BAC Information

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BAC

Clone NameB6Ng01-325E01
Chromosome16 (Build37)
Map Location 92,949,905 - 93,089,122
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325E01.bB6Ng01-325E01.g
ACCGA113359GA113360
length7151,155
definitionB6Ng01-325E01.b B6Ng01-325E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,088,409 - 93,089,122)(92,949,905 - 92,951,062)
sequence
gaattctattaaaataacattttgtagctcccatgtgcaagttaactgtt
accccacgtgcaagcaattaactactgatgtgtgcacttttgttccaact
ggcgctaaaaaaaaaaagagagagagacacattcaatggattatatttta
ggatttgagtgttttatagtgatgattgggcagtcactgtagaaaggggg
aagaaacgtgcagatcctgccgtgtaaggtgattgatcccagagtgactc
ctgagagctccacagagcaccaaaacccttccaaagatgccccgtctaca
gccagaaggcactgtgtaaactacagagcttaagctcctggattgaaagc
tagtgggaagaatgagtcccatcctgcaaagaggctgagccaagaggagt
cagccgagtggcagacacagaacccagaaacggggtggataggctcccgg
ttggtgttctccactgtcccctacagatcccatttgggcttgttaatatc
gattatcaactcaacaggagctgggagcgcccaggaggcagccctctggg
catgcttatgagaggtttttctggattgggttcttggaagcgaaaagacc
tgtcttaaatgggaagagcattttgagacatactgtctgttcctccttcc
tttcctccctctgtgcctggatcctcccctaccccacgtcatcatgggga
tggcctgtatggctg
gaattcacatcattttgtatgttacagttcaccttcaagggaccaaggca
ggatctcaaggcaggaaccaaggagaagacagatctcaccagtttgctct
ggttgctttcctgagcacctagggatggcgccacccacagtgggcttggc
atccttccagatcagtcatcagtcaagatgatttcccatgggtatgcctt
caggtcagtctgaaggaatcaattcactaaaaagttgaggtcccctcttc
ccagatgacatctaatttgtgtcaaattgacatctgaaattagccaccac
cataactaagccattttaagaaacattggtggtctttatgtctagcctag
tgctttctcgtttctttctactttcttttattaagaacttgtttctgcat
gacattattcaaaaaaggacttctagaaaaggtgtaagagagtggcctgg
aaaatcagagcagggcaggactctggggatatctggctagagagctgtga
aaaacgtagtagtcaggactgcgctctttaagatgtcaacactggacagg
atgtgagcaaggaccagccatttgtacagtgtcagctcttactcccttgc
cttgaatctgtgttctttggtactggactctcaattgtccccaagtgcac
cagcctctgagtcttgtgtcattattcctatgatgtctgctttctttttt
ctacaccttccctgccacacagactgtttcctcagaccgtagttctttcg
tttccatctctgactacataaacacacgcaatgtgtgtacaatagtagaa
aatatatcgggaggaacccgttctaactatggggcatatttgtgtatgtg
cagatgtacattatgagcagcacatgtacatagctgtgtgcagacagaac
ccagaggacaacctcagtgtctttcctcagctgtcacccatattttcttt
atttgagacagggcctcccactgactgggggctcactaagtgggctggat
ggatgctcagtaagtgccagagggcagggcaggagttcataaggtcagtt
ctggctactaggacttcatattacttctttgaacattgtcttcttcttca
cagtggctgcgactacaacacatggtaagtgcgtctggggctttgactca
gtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93088409_93089122
seq2: B6Ng01-325E01.b_48_762 (reverse)

seq1  CAGCCATACAGGCCATCCCCATGATGACGTGGGGTA-GGGAGGATCCAGG  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGCCATACAGGCCATCCCCATGATGACGTGGGGTAGGGGAGGATCCAGG  50

seq1  CACAGAGGGAGGAAAGGAAGGAGGAACAGACAGTATGTCTCAAAATGCTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGAGGAAAGGAAGGAGGAACAGACAGTATGTCTCAAAATGCTC  100

