BAC Information

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BAC

Clone NameB6Ng01-327D18
Chromosome16 (Build37)X (Build37)
Map Location 62,303,935 - 62,305,040146,136,816 - 146,137,067
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327D18.bB6Ng01-327D18.g
ACCGA114837GA114838
length1,1011,144
definitionB6Ng01-327D18.b B6Ng01-327D18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,303,935 - 62,305,040)(146,136,816 - 146,137,067)
sequence
gaattcatagaagtcaaactaggcttcagaacaatataaacacaaacaag
attactatatataatgcaaagaaaacaacagacaagacatagaactgcct
gccatatggtggtggactatggctatttttaaataaggaccgacttctga
ctttcaattttctgttctaacaatgcaactaagagggtgtctgattagtc
agcttgactagagataagactgtagtctacaagatggcattcctgtggca
ttcagttagttaattttcttttggccatttatacagtgaccctcatactt
gctttttcttctaatcaccctactccctcaccacaacaaagtagcaaagc
ataccttgcatgcttggtcaaacatattctggattttctttacactaaat
attgtcataaagatgtgcttacctactgtttcaggtctgtcaagggacca
gaacgagcactcaggaaggggcagtttgttagtagtaagtggaatagaaa
tgcctagtgatttgtaaaggtgcagagagcggtgggtcatctcctaatag
tttctggaatctatttttatgcacttgttggatcttcaaggagatgaagt
ttatacataggttaaaaatactagaatcaaatattaagatcagatagttg
taagtaagtgatcttataatagttaattaccaagacagccatctcatccc
caagtctgtttccaagttagtcatcccatatgttttggaaacctattctc
tgagccttttcatattatcttgaactacctttagctggttagcccagaca
cagcactactcttcttgtatagctattagactgtgggaggtttgaagaac
cataggtgttaatgtattaatttggttttataattcctcaagagcaattg
aaataaaattctatgactaactcagaggagtggatgcgaggcacagggtc
ctaggttatccttcacatcctactgttatatctaatctcacaacttgcta
gattaactgaacagctaaccctttgaaccacaagcagaacatagatagct
aaatggagggactatagactacaaattcttttcaagctataaggtattgt
a

gaattctttacttgtataagaagaatcttagttacggtcattccccattt
ttcccttgtatgtttagcaaataagctgtggtacatataaaatctattaa
aatactttcatcccctcccttcctaaaagaagaccagcaatggggaagac
atgatttggttagatgaaggcttctgtttgacactcttacttggtagttg
ttataacaaagcaaaaatactggaaaggataaagactagttctaatatct
aacatttaggaggaaatgcatctgattttaggatcattttggggaataac
agtagaggaatttgacatcggcaccatggttactctatcaaggaatcata
tcctaagagctttgaggtctgtgtgagccagctggaatacacacgtgcct
ttaattccaggagacacagacgagcagatctctgagttcaaggtcaaatt
ggtataaagtaagtttcaggtaaagaaaagcttaggtcggggtttttttg
gtccacacctttaatttcagcactgaagagacagaggcaagaagacctct
gaaatttaatcagtgagttctgttctgttcaattgagttactgcgttgag
aggcagtgtagtgtagtgtagttcatagcagttcagtttttggaggagac
agtttttactggggcgattttatagagaagggtggcagagagaagactgt
agacacagttgaagatagaatgagccagacaatgaggaatttgaagatta
gaacagattgctatagttagtctgaggccaagcagagtaattcagtcaga
agctaagaaaagccagtttgagtaagtcagctcagacaggagtttgagcc
aggactgctgagttgaaccagccagcaagagttcagaaaactaatatcca
ctttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacct
cactcaggatgatgcctccaggtccattcatttggctagggaatttcata
aattcattttttttaatagctgagtagtactctaatggtgtagatgtacc
acatttttctgtatcattcctctgtgaaggggcatctggattctttcagc
cttctgcctattataaaatagctgctataaacattagtggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62303935_62305040
seq2: B6Ng01-327D18.b_46_1146

seq1  GAATTCATAGAAGTCAAACTAGGCTTCAGAACAATATAAACACAAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAGTCAAACTAGGCTTCAGAACAATATAAACACAAACAAG  50

seq1  ATTACTATATATAATGCAAAGAAAACAACAGACAAGACATAGAACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATATATAATGCAAAGAAAACAACAGACAAGACATAGAACTGCCT  100

seq1  GCCATATGGTGGTGGACTATGGCTATTTTTAAATAAGGACCGACTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGGTGGTGGACTATGGCTATTTTTAAATAAGGACCGACTTCTGA  150

seq1  CTTTCAATTTTCTGTTCTAACAATGCAACTAAGAGGGTGTCTGATTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATTTTCTGTTCTAACAATGCAACTAAGAGGGTGTCTGATTAGTC  200

seq1  AGCTTGACTAGAGATAAGACTGTAGTCTACAAGATGGCATTCCTGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGACTAGAGATAAGACTGTAGTCTACAAGATGGCATTCCTGTGGCA  250

seq1  TTCAGTTAGTTAATTTTCTTTTGGCCATTTATACAGTGACCCTCATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAGTTAATTTTCTTTTGGCCATTTATACAGTGACCCTCATACTT  300

