BAC Information

Click to search

BAC

Clone NameB6Ng01-328J12
Chromosome16 (Build37)
Map Location 10,547,886 - 10,655,465
singlet/doubletdoublet
Overlap gene4932416N17Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328J12.bB6Ng01-328J12.g
ACCGA115815GA115816
length1,1551,043
definitionB6Ng01-328J12.b B6Ng01-328J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,547,886 - 10,549,032)(10,654,425 - 10,655,465)
sequence
gaattcctttatagaagctttctggaggaggcaacactgtatcagagatc
ccctaaatggggaagtgtcatcataaggcacagccacattaggggcacca
tagtcagatttatggccaatccaggtaggaactcatagctatgggaagca
aggctgtgagaagaaagaggctttatcagacatgggggccaatgaacacc
taacgtttgtccagtctggggtgggggttggggagcagaacatgggattt
tccgtactgaaacaggaaagccaagtaaagcagagcagatcgccttcccg
gttactaagtgactgacggccccagatcctttaaaacagacccaagccag
ggaaagcgtgcattcatgcatctcctgccgcagtctctagatcagggaga
cccaggatgcatcaccctgctggtctccaggacatcattgtcctgatgta
gcagtcttggtggaataagaggttaagattttaagaaaattgagagtagg
gttctttagttgttgattttatatttctttcttcagggtcacagaggtgt
aagggggaacaagtctttctctgctcctgagtgctggaattacagacata
atgtgtctgtatcacatactgtgtcactataccctaccactgcttataag
gcattctttccttcacagcacttccatcttacaaactggaaagaaacttt
tctgttacacactttttgctaaatagtgaaaagctgtacttgaattattt
acataccaagtttggtcagtcacttagttggggacagatggaacagtcag
gtttgttatttcatgacacatcattgatggttcactgccagactagtaac
aaggcttgtgacattaactgacaaatgtctacccttcagcagaatctcta
cttattagagtccttttgattgttactgaaatgtcattttggaaaagggg
gccatttgcttcacaaactgaatagaaccttggtttgttatgtgttgtct
cattctagtcacttgatgatgtcaagattcttggttcaagtgatgattct
gccaaattgccttctgagcttggtgaggctatggaatactctgcacctga
acgtgtgatctgctacaccatagcagaatagcggggtgcctagttagaac
gaagc
gaattcacagagagtagtgaagactaagtgccgagttctagaaccttcct
cactttacctaataccatggttcccaatcctggttctgcaatgggatcct
ctagaaggcattcagatgtcaggcttggctccagagagctctgaacttag
agctgatggccccagctctggctaactcagaactgctagcctccctccat
ctgccttgccctagctgacaggtcaggggtggactccatgctccacagca
gctctgcacactagggtactgtgagaaaccaagtcacttctatttccagg
caaataaaagtagaaatgacaatttaagcattgaagtattccaagttcag
tattttgtatatttctcttgctctccattctcagacatggtttcatgtcg
tgatcgtcctgtctccctgtcccaagttctgagggtacactcagagaaag
ctgttgggtgcagcatgggtttctcttcctggaagtggccctgagcactg
aatgggaacactcaggagaggcaagaggatatctttgtgctcgctagaca
tcttaccacctgagctccagttctgtagatacttcttaaaaacagtagag
caagaaacatttgacattctcttgaaaacttggtgactatctactgtgtt
tgctacatgttacactggtgactgagacaacagagagcctcacctgggag
tctttaagtcttgtgaggggcaaccattctttgctctttttttttttttt
tttttggttttttgagacagggtttctctgtatagccctttgctctttaa
cagagattctaatagctattttatggtatcctagtgtgccgcccccacac
ttggtatgtatttaggatcctggaaggaaaacactttctaagtactttgc
ctaaatctaaatagaagccagcttctaagaagaacataaggaggaggagc
agtctgattcctccaatccacttcttcccagtgggctgcagtggctagag
aatgagaacagcgaaagcagatgggggggttgggggtgggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10547886_10549032
seq2: B6Ng01-328J12.b_47_1201

seq1  GAATTCCTTTATAGAAGCTTTCTGGAGGAGGCAACACTGTATCAGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATAGAAGCTTTCTGGAGGAGGCAACACTGTATCAGAGATC  50

seq1  CCCTAAATGGGGAAGTGTCATCATAAGGCACAGCCACATTAGGGGCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATGGGGAAGTGTCATCATAAGGCACAGCCACATTAGGGGCACCA  100

seq1  TAGTCAGATTTATGGCCAATCCAGGTAGGAACTCATAGCTATGGGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGATTTATGGCCAATCCAGGTAGGAACTCATAGCTATGGGAAGCA  150

seq1  AGGCTGTGAGAAGAAAGAGGCTTTATCAGACATGGGGGCCAATGAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGAGAAGAAAGAGGCTTTATCAGACATGGGGGCCAATGAACACC  200