seq1  TTCCCATTTAAGACAGGTCTTTTCGCTTCCAAGAACCCAATCCAGAAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTAAGACAGGTCTTTTCGCTTCCAAGAACCCAATCCAGAAAAA  150

seq1  CCTCTCATAAGCATGCCCAGAGGGCTGCCTCCTGGGCGCTCCCAGCTCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATAAGCATGCCCAGAGGGCTGCCTCCTGGGCGCTCCCAGCTCCT  200

seq1  GTTGAGTTGATAATCGATATTAACAAGCCCAAATGGGATCTGTAGGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTGATAATCGATATTAACAAGCCCAAATGGGATCTGTAGGGGAC  250

seq1  AGTGGAGAACACCAACCGGGAGCCTATCCACCCCGTTTCTGGGTTCTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAACACCAACCGGGAGCCTATCCACCCCGTTTCTGGGTTCTGTG  300

seq1  TCTGCCACTCGGCTGACTCCTCTTGGCTCAGCCTCTTTGCAGGATGGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTCGGCTGACTCCTCTTGGCTCAGCCTCTTTGCAGGATGGGAC  350

seq1  TCATTCTTCCCACTAGCTTTCAATCCAGGAGCTTAAGCTCTGTAGTTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCCCACTAGCTTTCAATCCAGGAGCTTAAGCTCTGTAGTTTAC  400

seq1  ACAGTGCCTTCTGGCTGTAGACGGGGCATCTTTGGAAGGGTTTTGGTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCTTCTGGCTGTAGACGGGGCATCTTTGGAAGGGTTTTGGTGCT  450

seq1  CTGTGGAGCTCTCAGGAGTCACTCTGGGATCAATCACCTTACACGGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGCTCTCAGGAGTCACTCTGGGATCAATCACCTTACACGGCAGG  500

seq1  ATCTGCACGTTTCTTCCCCCTTTCTACAGTGACTGCCCAATCATCACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACGTTTCTTCCCCCTTTCTACAGTGACTGCCCAATCATCACTAT  550

seq1  AAAACACTCAAATCCTAAAATATAATCCATTGAATGTGTCTCTCTCTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCAAATCCTAAAATATAATCCATTGAATGTGTCTCTCTCTCTT  600

seq1  TTTTTTTTTAGCGCCAGTTGGAACAAAAGTGCACACATCAGTAGTTAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAGCGCCAGTTGGAACAAAAGTGCACACATCAGTAGTTAATT  650

seq1  GCTTGCACGTGGGGTAACAGTTAACTTGCACATGGGAGCTACAAAATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACGTGGGGTAACAGTTAACTTGCACATGGGAGCTACAAAATGTT  700

seq1  ATTTTAATAGAATTC  714
      |||||||||||||||
seq2  ATTTTAATAGAATTC  715

seq1: chr16_92949905_92951062
seq2: B6Ng01-325E01.g_69_1223

seq1  GAATTCACATCATTTTGTATGTTACAGTTCACCTTCAAGGGACCAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCATTTTGTATGTTACAGTTCACCTTCAAGGGACCAAGGCA  50

seq1  GGATCTCAAGGCAGGAACCAAGGAGAAGACAGATCTCACCAGTTTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAAGGCAGGAACCAAGGAGAAGACAGATCTCACCAGTTTGCTCT  100

seq1  GGTTGCTTTCCTGAGCACCTAGGGATGGCGCCACCCACAGTGGGCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTCCTGAGCACCTAGGGATGGCGCCACCCACAGTGGGCTTGGC  150

seq1  ATCCTTCCAGATCAGTCATCAGTCAAGATGATTTCCCATGGGTATGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCAGATCAGTCATCAGTCAAGATGATTTCCCATGGGTATGCCTT  200

seq1  CAGGTCAGTCTGAAGGAATCAATTCACTAAAAAGTTGAGGTCCCCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGTCTGAAGGAATCAATTCACTAAAAAGTTGAGGTCCCCTCTTC  250

seq1  CCAGATGACATCTAATTTGTGTCAAATTGACATCTGAAATTAGCCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGACATCTAATTTGTGTCAAATTGACATCTGAAATTAGCCACCAC  300

