BAC Information

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BAC

Clone NameB6Ng01-325E03
Chromosome16 (Build37)
Map Location 27,926,420 - 28,030,779
singlet/doubletdoublet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik, EG666717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325E03.bB6Ng01-325E03.g
ACCGA113363GA113364
length1,1741,142
definitionB6Ng01-325E03.b B6Ng01-325E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,029,580 - 28,030,779)(27,926,420 - 27,927,564)
sequence
gaattcatgttgaaaattatatataacgtagcaacttatggttagagaga
tagctttatctatctgtatttgctgacactaacacattcagaggccaaca
tgaaataatttaactgctttttgtgtcttatgaaatgttcctttccagtg
accatgtgacacaataggaagaagtagaaaaattacagtggcctcagagg
aaaactaaacaaaagttattactctctgctttcctcttttattaaataaa
tttttcttttcttgtcatttttatgtatttgaatgcagttgagatctctc
agcatggtggcatttatatctttatttattcatttaatattaagtctata
atcatttttcatgtctctaacatttttgcaacattttcattacatgtata
ttattatttgtattgaataaatagcatcacttgaatattaaacatttaga
ttgtttttgatttgtggttcccttggataacaattggtaaaattatttgt
tttgaaactgtaattctgtttgtttttacaatactgaaatataaatgtat
tttaatttgtgtaatatatgatatgttataaattcatatatacaacttct
atatgtagagatatttgggatgagaagaaattatggaactagctgtgaga
tttttggattaactggtaaactatagatgggtggacaggtgggtaggcaa
ttaggttgctagatgaaggaaagatgaaagaaattgaaaacagggaaaat
tcttactttaaggaggcataatgaatctattctaagacaatatcagaaac
cagagaaatgaatgtgttttcttggaaaataaggcacgtgcagcaagcat
gcgagtgctttcttggcacatatttagcatttaaagatgttagaaaggag
catttgtagtccttttagaaatgtagcaggtagccttagataggaggtgc
atcatgttctgtaaagcagaccgaaccaatgagtcattttagagaggttg
aataaattgaaacttatcagaataaagttgctactctcaaaggatagaag
gctagttaagaatcaaagccctgaaattgcagagtacaagccttcaactg
cctgggagcagacctggggtggaggctgaagctttgcaaggaggtatgag
agcttgctctactcttctgactct

gaattcctttttaggggggggggtagcatttgaaaattccattcctggct
ctacttcattgcagtaagtaaatcacagggccagtaattttgaggtagtc
attccactgaggtcggggattatcagagggtcaagcctgcactgctgtta
caccattaatcttcctcccagtgacagcatttcttctggcagactctgtg
acccacagattctttgtagttcaatcatccaaagggagtttttactttaa
aaatacattttttaatgcaatggaagaaagtactacaatttagagggagg
agaagcaggccactttttataaggtcatttgaacaggaattcatagtgaa
aatgtgatctctttgtggctcccagaaacatctttatttttacaggtaca
gaatcctagtacaccttttaaaattcatttgacaagttttagtgcaatta
taaaaagcagcaagtcaacctgaaattgcattaaggaaggacctgtctct
atgttgccctcactggtttttttctgctgcaatgatattttgtgggttgt
tttgttttagattggttattattcgtttccttgctttggattaaagacaa
cttttcagacaaatagcctaccacttgagaactgaacatgaagttcagag
cctgatgcatttgacaaatcctccaagccagtgttccgcagtttcccagc
tatgcacctggtcttgcatcactgctccttttccatagggtaagaaggat
ccattgtgcttaacagttcgaggtgctacagtacatcagagcagggcagg
catagggccaggagcaggggttggcgtctcacatttaatatacagtcagg
aaacagaggcaagggcttaaattgctttgctctttctatctaagcagttg
ctgctcctgcttagggtgagtgtcttcacattagttaaccagtctagaaa
ctccctcacagataccacaccagatttgttattaggtgattccaaaaata
ctctagttgacaattaatattacaatacacagctaaaataattatcgttg
ggaaatatgagaataaaatatgattaaggtaaaacaaccctagatatttc
agataaatgtagggtaatggtctttcctcattcaacatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28029580_28030779
seq2: B6Ng01-325E03.b_49_1222 (reverse)

