BAC Information

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BAC

Clone NameB6Ng01-327L16
Chromosome16 (Build37)
Map Location 53,432,245 - 53,542,689
singlet/doubletdoublet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L16.bB6Ng01-327L16.g
ACCGA115193GA115194
length1,0581,071
definitionB6Ng01-327L16.b B6Ng01-327L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,432,245 - 53,433,296)(53,541,611 - 53,542,689)
sequence
gaattcttgaatactatatactgagaagtcaaaccaataacaactcttct
gtgagtgaagcaaccccaatagagggaagaggaggatgtggtctgagact
taagactgtcacttcggctatggtcagaaaaaacaagaaaaagagcaggg
cagaatcagcctattaaaatgcctctttcttgtaaccacccttgcctcaa
tgactcatgaccaagagaggagcaatcaaagtgagagtactaagacagac
tatccctatgtattattgcctttgtatttgccttttatattattttttgt
ttcagtgaaatccatgtaagtgttcatttgggtcacttgcagagttttcg
cttagggatattgtctaattttgcacagtgggctgctgatatgtggacct
ttgcatcctttaaagatgaagcacagtgatgagcaaacaatcatggggat
atgtttgagtttagagatattatagttttcaagaatataagagtgtagag
ttgaagaagaagaagaaaaaaaaggaaggagaaaacatacaagggttttg
cctttagtaactggagacgtacaggtgatataaaataagcaaacattcag
acaaacaaacaaacaaggtatttgtatactcaaggttgcttagcacagca
aaaccttcagttagtttgaacatctgatttggatagttctattaactaat
aaggttaatatttttttttattttttattttaattaggtattttctttgt
ttacatttccaatgctatcacaaaagccccccataccctccccccctccc
ctacccacccactcccacttcttggccctggcattcctctgtactgaggc
attataaagtttgcaagaccaatgggcctctcttccactgatggccgact
aggtcatcttcttgatacatatgcagctagagacacagctcccggggggt
acttggattagttcataatattgctccactctaatggttgcaaacccttt
agctccttgagtactttcctcctaagcctctccattgggggccctactca
ctgaaaag

gaattctatttaaatgatttctcaaattgttaacgttatagcactatgtt
attttgttttcagttgggtcaacatgattgaagattcatttctcctaaaa
gtattaggacatcttttacatatgatgggaccactattttattacattca
agaattagcttactagcttcaactttactaaatattttattataagataa
tatagtttgaatctttgataacaaaaatctgtgcgtgatggaactgaata
ttctgtgtggatattatcagctctaataatacttaggtctctgcagttct
ctttccatcaataaagccaggacagccacatggaaataagtctttagtcg
ttatgagagaactataaataagtacttcaaacaaatttatctttataaaa
caaatctctgtcccctcaccaccaaaaccaatgtcttattctgtattttt
ggtagatttcttttgagtgtttgttttcaggctggttgatcttaacctgg
gttgcagataaataaatgtacaaaccaccggatgaacacgggatgctgac
aatacatggtctggtttctggtctcatcttatctgatacagattccctta
ataatatttaattcttctaccaggccaaggaagcacttggaaaatataat
aggcacagtgcattacttcaatttgatttcagctggctgtccttctgtgt
catcatattaactagagcactactttagccgtataaatctcaataatgtc
actgataaacacacccacttgctttatttcattgcttgacagacagaaaa
ttatagtgaagattctaggtatgaagaatgtattaggaaagaccttaaaa
taactatgactattctatgtgcaccacatgagctccgatatgccagacac
agaggtaaatgtaacttaccagaggccacattctctaaaactttgcaggg
aagaaatggaggtcctaatgtgaaaacgctttgctgtgagattcttagcg
gacttactaccttcagaagctttatcgtggtttgagagccttttatgaaa
agatcttcatagaaagtaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53432245_53433296
seq2: B6Ng01-327L16.b_46_1103

seq1  GAATTCTTGAATACTATATACTGAGAAGTCAAACCAATAACAACTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATACTATATACTGAGAAGTCAAACCAATAACAACTCTTCT  50

seq1  GTGAGTGAAGCAACCCCAATAGAGGGAAGAGGAGGATGTGGTCTGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAAGCAACCCCAATAGAGGGAAGAGGAGGATGTGGTCTGAGACT  100

seq1  TAAGACTGTCACTTCGGCTATGGTCAGAAAAAACAAGAAAAAGAGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTCACTTCGGCTATGGTCAGAAAAAACAAGAAAAAGAGCAGGG  150

