BAC Information

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BAC

Clone NameB6Ng01-329L21
Chromosome16 (Build37)
Map Location 78,827,436 - 78,880,190
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329L21.bB6Ng01-329L21.g
ACCGA116615GA116616
length1,1311,103
definitionB6Ng01-329L21.b B6Ng01-329L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,827,436 - 78,828,568)(78,879,091 - 78,880,190)
sequence
gaattccttcctcatcctacagaatactgagattaaaagtgtgagcttcc
atctctggcctaagtgaagacatatttgcagagactttgtcaggttattt
aatacacatgtcagtccttggactgtactctaattttgtgtcattcatca
accaactgatccaattactgactataaataatggaggttatgtgattatc
caaatgctatgttacactatgtattaattttgagcatttagttggcccct
gggtcgtttatctgaggttagtgttaagcctcagtttctgactttgcaac
cttggagaccagactccaaatcaaggttaattacacctggatcgtgtcgt
tctggaaaacaatttaatttgaaggttgttcttactattcttgtcctttc
cctccttttgtttcctctttttctcctccaccctgttcaccctctctctc
ttttctgtcttttcctctcttgctctcttacatttttttatctgtaacac
cacagttcaaatttgtgctaagcaattaccttctcagtaacctataccaa
agcccattccacccccccccccttcttaactttctgccatcagttttctg
ttccaagaattctttaatgtggagttcccccatgttcaaatgttcttttc
ctattacgtatgtagtcaggtctgccaggacagtcatcaggctgactcta
tctggctcaatgcctaaagcagcgcatgctagactgagctggctttctgg
gttccatttgcatttgaaagccactggatgcttaagtgctttgtggatct
ctctgctcaggctgctcagatgtggccctttctgtgggtttagataacca
gtataaacaaatagctgaaggagagaaacattaccacccgttagttaaga
ttcaactaaaactgaaggaatcagcacttctcaaagctcaattaagtcaa
ccatctcctcttctgtgtgtgttcactctcagtggagagagctgattgac
ttataggaagtcctagagggaaacactttataaatgacagatgagaagca
taaatattctatttgtcatgacattagtgctgagaagtcagcttcagggt
aagccaccctgattatttcctcttatctata

gaattctcaccaggtatggctttccaaatacaaatgcttttagtcctctg
ttgacaacactgtgcaagcatatatatatatatatatatatatatatatt
tgatttagtttttattccacatcaaaccctgcagtcatagggtttttatt
tgcattatccttggtctgttgttgtatttacaaccttgcttggattcata
cgagaaatattaaagactcgatgtattttgtattatcagtgaccatatca
aaggcttaagacagtccagcatcttaaagcatatcttcttctagcaataa
cttattcaaaagagctatgaatattctcccataaaatacatgactgatac
tgaccaataataccaccaaatgacatgggaatgataaatatccgaaatat
aacctatctcttggtaatgatttcccccatattttaaatttttactatct
gaatgccataggatatacattttcccaatctgcgaagttgctattctttg
tatagaagttgatcatttcacactcaaagctcaacaacaagattaaatgt
tggaaaaaaatcaagaattacaatgcagaactagctaaaacagaatgtag
agggatatttctttaaagaatccaaacatatcaacacaataatatgcctg
agttctgaatctgaaaaagaatcggtgtcctgtgaatgcaaatgtaacat
tacaaatgtccttaaaaatctctttttcaaatgtgcctcctgtctcctta
caaataagtatatgaaagagtctctcaaaggaagatgaagtccatttttt
ttatattttgttataaaccacaggatgcctttcttttttaaaatgctcat
taagttgtacaaacttcctgtgaagaaatatttgccaatttaaaatttct
aaaaagtgaaaacttcttgaagttataggaaaaccttcatgatctagatc
tacaaattatgtaaaatgtttgctttaaaagcagagaatctcagttctta
ggtggatatttttatttggcatattgcttttcatacaattggactttcta
ttagcaaccagtaatactaatagcaattgtaatcctccatatttcttaac
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78827436_78828568
seq2: B6Ng01-329L21.b_43_1173

seq1  GAATTCCTTCCTCATCCTACAGAATACTGAGATTAAAAGTGTGAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCATCCTACAGAATACTGAGATTAAAAGTGTGAGCTTCC  50

seq1  ATCTCTGGCCTAAGTGAAGACATATTTGCAGAGACTTTGTCAGGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCCTAAGTGAAGACATATTTGCAGAGACTTTGTCAGGTTATTT  100

seq1  AATACACATGTCAGTCCTTGGACTGTACTCTAATTTTGTGTCATTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACATGTCAGTCCTTGGACTGTACTCTAATTTTGTGTCATTCATCA  150

seq1  ACCAACTGATCCAATTACTGACTATAAATAATGGAGGTTATGTGATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGATCCAATTACTGACTATAAATAATGGAGGTTATGTGATTATC  200