seq1  AGAGCTCAGAAGAGT-GAGCAAGCTCTCTCATCCTTCCTTGCCCAAAGCC  49
      |||| |||||||||| |||||||  ||||||| | ||||||  |||||| 
seq2  AGAG-TCAGAAGAGTAGAGCAAG--CTCTCATACCTCCTTG--CAAAGC-  44

seq1  TCTCAGCCTCCACCCAGGGTCCTTTGCTCCCCAAGGCAGTCTGAAGGC-T  98
        |||||||||||||  ||||   |||||||  ||||||| ||||||| |
seq2  -TTCAGCCTCCACCCCAGGTC---TGCTCCC--AGGCAGT-TGAAGGCTT  87

seq1  GTACCTTCCTGCAATTTCAGGGCTTTGATTCTTAACTAGCCTTCTATCCT  148
      ||||    ||||||||||||||||||||||||||||||||||||||||| 
seq2  GTAC---TCTGCAATTTCAGGGCTTTGATTCTTAACTAGCCTTCTATCC-  133

seq1  TTTGAGAGTTAGCAACTTTATGTCTGATTAAGTTTCAATTTATTCAACCC  198
      |||||||| |||||||||||| ||||| ||||||||||||||||||||| 
seq2  TTTGAGAG-TAGCAACTTTAT-TCTGA-TAAGTTTCAATTTATTCAACC-  179

seq1  TTCTCTAAAAATGACTCATTTGGTTTCGGTCTGCTTTACAGAACATGATG  248
       ||||| |||||||||||||  | ||||||||||||||||||||||||||
seq2  -TCTCT-AAAATGACTCATT--GGTTCGGTCTGCTTTACAGAACATGATG  225

seq1  CACCCTCTTATCTAAGGCTACCCTGCTACATTTCTTAAAAGGACTACAAA  298
      || |||| |||||||||||| ||||||||||||| |||||||||||||||
seq2  CA-CCTCCTATCTAAGGCTA-CCTGCTACATTTC-TAAAAGGACTACAAA  272

seq1  TGCTCCTTTCTAACATCTTTAAATGCTAAATATGTGCCAAGAAAGCACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTCTAACATCTTTAAATGCTAAATATGTGCCAAGAAAGCACTC  322

seq1  GCATGCTTGCTGCACGTGCCTTATTTTCCAAGAAAACACATTCATTTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTGCTGCACGTGCCTTATTTTCCAAGAAAACACATTCATTTCTC  372

seq1  TGGTTTCTGATATTGTCTTAGAATAGATTCATTATGCCTCCTTAAAGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGATATTGTCTTAGAATAGATTCATTATGCCTCCTTAAAGTAA  422

seq1  GAATTTTCCCTGTTTTCAATTTCTTTCATCTTTCCTTCATCTAGCAACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCCTGTTTTCAATTTCTTTCATCTTTCCTTCATCTAGCAACCT  472

seq1  AATTGCCTACCCACCTGTCCACCCATCTATAGTTTACCAGTTAATCCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTACCCACCTGTCCACCCATCTATAGTTTACCAGTTAATCCAAA  522

seq1  AATCTCACAGCTAGTTCCATAATTTCTTCTCATCCCAAATATCTCTACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACAGCTAGTTCCATAATTTCTTCTCATCCCAAATATCTCTACAT  572

seq1  ATAGAAGTTGTATATATGAATTTATAACATATCATATATTACACAAATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTTGTATATATGAATTTATAACATATCATATATTACACAAATTA  622