seq1  GCTTTTTCTTCTAATCACCCTACTCCCTCACCACAACAAAGTAGCAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTTCTAATCACCCTACTCCCTCACCACAACAAAGTAGCAAAGC  350

seq1  ATACCTTGCATGCTTGGTCAAACATATTCTGGATTTTCTTTACACTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTGCATGCTTGGTCAAACATATTCTGGATTTTCTTTACACTAAAT  400

seq1  ATTGTCATAAAGATGTGCTTACCTACTGTTTCAGGTCTGTCAAGGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATAAAGATGTGCTTACCTACTGTTTCAGGTCTGTCAAGGGACCA  450

seq1  GAACGAGCACTCAGGAAGGGGCAGTTTGTTAGTAGTAAGTGGAATAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAGCACTCAGGAAGGGGCAGTTTGTTAGTAGTAAGTGGAATAGAAA  500

seq1  TGCCTAGTGATTTGTAAAGGTGCAGAGAGCGGTGGGTCATCTCCTAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTGATTTGTAAAGGTGCAGAGAGCGGTGGGTCATCTCCTAATAG  550

seq1  TTTCTGGAATCTATTTTTATGCACTTGTTGGATCTTCAAGGAGATGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAATCTATTTTTATGCACTTGTTGGATCTTCAAGGAGATGAAGT  600

seq1  TTATACATAGGTTAAAAATACTAGAATCAAATATTAAGATCAGATAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATAGGTTAAAAATACTAGAATCAAATATTAAGATCAGATAGTTG  650

seq1  TAAGTAAGTGATCTTATAATAGTTAATTACCAAGACAGCCATCTCATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGTGATCTTATAATAGTTAATTACCAAGACAGCCATCTCATCCC  700

seq1  CAAGTCTGTTTCCAAGTTAGTCATCCCATATGTTTTGGAAACCTATTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGTTTCCAAGTTAGTCATCCCATATGTTTTGGAAACCTATTCTC  750

seq1  TGAGCCTTTTCATATTATCTTGAACTACCTTTAGCTGGTTAGCCCAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTTTCATATTATCTTGAACTACCTTTAGCTGGTTAGCCCAGACA  800

seq1  CAGCACTACTCTTCTTGTATAGCTATTAGACTGTGGGAGGTTTGAAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTACTCTTCTTGTATAGCTATTAGACTGTGGGAGGTTTGAAGAAC  850

seq1  CATAGGTGTTAATGTATTAATTTGGTTTTATAATTCCTCAAGAGCAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGTTAATGTATTAATTTGGTTTTATAATTCCTCAAGAGCAATTG  900

seq1  AAATAAAATTCTATGACTAACTCAGAGGAGTGGATGCGAGGCACAGGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTCTATGACTAACTCAGAGGAGTGGATGCGAGGCACAGGGTC  950

seq1  CTAGGTTATCCTTCACATCCTACTGTTATATCTAATCTCACAACTTGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTATCCTTCACATCCTACTGTTATATCTAATCTCACAACTTGCTA  1000

seq1  GATTAACTGAACAGCTAA-CCTTTGAACCACAAAGCAAGAACATAGAATA  1049
      |||||||||||||||||| |||||||||||| |||| ||||||||| |||
seq2  GATTAACTGAACAGCTAACCCTTTGAACCAC-AAGC-AGAACATAG-ATA  1047

seq1  GCTAAATGGAGGGACCTATAAGAACTACAAATTCTTTCAAGGCTATAAAG  1099
      |||||||||||||| |||||   ||||||||||||||  | ||||||| |
seq2  GCTAAATGGAGGGA-CTATA--GACTACAAATTCTTTTCAAGCTATAAGG  1094

seq1  TATTGTA  1106
      |||||||
seq2  TATTGTA  1101


seq1: chrX_146136816_146137067
seq2: B6Ng01-327D18.g_953_1206 (reverse)

seq1  TGCTCCACT-ATGTTCATAGCAGCCTTATTTATAATAGCCAAAAGCTGGA  49
      ||||||||| ||||| ||||||| ||  |||||||||| || |||   ||
seq2  TGCTCCACTAATGTTTATAGCAG-CTATTTTATAATAGGCAGAAGGCTGA  49

seq1  AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG-TAAATGTGGTA  98
      ||||| ||||||||||||  |||||||||| |||||||  ||||||||||
seq2  AAGAATCCAGATGCCCCTTCACAGAGGAAT-GATACAGAAAAATGTGGTA  98

seq1  CATCTACA-CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG  147
      |||||||| || | ||||||||||||||||||||||| ||||||||||||
seq2  CATCTACACCATTAGAGTACTACTCAGCTATTAAAAAAAATGAATTTATG  148

seq1  AAATT-CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG  196
      ||||| |||||||||||| ||||||||||| |||||||||||||||||||
seq2  AAATTCCCTAGCCAAATGAATGGACCTGGA-GGCATCATCCTGAGTGAGG  197

seq1  TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT-AAGTGG  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAAGTGG  247

seq1  ATATTAG  252
      |||||||
seq2  ATATTAG  254


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