seq1  CAAATGCTATGTTACACTATGTATTAATTTTGAGCATTTAGTTGGCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTATGTTACACTATGTATTAATTTTGAGCATTTAGTTGGCCCCT  250

seq1  GGGTCGTTTATCTGAGGTTAGTGTTAAGCCTCAGTTTCTGACTTTGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGTTTATCTGAGGTTAGTGTTAAGCCTCAGTTTCTGACTTTGCAAC  300

seq1  CTTGGAGACCAGACTCCAAATCAAGGTTAATTACACCTGGATCGTGTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGACCAGACTCCAAATCAAGGTTAATTACACCTGGATCGTGTCGT  350

seq1  TCTGGAAAACAATTTAATTTGAAGGTTGTTCTTACTATTCTTGTCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAACAATTTAATTTGAAGGTTGTTCTTACTATTCTTGTCCTTTC  400

seq1  CCTCCTTTTGTTTCCTCTTTTTCTCCTCCACCCTGTTCACCCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTGTTTCCTCTTTTTCTCCTCCACCCTGTTCACCCTCTCTCTC  450

seq1  TTTTCTGTCTTTTCCTCTCTTGCTCTCTTACATTTTTTTATCTGTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTCTTTTCCTCTCTTGCTCTCTTACATTTTTTTATCTGTAACAC  500

seq1  CACAGTTCAAATTTGTGCTAAGCAATTACCTTCTCAGTAACCTATACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCAAATTTGTGCTAAGCAATTACCTTCTCAGTAACCTATACCAA  550

seq1  AGCCCATTCCACCCCCCCCCCCTTCTTAACTTTCTGCCATCAGTTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTCCACCCCCCCCCCCTTCTTAACTTTCTGCCATCAGTTTTCTG  600

seq1  TTCCAAGAATTCTTTAATGTGGAGTTCCCCCATGTTCAAATGTTCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAATTCTTTAATGTGGAGTTCCCCCATGTTCAAATGTTCTTTTC  650

seq1  CTATTACGTATGTAGTCAGGTCTGCCAGGACAGTCATCAGGCTGACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACGTATGTAGTCAGGTCTGCCAGGACAGTCATCAGGCTGACTCTA  700

seq1  TCTGGCTCAATGCCTAAAGCAGCGCATGCTAGACTGAGCTGGCTTTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCAATGCCTAAAGCAGCGCATGCTAGACTGAGCTGGCTTTCTGG  750

seq1  GTTCCATTTGCATTTGAAAGCCACTGGATGCTTAAGTGCTTTGTGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTGCATTTGAAAGCCACTGGATGCTTAAGTGCTTTGTGGATCT  800

seq1  CTCTGCTCAGGCTGCTCAGATGTGGCCCTTTCTGTGGGTTTAGATAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCAGGCTGCTCAGATGTGGCCCTTTCTGTGGGTTTAGATAACCA  850

seq1  GTATAAACAAATAGCTGAAGGAGAGAAACATTACCACCCGTTAGTTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACAAATAGCTGAAGGAGAGAAACATTACCACCCGTTAGTTAAGA  900

seq1  TTCAACTAAAACTGAAGGAATCAGCACTTCTCAAAGCTCAATTAAGTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAAAACTGAAGGAATCAGCACTTCTCAAAGCTCAATTAAGTCAA  950

seq1  CCATCTCCTCTTCTGTGTTGTGTTCACTCTCAGTGGAGAGAGCTGATTGA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATCTCCTCTTCTGTG-TGTGTTCACTCTCAGTGGAGAGAGCTGATTGA  999

seq1  CTTATAGGAAGTCCTAGAGGGAAACACTTTATAAATGAACAGAATGAGAA  1050
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  CTTATAGGAAGTCCTAGAGGGAAACACTTTATAAATG-ACAG-ATGAGAA  1047

seq1  GCATAAATATTCTATTTGTCATGACATTAAGTGCTGAGAGTTCAGCTTCC  1100
      |||||||||||||||||||||||||||| ||||||||||  ||||||| |
seq2  GCATAAATATTCTATTTGTCATGACATT-AGTGCTGAGAAGTCAGCTT-C  1095

seq1  AGGTTAAG-CACCCTGAATTATT--CTC-TATCTATA  1133
      ||| |||| ||||||| ||||||  ||| ||||||||
seq2  AGGGTAAGCCACCCTG-ATTATTTCCTCTTATCTATA  1131


seq1: chr16_78879091_78880190
seq2: B6Ng01-329L21.g_65_1167 (reverse)

seq1  TATG-TAAGAAATAT-GAAGATAAC-ATTGCTATTAGTATTACT-GTTGC  46
      |||| |||||||||| || ||| || |||||||||||||||||| |||||
seq2  TATGTTAAGAAATATGGAGGATTACAATTGCTATTAGTATTACTGGTTGC  50

