BAC Information

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BAC

Clone NameB6Ng01-327J18
Chromosome16 (Build37)
Map Location 44,706,139 - 44,721,691
singlet/doubletdoublet
Overlap genenone
Upstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327J18.bB6Ng01-327J18.g
ACCGA115111GA115112
length607725
definitionB6Ng01-327J18.b B6Ng01-327J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,706,139 - 44,706,745)(44,720,993 - 44,721,691)
sequence
gaattcattctctgttggaaagttatatgtgaatacaactaacacaagta
aagtcatggacagtgcctgtggcagcttgaggggggcagagttgagttgg
tgtgaatgcaaaggaagatgtatagggcagcatttgatcaggatgtaagg
tgtaagcatgagcgtgtcagtgcaaagggggaaagcactgtgttttgggt
aaggaaacaggaggaagtgcaaatatgtgtgttagaaggggagggcacct
gcaagtgtgttcatagcaggagcccttgaatagagctggaagcaattatc
aatggagggaggtttgcaccactgtggttcttcatggggagtcaactttg
tccctcaggggacttttttgacagtgtctccacatgtttttaagtgggca
cagctagggtaaaagccagaaagacattgtatgtccttcaatgaacagga
tatcaaaacagacttccatcaaaatgtgaatggtaccagggtttagaaac
tctaaaaagaaagtgagaaatcagtaagaaaaagaaagaaaagagacaga
taggcagatagatagatagatagatagatagatagatagatagatggatg
gatggat
gaattccgtggaagtggagtagcagatgcttgtgagccaccatgtgggtg
ctgacaactgtacccaggccctctgcaagagcagcaagtgtgcccaacta
tgggctcctctcaccagtcccctaagacttttcttcttttttttttttaa
gattttatttatttattatatgtacactgtagctatcttcagacatttca
gaagagggcatcagatctcgttacagatgattgtgaatcacaatgtggtt
gctgggatttgaactgagccaccctccccctttgtttggtttcgtttcct
ttcatatggggtttttgtttgtttgttttttgtttttcgaacgggtttct
ctttgtagccctgcctgtcctggaacttactctgtagaccaggctggcct
tgaactaaaaaacctgcctgcctctgcctcccaagtgctgggattaaagg
cgtgcaccaccactgcctacccctaaaatattttcgaaaggagtttagaa
aactgtaatctgttgaggttatacatttatacatgtggaatgctctagaa
aatccttaaagggtagtaacagtgatcagttttcatcagtaagacagact
tttttcttcattgactttttattttctattttaaaactgagaaattatta
caatgttgagggaaaaaatgctttaatactaaaaaaaaaaaaaaacaaag
aaaaacactgaagactgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44706139_44706745
seq2: B6Ng01-327J18.b_47_653

seq1  GAATTCATTCTCTGTTGGAAAGTTATATGTGAATACAACTAACACAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTGTTGGAAAGTTATATGTGAATACAACTAACACAAGTA  50

seq1  AAGTCATGGACAGTGCCTGTGGCAGCTTGAGGGGGGCAGAGTTGAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGGACAGTGCCTGTGGCAGCTTGAGGGGGGCAGAGTTGAGTTGG  100

seq1  TGTGAATGCAAAGGAAGATGTATAGGGCAGCATTTGATCAGGATGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCAAAGGAAGATGTATAGGGCAGCATTTGATCAGGATGTAAGG  150

seq1  TGTAAGCATGAGCGTGTCAGTGCAAAGGGGGAAAGCACTGTGTTTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCATGAGCGTGTCAGTGCAAAGGGGGAAAGCACTGTGTTTTGGGT  200

seq1  AAGGAAACAGGAGGAAGTGCAAATATGTGTGTTAGAAGGGGAGGGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGGAGGAAGTGCAAATATGTGTGTTAGAAGGGGAGGGCACCT  250

seq1  GCAAGTGTGTTCATAGCAGGAGCCCTTGAATAGAGCTGGAAGCAATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTGTTCATAGCAGGAGCCCTTGAATAGAGCTGGAAGCAATTATC  300

