  AGGCTATACAATGATACCCTGTCATCCCTCCCCTGC-----AAAAAAAAA  945

seq1  AAAAAAGGGGGGGACAATTAAGCATGAAAGTACATACAAGTCACAAAGGA  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAAAGGGGGGGACAATT-AGCATGAAAGTACATACAAGTCACAAAGGA  994

seq1  AGAAATTCCCTAGATGGACA-TATGAACCCAGGCTTAACCTCAATCAG-C  1047
      ||||||||| |||||||||| |||| |||||||||||||||||||||| |
seq2  AGAAATTCCTTAGATGGACATTATG-ACCCAGGCTTAACCTCAATCAGCC  1043

seq1  AATCGGACCAAATCAATCT-AAAACAAATC-TCTAA-TATTAGATCAACT  1094
      | ||||| | ||||||||| |||||||||| ||||| ||||||||| |||
seq2  ATTCGGAAC-AATCAATCTAAAAACAAATCTTCTAATTATTAGATC-ACT  1091

seq1  CATAAATCTGCCACCAAAAGATGTTAGGAGTATACACAAG-TATGG-TTA  1142
      |||||||||||||||  ||||||||| ||||||||||||| ||||| |||
seq2  CATAAATCTGCCACC-GAAGATGTTAAGAGTATACACAAGTTATGGCTTA  1140

seq1  GTTTGGAGAGTGATGGGGCACTATCCAGAGAAAC  1176
      | || || ||||||  |||||||| |||||||||
seq2  GGTTTGA-AGTGAT--GGCACTAT-CAGAGAAAC  1170

seq1: chr16_87517896_87519101
seq2: B6Ng01-324O14.g_68_1113 (reverse)

seq1  AAAGGCAGTTTTCTGATTCTGGAGATCTGGAGTGGGGTCTGAGAGTCTGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTCTGAATAGACCCTCAGGTCGTGTTGACTTTGCTGGAACAAGAAGCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTTGAAGTAGCAAGACTAAAGTTTGAAGTAACTGATCTTTTCAAGGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATTACTATCACCATAAAGAAACAAAGCAGTGCTCCTG-ACTGCAGCT  199
                               || |||||||||||| |||||||||
seq2  ------------------------AAAGGCAGTGCTCCTGAACTGCAGCT  26

seq1  GCTCCTAAGAGAG-ATAAATGTGTTGATTTT--GTAACAGT--GACACC-  243
      |||| |||||||| |||||||||||||||||   |||||||   ||||| 
seq2  GCTCTTAAGAGAGAATAAATGTGTTGATTTTTGTTAACAGTTGAACACCT  76

seq1  TCACCC--TGGCTCCACAGTGG-AGCTTCGTATTTTTTGCTGAG-AAAAT  289
      ||||||   ||||||||||||| |||||||||||||| |||||| |||| 
seq2  TCACCCCTGGGCTCCACAGTGGAAGCTTCGTATTTTTGGCTGAGAAAAAA  126

seq1  ACTTTTGG-AAGC-ATATGATTCTAGTGAGATGTGAGCTGGATCGGGAGC  337
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGAAAGCAATATGATTCTAGTGAGATGTGAGCTGGATCGGGAGC  176

seq1  TGTGGGGGCTTTGAGAAACTGATATCTATAACATTGATCCTGCTAAGTAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGCTTTGAGAAACTGATATCTATAACATTGATCCTGCTAAGTAA  226

seq1  AGTTG-AAAATATCTTCTGCACTTCATAAATATACTGGCTAAAGCTTTGT  436
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAAAATATCTTCTGCACTTCATAAATATACTGGCTAAAGCTTTGT  276

seq1  GTTGTCAGCTTCCAATGAGAAAGTAGAAGACAAAACCTCATCTGTGTTAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGCTTCCAATGAGAAAGTAGAAGACAAAACCTCATCTGTGTTAG  326

seq1  GTGTTGACTCTGGGCCAAGCCCTCTAGGCGGTGGGGAACATGGCAGATGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACTCTGGGCCAAGCCCTCTAGGCGGTGGGGAACATGGCAGATGC  376

seq1  AGTTTCCTGCACTGAGTAGGCGCTGAATGCAAACTTCAGAGAGATAATCA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTGCACTGAGTAGGCGCTGAATGCAAACTTCAGAGAGATAATCA  426

seq1  TGATAAGTAAGTTCAGGCTTTTGTTGTTGTTGTTTCATTCATTTTCTATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTAAGTTCAGGCTTTTGTTGTTGTTGTTTCATTCATTTTCTATT  476

seq1  TGCTTGTAATAGTTATAAAAAATCCTAGGCTTCATTGCAATATTTTAATG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAATAGTTATAAAAAATCCTAGGCTTCATTGCAATATTTTAATG  526

seq1  CATGTAGACAGTGAGCTTTGATCATACTAGAGATATAAGGACTAGAGATA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACAGTGAGCTTTGATCATACTAGAGATATAAGGACTAGAGATA  576

seq1  ATAAAATACCTTGTGCTGAGGAGCTGTGGAAGGCGAATGGTCTTTCTTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACCTTGTGCTGAGGAGCTGTGGAAGGCGAATGGTCTTTCTTTA  626

seq1  AAAATTTGCGAGGGGCATTTTTTTTTGTTCTTGTTGTATTTTGTTTTTTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCGAGGGGCATTTTTTTTTGTTCTTGTTGTATTTTGTTTTTTG  676

seq1  TTTTTGTTTTTATTTTTTTTTCCAAGACAGGGTTTCTCTGTGCAGCCCCG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTATTTTTTTTTCCAAGACAGGGTTTCTCTGTGCAGCCCCG  726

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  776

seq1  CCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAC  826

seq1  GCCCGGCTTTTTGTTTGTTTGTTTGTTTAATTAGATTTGTCCATTTTATT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCTTTTTGTTTGTTTGTTTGTTTAATTAGATTTGTCCATTTTATT  876

seq1  TTCTGTGTGTTTTGCCTGCCTGTATGCATGTGCATCAGGTGCATGCTTGG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGTTTTGCCTGCCTGTATGCATGTGCATCAGGTGCATGCTTGG  926

seq1  TGCGTGGAGGTCAGAACAGAGCATTGGATTTCTTGGAACTGGAGCTACAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGAGGTCAGAACAGAGCATTGGATTTCTTGGAACTGGAGCTACAA  976

seq1  ATGGTTTGAGCTACCATGTAATCACTGAGAGATGAACCTGAGTCTGCTCC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGAGCTACCATGTAATCACTGAGAGATGAACCTGAGTCTGCTCC  1026

seq1  ACTGACATTTTTGAGAATTC  1206
      ||||||||||||||||||||
seq2  ACTGACATTTTTGAGAATTC  1046