seq1  TAACGTTTGTCCAGTCTGGGGTGGGGGTTGGGGAGCAGAACATGGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTTGTCCAGTCTGGGGTGGGGGTTGGGGAGCAGAACATGGGATTT  250

seq1  TCCGTACTGAAACAGGAAAGCCAAGTAAAGCAGAGCAGATCGCCTTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTACTGAAACAGGAAAGCCAAGTAAAGCAGAGCAGATCGCCTTCCCG  300

seq1  GTTACTAAGTGACTGACGGCCCCAGATCCTTTAAAACAGACCCAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAAGTGACTGACGGCCCCAGATCCTTTAAAACAGACCCAAGCCAG  350

seq1  GGAAAGCGTGCATTCATGCATCTCCTGCCGCAGTCTCTAGATCAGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCGTGCATTCATGCATCTCCTGCCGCAGTCTCTAGATCAGGGAGA  400

seq1  CCCAGGATGCATCACCCTGCTGGTCTCCAGGACATCATTGTCCTGATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATGCATCACCCTGCTGGTCTCCAGGACATCATTGTCCTGATGTA  450

seq1  GCAGTCTTGGTGGAATAAGAGGTTAAGATTTTAAGAAAATTGAGAGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTGGTGGAATAAGAGGTTAAGATTTTAAGAAAATTGAGAGTAGG  500

seq1  GTTCTTTAGTTGTTGATTTTATATTTCTTTCTTCAGGGTCACAGAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAGTTGTTGATTTTATATTTCTTTCTTCAGGGTCACAGAGGTGT  550

seq1  AAGGGGGAACAAGTCTTTCTCTGCTCCTGAGTGCTGGAATTACAGACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAACAAGTCTTTCTCTGCTCCTGAGTGCTGGAATTACAGACATA  600

seq1  ATGTGTCTGTATCACATACTGTGTCACTATACCCTACCACTGCTTATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTGTATCACATACTGTGTCACTATACCCTACCACTGCTTATAAG  650

seq1  GCATTCTTTCCTTCACAGCACTTCCATCTTACAAACTGGAAAGAAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTCCTTCACAGCACTTCCATCTTACAAACTGGAAAGAAACTTT  700

seq1  TCTGTTACACACTTTTTGCTAAATAGTGAAAAGCTGTACTTGAATTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACACACTTTTTGCTAAATAGTGAAAAGCTGTACTTGAATTATTT  750

seq1  ACATACCAAGTTTGGTCAGTCACTTAGTTGGGGACAGATGGAACAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAAGTTTGGTCAGTCACTTAGTTGGGGACAGATGGAACAGTCAG  800

seq1  G-TTGTTA-TTCATGACACATCATTGATGGTTCACTGCCAGACTAGTAAC  848
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTATTTCATGACACATCATTGATGGTTCACTGCCAGACTAGTAAC  850

seq1  AAGGC-TGTGACATTAACTGACAAATGTCTACCC-TCAGCAGAATCTCTA  896
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGGCTTGTGACATTAACTGACAAATGTCTACCCTTCAGCAGAATCTCTA  900

seq1  CTTA-TAGAGTCC-TTTGATTGTTACTGAAATGTCATTT--GGAAAGGGG  942
      |||| |||||||| |||||||||||||||||||||||||  | |||||||
seq2  CTTATTAGAGTCCTTTTGATTGTTACTGAAATGTCATTTTGGAAAAGGGG  950

seq1  GCCATTTGC-CCACAAACTG-ATAGAACCTTGG-TTGTTATGTTGTTGTC  989
      |||||||||  ||||||||| |||||||||||| |||||||| |||||||
seq2  GCCATTTGCTTCACAAACTGAATAGAACCTTGGTTTGTTATG-TGTTGTC  999

seq1  TCAATTCTAGTCACTTGATGATGTCAAGATTCTTGGTCCAAGTGATGATC  1039
      || |||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TC-ATTCTAGTCACTTGATGATGTCAAGATTCTTGGTTCAAGTGATGATT  1048

seq1  CTGCTAAATTGCCTTCTGAGCTGGTGGAGTCTATTGGATAGCTCTTGTAA  1089
      |||| ||||||||||||||||| |  ||| |||| | ||| ||| || | 
seq2  CTGCCAAATTGCCTTCTGAGCTTGGTGAGGCTATGGAATA-CTC-TGCAC  1096

seq1  CTGAACGGTGTGTTCTAGCTACACCATAGCAG-AGAGC-GGGTGCTTAGT  1137
      |||||| ||||| ||| ||||||||||||||| | ||| |||||| ||||
seq2  CTGAAC-GTGTGATCT-GCTACACCATAGCAGAATAGCGGGGTGCCTAGT  1144

seq1  TAG-ACGAAGC  1147
      ||| |||||||
seq2  TAGAACGAAGC  1155

seq1: chr16_10654425_10655465
seq2: B6Ng01-328J12.g_67_1109 (reverse)