seq1  AAATACATTTATATTTCAGTATTGTAAAAACAAACAGAATTACAGTTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTATATTTCAGTATTGTAAAAACAAACAGAATTACAGTTTCA  672

seq1  AAACAAATAATTTTACCAATTGTTATCCAAGGGAACCACAAATCAAAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAATTTTACCAATTGTTATCCAAGGGAACCACAAATCAAAAAC  722

seq1  AATCTAAATGTTTAATATTCAAGTGATGCTATTTATTCAATACAAATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATGTTTAATATTCAAGTGATGCTATTTATTCAATACAAATAAT  772

seq1  AATATACATGTAATGAAAATGTTGCAAAAATGTTAGAGACATGAAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATGTAATGAAAATGTTGCAAAAATGTTAGAGACATGAAAAATG  822

seq1  ATTATAGACTTAATATTAAATGAATAAATAAAGATATAAATGCCACCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGACTTAATATTAAATGAATAAATAAAGATATAAATGCCACCATG  872

seq1  CTGAGAGATCTCAACTGCATTCAAATACATAAAAATGACAAGAAAAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGATCTCAACTGCATTCAAATACATAAAAATGACAAGAAAAGAAA  922

seq1  AATTTATTTAATAAAAGAGGAAAGCAGAGAGTAATAACTTTTGTTTAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTAATAAAAGAGGAAAGCAGAGAGTAATAACTTTTGTTTAGTT  972

seq1  TTCCTCTGAGGCCACTGTAATTTTTCTACTTCTTCCTATTGTGTCACATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGAGGCCACTGTAATTTTTCTACTTCTTCCTATTGTGTCACATG  1022

seq1  GTCACTGGAAAGGAACATTTCATAAGACACAAAAAGCAGTTAAATTATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGAAAGGAACATTTCATAAGACACAAAAAGCAGTTAAATTATTT  1072

seq1  CATGTTGGCCTCTGAATGTGTTAGTGTCAGCAAATACAGATAGATAAAGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGCCTCTGAATGTGTTAGTGTCAGCAAATACAGATAGATAAAGC  1122

seq1  TATCTCTCTAACCATAAGTTGCTACGTTATATATAATTTTCAACATGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTAACCATAAGTTGCTACGTTATATATAATTTTCAACATGAAT  1172

seq1  TC  1200
      ||
seq2  TC  1174


seq1: chr16_27926420_27927564
seq2: B6Ng01-325E03.g_68_1209

seq1  GAATTCCTTTTTAGGGGGGGGGGTAGCATTTGAAAATTCCATTCCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTAGGGGGGGGGGTAGCATTTGAAAATTCCATTCCTGGCT  50

seq1  CTACTTCATTGCAGTAAGTAAATCACAGGGCCAGTAATTTTGAGGTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATTGCAGTAAGTAAATCACAGGGCCAGTAATTTTGAGGTAGTC  100

seq1  ATTCCACTGAGGTCGGGGATTATCAGAGGGTCAAGCCTGCACTGCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTGAGGTCGGGGATTATCAGAGGGTCAAGCCTGCACTGCTGTTA  150

seq1  CACCATTAATCTTCCTCCCAGTGACAGCATTTCTTCTGGCAGACTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAATCTTCCTCCCAGTGACAGCATTTCTTCTGGCAGACTCTGTG  200

seq1  ACCCACAGATTCTTTGTAGTTCAATCATCCAAAGGGAGTTTTTACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGATTCTTTGTAGTTCAATCATCCAAAGGGAGTTTTTACTTTAA  250

seq1  AAATACATTTTTTAATGCAATGGAAGAAAGTACTACAATTTAGAGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTTTTAATGCAATGGAAGAAAGTACTACAATTTAGAGGGAGG  300

seq1  AGAAGCAGGCCACTTTTTATAAGGTCATTTGAACAGGAATTCATAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGCCACTTTTTATAAGGTCATTTGAACAGGAATTCATAGTGAA  350