seq1  AATGGAGGGAGGTTTGCACCACTGTGGTTCTTCATGGGGAGTCAACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGGAGGTTTGCACCACTGTGGTTCTTCATGGGGAGTCAACTTTG  350

seq1  TCCCTCAGGGGACTTTTTTGACAGTGTCTCCACATGTTTTTAAGTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGGGGACTTTTTTGACAGTGTCTCCACATGTTTTTAAGTGGGCA  400

seq1  CAGCTAGGGTAAAAGCCAGAAAGACATTGTATGTCCTTCAATGAACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGGTAAAAGCCAGAAAGACATTGTATGTCCTTCAATGAACAGGA  450

seq1  TATCAAAACAGACTTCCATCAAAATGTGAATGGTACCAGGGTTTAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACAGACTTCCATCAAAATGTGAATGGTACCAGGGTTTAGAAAC  500

seq1  TCTAAAAAGAAAGTGAGAAATCAGTAAGAAAAAGAAAGAAAAGAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGAAAGTGAGAAATCAGTAAGAAAAAGAAAGAAAAGAGACAGA  550

seq1  TAGGCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATG  600

seq1  GATGGAT  607
      |||||||
seq2  GATGGAT  607

seq1: chr16_44720993_44721691
seq2: B6Ng01-327J18.g_93_791 (reverse)

seq1  CACACACACAGTCTTCAGTGTTTTTCTTTGTTTTTTTTTTTTTTTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGTCTTCAGTGTTTTTCTTTGTTTTTTTTTTTTTTTAGTAT  50

seq1  TAAAGCATTTTTTCCCTCAACATTGTAATAATTTCTCAGTTTTAAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTTTTCCCTCAACATTGTAATAATTTCTCAGTTTTAAAATAG  100

seq1  AAAATAAAAAGTCAATGAAGAAAAAAGTCTGTCTTACTGATGAAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAGTCAATGAAGAAAAAAGTCTGTCTTACTGATGAAAACTGA  150

seq1  TCACTGTTACTACCCTTTAAGGATTTTCTAGAGCATTCCACATGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTACTACCCTTTAAGGATTTTCTAGAGCATTCCACATGTATAAA  200

seq1  TGTATAACCTCAACAGATTACAGTTTTCTAAACTCCTTTCGAAAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACCTCAACAGATTACAGTTTTCTAAACTCCTTTCGAAAATATTT  250

seq1  TAGGGGTAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGC  300

seq1  AGAGGCAGGCAGGTTTTTTAGTTCAAGGCCAGCCTGGTCTACAGAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGGTTTTTTAGTTCAAGGCCAGCCTGGTCTACAGAGTAAG  350

seq1  TTCCAGGACAGGCAGGGCTACAAAGAGAAACCCGTTCGAAAAACAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGGCAGGGCTACAAAGAGAAACCCGTTCGAAAAACAAAAAA  400

seq1  CAAACAAACAAAAACCCCATATGAAAGGAAACGAAACCAAACAAAGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAACCCCATATGAAAGGAAACGAAACCAAACAAAGGGGG  450

seq1  AGGGTGGCTCAGTTCAAATCCCAGCAACCACATTGTGATTCACAATCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCTCAGTTCAAATCCCAGCAACCACATTGTGATTCACAATCATC  500

seq1  TGTAACGAGATCTGATGCCCTCTTCTGAAATGTCTGAAGATAGCTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACGAGATCTGATGCCCTCTTCTGAAATGTCTGAAGATAGCTACAGT  550

seq1  GTACATATAATAAATAAATAAAATCTTAAAAAAAAAAAAGAAGAAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATAATAAATAAATAAAATCTTAAAAAAAAAAAAGAAGAAAAGTC  600

seq1  TTAGGGGACTGGTGAGAGGAGCCCATAGTTGGGCACACTTGCTGCTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGACTGGTGAGAGGAGCCCATAGTTGGGCACACTTGCTGCTCTTG  650

seq1  CAGAGGGCCTGGGTACAGTTGTCAGCACCCACATGGTGGCTCACAAGCA  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCCTGGGTACAGTTGTCAGCACCCACATGGTGGCTCACAAGCA  699