seq1  CACCCCACCC----CACCCCCATCTGCTTTTCGCCTGTCTTCATTCTCCT  46
      || |||||||    | ||||||||||| ||||| ||||  ||||||| ||
seq2  CAACCCACCCCCAACCCCCCCATCTGC-TTTCG-CTGTTCTCATTCT-CT  47

seq1  AGCCCACTGCAGCCCCACTGGGAAG-AGTGGATTGGAGGAATCAGACTGC  95
      || ||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AG-CCACTGCAG-CCCACTGGGAAGAAGTGGATTGGAGGAATCAGACTGC  95

seq1  TCCCTCCTCC-TATGTTCTTCTTAGAAGCTGGCTTCTATTTAGA-TTAGG  143
      | |||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  T-CCTCCTCCTTATGTTCTTCTTAGAAGCTGGCTTCTATTTAGATTTAGG  144

seq1  CAAAGTACTTAG-AAGTGTTTTCC-TCCAGGATCCTAAATACATACCAAG  191
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CAAAGTACTTAGAAAGTGTTTTCCTTCCAGGATCCTAAATACATACCAAG  194

seq1  TGTGGGGGCGGCACACTAGGATACCATAAAATAGCTATTAGAATCTCTGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGCGGCACACTAGGATACCATAAAATAGCTATTAGAATCTCTGT  244

seq1  TAAAGAGCAAAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAA  291
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAAGAGCAAAGGGCTATACAGAGAAACCCTGTCTCAAAAAACC-AAAAA  293

seq1  AAAAAAAAAAAAAAGAGCAAAGAATGGTTGCCCCTCACAAGACTTAAAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAGCAAAGAATGGTTGCCCCTCACAAGACTTAAAGA  343

seq1  CTCCCAGGTGAGGCTCTCTGTTGTCTCAGTCACCAGTGTAACATGTAGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTGAGGCTCTCTGTTGTCTCAGTCACCAGTGTAACATGTAGCA  393

seq1  AACACAGTAGATAGTCACCAAGTTTTCAAGAGAATGTCAAATGTTTCTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTAGATAGTCACCAAGTTTTCAAGAGAATGTCAAATGTTTCTTG  443

seq1  CTCTACTGTTTTTAAGAAGTATCTACAGAACTGGAGCTCAGGTGGTAAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGTTTTTAAGAAGTATCTACAGAACTGGAGCTCAGGTGGTAAGA  493

seq1  TGTCTAGCGAGCACAAAGATATCCTCTTGCCTCTCCTGAGTGTTCCCATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGCGAGCACAAAGATATCCTCTTGCCTCTCCTGAGTGTTCCCATT  543

seq1  CAGTGCTCAGGGCCACTTCCAGGAAGAGAAACCCATGCTGCACCCAACAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAGGGCCACTTCCAGGAAGAGAAACCCATGCTGCACCCAACAG  593

seq1  CTTTCTCTGAGTGTACCCTCAGAACTTGGGACAGGGAGACAGGACGATCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGAGTGTACCCTCAGAACTTGGGACAGGGAGACAGGACGATCA  643

seq1  CGACATGAAACCATGTCTGAGAATGGAGAGCAAGAGAAATATACAAAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATGAAACCATGTCTGAGAATGGAGAGCAAGAGAAATATACAAAATA  693

seq1  CTGAACTTGGAATACTTCAATGCTTAAATTGTCATTTCTACTTTTATTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGGAATACTTCAATGCTTAAATTGTCATTTCTACTTTTATTTG  743

seq1  CCTGGAAATAGAAGTGACTTGGTTTCTCACAGTACCCTAGTGTGCAGAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATAGAAGTGACTTGGTTTCTCACAGTACCCTAGTGTGCAGAGC  793

seq1  TGCTGTGGAGCATGGAGTCCACCCCTGACCTGTCAGCTAGGGCAAGGCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGAGCATGGAGTCCACCCCTGACCTGTCAGCTAGGGCAAGGCAG  843

seq1  ATGGAGGGAGGCTAGCAGTTCTGAGTTAGCCAGAGCTGGGGCCATCAGCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAGGCTAGCAGTTCTGAGTTAGCCAGAGCTGGGGCCATCAGCT  893

seq1  CTAAGTTCAGAGCTCTCTGGAGCCAAGCCTGACATCTGAATGCCTTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTCAGAGCTCTCTGGAGCCAAGCCTGACATCTGAATGCCTTCTAG  943

seq1  AGGATCCCATTGCAGAACCAGGATTGGGAACCATGGTATTAGGTAAAGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCATTGCAGAACCAGGATTGGGAACCATGGTATTAGGTAAAGTG  993

seq1  AGGAAGGTTCTAGAACTCGGCACTTAGTCTTCACTACTCTCTGTGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTCTAGAACTCGGCACTTAGTCTTCACTACTCTCTGTGAATTC  1043