seq1  CAGAATCAGCCTATTAAAATGCCTCTTTCTTGTAACCACCCTTGCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGCCTATTAAAATGCCTCTTTCTTGTAACCACCCTTGCCTCAA  200

seq1  TGACTCATGACCAAGAGAGGAGCAATCAAAGTGAGAGTACTAAGACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATGACCAAGAGAGGAGCAATCAAAGTGAGAGTACTAAGACAGAC  250

seq1  TATCCCTATGTATTATTGCCTTTGTATTTGCCTTTTATATTATTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTATGTATTATTGCCTTTGTATTTGCCTTTTATATTATTTTTTGT  300

seq1  TTCAGTGAAATCCATGTAAGTGTTCATTTGGGTCACTTGCAGAGTTTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAAATCCATGTAAGTGTTCATTTGGGTCACTTGCAGAGTTTTCG  350

seq1  CTTAGGGATATTGTCTAATTTTGCACAGTGGGCTGCTGATATGTGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGATATTGTCTAATTTTGCACAGTGGGCTGCTGATATGTGGACCT  400

seq1  TTGCATCCTTTAAAGATGAAGCACAGTGATGAGCAAACAATCATGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTTTAAAGATGAAGCACAGTGATGAGCAAACAATCATGGGGAT  450

seq1  ATGTTTGAGTTTAGAGATATTATAGTTTTCAAGAATATAAGAGTGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGTTTAGAGATATTATAGTTTTCAAGAATATAAGAGTGTAGAG  500

seq1  TTGAAGAAGAAGAAGAAAAAAAAGGAAGGAGAAAACATACAAGGGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGAAGAAGAAAAAAAAGGAAGGAGAAAACATACAAGGGTTTTG  550

seq1  CCTTTAGTAACTGGAGACGTACAGGTGATATAAAATAAGCAAACATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTAACTGGAGACGTACAGGTGATATAAAATAAGCAAACATTCAG  600

seq1  ACAAACAAACAAACAAGGTATTTGTATACTCAAGGTTGCTTAGCACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAGGTATTTGTATACTCAAGGTTGCTTAGCACAGCA  650

seq1  AAACCTTCAGTTAGTTTGAACATCTGATTTGGATAGTTCTATTAACTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCAGTTAGTTTGAACATCTGATTTGGATAGTTCTATTAACTAAT  700

seq1  AAGGTTAATATTTTTTTTTATTTTTTATTTTAATTAGGTATTTTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAATATTTTTTTTTATTTTTTATTTTAATTAGGTATTTTCTTTGT  750

seq1  TTACATTTCCAATGCTATCACAAAAGCCCCCCATACCCTCCCCCCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATCACAAAAGCCCCCCATACCCTCCCCCCCTCCC  800

seq1  CTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCTCTGTACTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCTCTGTACTGAGGC  850

seq1  A-TATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCGAC  899
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTATAAAGTTTGCAAGACCAATGGGCCTCTC-TTCCACTGATGGCCGAC  899

seq1  TAGGCCATCTTC-TGATACATATGCAGCTAGAGACACAAGCT-CCGGGGG  947
      |||| ||||||| |||||||||||||||||||||||| |||| |||||||
seq2  TAGGTCATCTTCTTGATACATATGCAGCTAGAGACAC-AGCTCCCGGGGG  948

seq1  GTACT--GGTTAGTTCATATTATTGTTCCACCTCT-ATGGTTGCAGACCC  994
      |||||  | |||||||||| ||||| |||| |||| ||||||||| | ||
seq2  GTACTTGGATTAGTTCATAATATTGCTCCA-CTCTAATGGTTGCA-AACC  996

seq1  CTTTAGCTCCTTGAGTACTTT-CTC--TAGCTCCTCCATTGGGGG-CGTA  1040
      ||||||||||||||||||||| |||   |||  |||||||||||| | ||
seq2  CTTTAGCTCCTTGAGTACTTTCCTCCTAAGCCTCTCCATTGGGGGCCCTA  1046

seq1  CTCACTGAAAAG  1052
      ||||||||||||
seq2  CTCACTGAAAAG  1058


seq1: chr16_53541611_53542689
seq2: B6Ng01-327L16.g_68_1138 (reverse)

seq1  TTTTACTTTCTAATGAAGATCTTTTTCATAAAGGGCTTCTCAAAACCAAC  50
      ||||||||||| ||||||||| |||||||||| ||| |||||||  | ||
seq2  TTTTACTTTCT-ATGAAGATC-TTTTCATAAAAGGC-TCTCAAA--CCAC  45