seq1  CATAACTAAGCCATTTTAAGAAACATTGGTGGTCTTTATGTCTAGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTAAGCCATTTTAAGAAACATTGGTGGTCTTTATGTCTAGCCTAG  350

seq1  TGCTTTCTCGTTTCTTTCTACTTTCTTTTATTAAGAACTTGTTTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCGTTTCTTTCTACTTTCTTTTATTAAGAACTTGTTTCTGCAT  400

seq1  GACATTATTCAAAAAAGGACTTCTAGAAAAGGTGTAAGAGAGTGGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTCAAAAAAGGACTTCTAGAAAAGGTGTAAGAGAGTGGCCTGG  450

seq1  AAAATCAGAGCAGGGCAGGACTCTGGGGATATCTGGCTAGAGAGCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAGCAGGGCAGGACTCTGGGGATATCTGGCTAGAGAGCTGTGA  500

seq1  AAAACGTAGTAGTCAGGACTGCGCTCTTTAAGATGTCAACACTGGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAGTAGTCAGGACTGCGCTCTTTAAGATGTCAACACTGGACAGG  550

seq1  ATGTGAGCAAGGACCAGCCATTTGTACAGTGTCAGCTCTTACTCCCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCAAGGACCAGCCATTTGTACAGTGTCAGCTCTTACTCCCTTGC  600

seq1  CTTGAATCTGTGTTCTTTGGTACTGGACTCTCAATTGTCCCCAAGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTGTGTTCTTTGGTACTGGACTCTCAATTGTCCCCAAGTGCAC  650

seq1  CAGCCTCTGAGTCTTGTGTCATTATTCCTATGATGTCTGCTTTCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGAGTCTTGTGTCATTATTCCTATGATGTCTGCTTTCTTTTTT  700

seq1  CTACACCTTCCCTGCCACACAGACTGTTTCCTCAGACCGTAGTTCTTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTTCCCTGCCACACAGACTGTTTCCTCAGACCGTAGTTCTTTCG  750

seq1  TTTCCATCTCTGACTACATAAACACACGCAATGTGTGTACAATAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCTGACTACATAAACACACGCAATGTGTGTACAATAGTAGAA  800

seq1  AATATATCGGGAGGAACCCGTTCTAACTAT-GGGCATATTTGTGTATGTG  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATATATCGGGAGGAACCCGTTCTAACTATGGGGCATATTTGTGTATGTG  850

seq1  CAGATGTACATTATGAGCAGCACATGTACATAGCTGTGTGCAGACAGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTACATTATGAGCAGCACATGTACATAGCTGTGTGCAGACAGAAC  900

seq1  CCAGAGGACAACCTCAGTGTCTTTCCTCAGCTGTCACCCATATTTTCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGAGGACAACCTCAGTGTCTTTCCTCAGCTGTCACCCATATTTTC-TT  949

seq1  TATTTGAGACAGGGCCTCCCACTGACTGGGGGCTCACTAAGTGGGCTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGACAGGGCCTCCCACTGACTGGGGGCTCACTAAGTGGGCTGGA  999

seq1  TGGATGCTCAGTAAGTGCCAGAGGGCAGGGCAGGAGTTCATAA-GTCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGATGCTCAGTAAGTGCCAGAGGGCAGGGCAGGAGTTCATAAGGTCAGT  1049

seq1  TCTGGCTACTTAAGGACTTCCATAATACTTC-TTGAACA-TGTCTCTTCC  1096
      ||||||||||  ||||||| |||| |||||| ||||||| |||||  | |
seq2  TCTGGCTACT--AGGACTT-CATATTACTTCTTTGAACATTGTCTTCTTC  1096

seq1  TTCACAGT-GCTGCGACTACAAACACATGTTAATGTGCGTCCTGGGGTTT  1145
      |||||||| ||||||||||| |||||||| ||| |||||| |||||| ||
seq2  TTCACAGTGGCTGCGACTAC-AACACATGGTAA-GTGCGT-CTGGGGCTT  1143

seq1  GAACTCAGGTCCT  1158
        ||||| |||||
seq2  TGACTCA-GTCCT  1155