seq1  AATGTGATCTCTTTGTGGCTCCCAGAAACATCTTTATTTTTACAGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATCTCTTTGTGGCTCCCAGAAACATCTTTATTTTTACAGGTACA  400

seq1  GAATCCTAGTACACCTTTTAAAATTCATTTGACAAGTTTTAGTGCAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTAGTACACCTTTTAAAATTCATTTGACAAGTTTTAGTGCAATTA  450

seq1  TAAAAAGCAGCAAGTCAACCTGAAATTGCATTAAGGAAGGACCTGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAGCAAGTCAACCTGAAATTGCATTAAGGAAGGACCTGTCTCT  500

seq1  ATGTTGCCCTCACTGGTTTTTTTCTGCTGCAATGATATTTTGTGGGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCCTCACTGGTTTTTTTCTGCTGCAATGATATTTTGTGGGTTGT  550

seq1  TTTGTTTTAGATTGGTTATTATTCGTTTCCTTGCTTTGGATTAAAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAGATTGGTTATTATTCGTTTCCTTGCTTTGGATTAAAGACAA  600

seq1  CTTTTCAGACAAATAGCCTACCACTTGAGAACTGAACATGAAGTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGACAAATAGCCTACCACTTGAGAACTGAACATGAAGTTCAGAG  650

seq1  CCTGATGCATTTGACAAATCCTCCAAGCCAGTGTTCCGCAGTTTCCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCATTTGACAAATCCTCCAAGCCAGTGTTCCGCAGTTTCCCAGC  700

seq1  TATGCACCTGGTCTTGCATCACTGCTCCTTTTCCATAGGGTAAGAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCTGGTCTTGCATCACTGCTCCTTTTCCATAGGGTAAGAAGGAT  750

seq1  CCATTGTGCTTAACAGTTCGAGGTGCTACAGTACATCAGAGCAGGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGCTTAACAGTTCGAGGTGCTACAGTACATCAGAGCAGGGCAGG  800

seq1  CATAGGGCCAGGAGCAGGGGTTGGCGTCTCACATTTAATATACAGTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGCCAGGAGCAGGGGTTGGCGTCTCACATTTAATATACAGTCAGG  850

seq1  AAACAGAGGCAAGGGCTTAAATTGCTTTGCTCTTTCTATCTAAGCAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGCAAGGGCTTAAATTGCTTTGCTCTTTCTATCTAAGCAGTTG  900

seq1  CTGCTCCTGCTTAGGGTGAGTGTCTTCACATTAGTTAACCCAGTCTAGAA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGCTCCTGCTTAGGGTGAGTGTCTTCACATTAGTTAA-CCAGTCTAGAA  949

seq1  ACTCCCTCACAGATA-CACACCAGATTTGTTTATTAGGTGATTCCAAAAA  999
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  ACTCCCTCACAGATACCACACCAGATTTG-TTATTAGGTGATTCCAAAAA  998

seq1  TACTCTAGTTGACAATTAATATTAACATACACAGCTAAAAATAATTATCG  1049
      ||||||||||||||||||||||||  |||||||||| |||||||||||||
seq2  TACTCTAGTTGACAATTAATATTACAATACACAGCT-AAAATAATTATCG  1047

seq1  TTGGAAATAATGAGAATAAAATAATGATTAAAGTAAAACAACCCTAGATA  1099
      |||| ||  ||||||||||||| |||||||| ||||||||||||||||||
seq2  TTGGGAAATATGAGAATAAAAT-ATGATTAAGGTAAAACAACCCTAGATA  1096

seq1  TTTCAGATAATATTGTAGGTTAATG--TTTTTCTCATTCATCATCTAA  1145
      |||||||||  | |||||| |||||   ||| |||||||| |||||||
seq2  TTTCAGATA--AATGTAGGGTAATGGTCTTTCCTCATTCAACATCTAA  1142


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