seq1  TAATAGAAAGTCAAATTGTAATGAAAAGCAATAATGCCAAAT-AAAATAT  95
      |||||||||||| |||||| |||||||||||| ||||||||| |||||||
seq2  TAATAGAAAGTCCAATTGT-ATGAAAAGCAAT-ATGCCAAATAAAAATAT  98

seq1  CCAACCTAAGAACTGAGATTCTCTGCTTTTTAAGCAAACATTTTACATAA  145
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CC-ACCTAAGAACTGAGATTCTCTGCTTTTAAAGCAAACATTTTACATAA  147

seq1  TTTTGTAGATCTAGATCATGAAGGTTTTCCTATAACTTCAAG-AGTTTTC  194
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -TTTGTAGATCTAGATCATGAAGGTTTTCCTATAACTTCAAGAAGTTTTC  196

seq1  ACTTTTTAGAAATTTTAAATTGGCAAATATTTCTTCACAGGAAGTTTGTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGAAATTTTAAATTGGCAAATATTTCTTCACAGGAAGTTTGTA  246

seq1  CAACTTAATGAGCATTTTAAAAAAGAAAGGCATCCTGTGGTTTATAACAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAATGAGCATTTTAAAAAAGAAAGGCATCCTGTGGTTTATAACAA  296

seq1  AATAT-AAAAAAATGGACTTCATCTTCCTTTGAGAGACTCTTTCATATAC  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAAAAATGGACTTCATCTTCCTTTGAGAGACTCTTTCATATAC  346

seq1  TTATTTGTAAGGAGACAGGAGGCACATTTGAAAAAGAGATTTTTAAGGAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAAGGAGACAGGAGGCACATTTGAAAAAGAGATTTTTAAGGAC  396

seq1  ATTTGTAATGTTACATTTGCATTCACAGGACACCGATTCTTTTTCAGATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAATGTTACATTTGCATTCACAGGACACCGATTCTTTTTCAGATT  446

seq1  CAGAACTCAGGCATATTATTGTGTTGATATGTTTGGATTCTTTAAAGAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGGCATATTATTGTGTTGATATGTTTGGATTCTTTAAAGAAA  496

seq1  TATCCCTCTACATTCTGTTTTAGCTAGTTCTGCATTGTAATTCTTGATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCTACATTCTGTTTTAGCTAGTTCTGCATTGTAATTCTTGATTT  546

seq1  TTTTCCAACATTTAATCTTGTTGTTGAGCTTTGAGTGTGAAATGATCAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAACATTTAATCTTGTTGTTGAGCTTTGAGTGTGAAATGATCAAC  596

seq1  TTCTATACAAAGAATAGCAACTTCGCAGATTGGGAAAATGTATATCCTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACAAAGAATAGCAACTTCGCAGATTGGGAAAATGTATATCCTAT  646

seq1  GGCATTCAGATAGTAAAAATTTAAAATATGGGGGAAATCATTACCAAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAGATAGTAAAAATTTAAAATATGGGGGAAATCATTACCAAGAG  696

seq1  ATAGGTTATATTTCGGATATTTATCATTCCCATGTCATTTGGTGGTATTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATATTTCGGATATTTATCATTCCCATGTCATTTGGTGGTATTA  746

seq1  TTGGTCAGTATCAGTCATGTATTTTATGGGAGAATATTCATAGCTCTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGTATCAGTCATGTATTTTATGGGAGAATATTCATAGCTCTTTT  796

seq1  GAATAAGTTATTGCTAGAAGAAGATATGCTTTAAGATGCTGGACTGTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTTATTGCTAGAAGAAGATATGCTTTAAGATGCTGGACTGTCTT  846

seq1  AAGCCTTTGATATGGTCACTGATAATACAAAATACATCGAGTCTTTAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTGATATGGTCACTGATAATACAAAATACATCGAGTCTTTAATA  896

seq1  TTTCTCGTATGAATCCAAGCAAGGTTGTAAATACAACAACAGACCAAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGTATGAATCCAAGCAAGGTTGTAAATACAACAACAGACCAAGGA  946

seq1  TAATGCAAATAAAAACCCTATGACTGCAGGGTTTGATGTGGAATAAAAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAATAAAAACCCTATGACTGCAGGGTTTGATGTGGAATAAAAAC  996

seq1  TAAATCAAATATATATATATATATATATATATATATATGCTTGCACAGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAATATATATATATATATATATATATATATATGCTTGCACAGTG  1046

seq1  TTGTCAACAGAGGACTAAAAGCATTTGTATTTGGAAAGCCATACCTGGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACAGAGGACTAAAAGCATTTGTATTTGGAAAGCCATACCTGGTG  1096

seq1  AGAATTC  1100
      |||||||
seq2  AGAATTC  1103


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