seq1  GATAAAGGCTTCTGAAGGGTAGTAAGTCCGCTAAGAATCTCACAGCAAAG  100
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GATAAA-GCTTCTGAA-GGTAGTAAGTCCGCTAAGAATCTCACAGCAAAG  93

seq1  CGGTTTTCACATTAGGACCTCCATTTCTTCCCTGCAAAGTTTTAGAGAAT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-GTTTTCACATTAGGACCTCCATTTCTTCCCTGCAAAGTTTTAGAGAAT  142

seq1  GTGGCCTCTGGTAAGTTACATTTACCTCTGTGTCTGGCATATCGGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCTGGTAAGTTACATTTACCTCTGTGTCTGGCATATCGGAGCTC  192

seq1  ATGTGGTGCACATAGAATAGTCATAGTTATTTTAAGGTCTTTCCTAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCACATAGAATAGTCATAGTTATTTTAAGGTCTTTCCTAATAC  242

seq1  ATTCTTCATACCTAGAATCTTCACTATAATTTTCTGTCTGTCAAGCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATACCTAGAATCTTCACTATAATTTTCTGTCTGTCAAGCAATG  292

seq1  AAATAAAGCAAGTGGGTGTGTTTATCAGTGACATTATTGAGATTTATACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCAAGTGGGTGTGTTTATCAGTGACATTATTGAGATTTATACG  342

seq1  GCTAAAGTAGTGCTCTAGTTAATATGATGACACAGAAGGACAGCCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTAGTGCTCTAGTTAATATGATGACACAGAAGGACAGCCAGCTG  392

seq1  AAATCAAATTGAAGTAATGCACTGTGCCTATTATATTTTCCAAGTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATTGAAGTAATGCACTGTGCCTATTATATTTTCCAAGTGCTTC  442

seq1  CTTGGCCTGGTAGAAGAATTAAATATTATTAAGGGAATCTGTATCAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTGGTAGAAGAATTAAATATTATTAAGGGAATCTGTATCAGATA  492

seq1  AGATGAGACCAGAAACCAGACCATGTATTGTCAGCATCCCGTGTTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGACCAGAAACCAGACCATGTATTGTCAGCATCCCGTGTTCATCC  542

seq1  GGTGGTTTGTACATTTATTTATCTGCAACCCAGGTTAAGATCAACCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGTACATTTATTTATCTGCAACCCAGGTTAAGATCAACCAGCC  592

seq1  TGAAAACAAACACTCAAAAGAAATCTACCAAAAATACAGAATAAGACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAAACACTCAAAAGAAATCTACCAAAAATACAGAATAAGACATT  642

seq1  GGTTTTGGTGGTGAGGGGACAGAGATTTGTTTTATAAAGATAAATTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGTGGTGAGGGGACAGAGATTTGTTTTATAAAGATAAATTTGTT  692

seq1  TGAAGTACTTATTTATAGTTCTCTCATAACGACTAAAGACTTATTTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTACTTATTTATAGTTCTCTCATAACGACTAAAGACTTATTTCCAT  742

seq1  GTGGCTGTCCTGGCTTTATTGATGGAAAGAGAACTGCAGAGACCTAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCCTGGCTTTATTGATGGAAAGAGAACTGCAGAGACCTAAGTA  792

seq1  TTATTAGAGCTGATAATATCCACACAGAATATTCAGTTCCATCACGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAGCTGATAATATCCACACAGAATATTCAGTTCCATCACGCACA  842

seq1  GATTTTTGTTATCAAAGATTCAAACTATATTATCTTATAATAAAATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTATCAAAGATTCAAACTATATTATCTTATAATAAAATATTT  892

seq1  AGTAAAGTTGAAGCTAGTAAGCTAATTCTTGAATGTAATAAAATAGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTTGAAGCTAGTAAGCTAATTCTTGAATGTAATAAAATAGTGGT  942

seq1  CCCATCATATGTAAAAGATGTCCTAATACTTTTAGGAGAAATGAATCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATATGTAAAAGATGTCCTAATACTTTTAGGAGAAATGAATCTTC  992

seq1  AATCATGTTGACCCAACTGAAAACAAAATAACATAGTGCTATAACGTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTTGACCCAACTGAAAACAAAATAACATAGTGCTATAACGTTAA  1042

seq1  CAATTTGAGAAATCATTTAAATAGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  CAATTTGAGAAATCATTTAAATAGAATTC  1071


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