BAC Information

Click to search

BAC

Clone NameB6Ng01-329N06
Chromosome3 (Build37)16 (Build37)
Map Location 43,134,915 - 43,136,08654,336,355 - 54,336,608
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N06.bB6Ng01-329N06.g
ACCGA116681GA116682
length1,154337
definitionB6Ng01-329N06.b B6Ng01-329N06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,134,915 - 43,136,086)(54,336,355 - 54,336,608)
sequence
gaattcaatctacaacagggtggactcatgtccaagctatagattgagga
aattgcatcagtgatgactatctttctttaaacaccacaccattctaatc
taaaatgcatacaacagaaagattttcctgaacctctgagggacgtggag
tgtgcttataagatataagtgttgtagtaaatacttaattcaattgggag
tctttattctgatagatcattcagttcccagataaaagacactcaacttt
tatattattaattagcactagagctgggcaactatcaatactttatgcta
ttttgtttacttgcctgtcaataaccccaaaatatgacttgttctattcc
acctatgtcactcttactcctactggccagccatcatggttagttcttac
aatcccatggtatctacttcttgctatcttctctctattcttcctcatgg
ccctgcctcagaccctaatcctgggaacaaaaatgccacccacctctttt
ctgatgagctataggctataggcatctttattcaaccaatagttctacat
taaggagcaaggttacatagtatcatttgttgtaggtgaagatttctcat
cccaggggacactcagaccagattgttataccatttagcattacagtaaa
acaaatattaatagttaaatgattactcccttagatttccactatgtttg
tgggaaattttttccaataacaatgataacatagaacatgttgaactgcc
ctcatatttaattggaaaatttacagtatttgaatcccccaccccacatt
ttaatacccacaactatcagcatctctttgttattataaatgaaccaatt
aatatatttgattaaaacccctacctcaccttagggatattatctattta
attacttaaggttcacagttaagtcttcatttttccccactactattact
tccttagcatctacaaacaagtgctaaacaccattatattctcaatgata
ttaacatgaagcctactggctagctacaggagggtttttttatgaaattt
ttgactcatgtacatttatctagctggtaatatttgaacatattttagtg
taagtagtgtcaagcctcatgcataaacttcaacaggaaccatttctcag
taga

tttccttgctccatagcctcatcagcatgaaatgccacttgttttattga
tcttggccattctgtctactattagatgaaatctcaaagtagtttttatt
tgaatttctctgatagcttaacttttccttaagcatttcacatccacttc
aatttcccactttgagatttcctttaaatgtagaccccaattttttaatc
aggctatttattttcttgataaataggttttgttttgtttgtttgtgtgt
gtgtgtgtgtatgtgtgtgtatatgtgagtgagttagtgtgtgtgtgtgt
gtgtgtgtgtgtgagtgattgtgtgtgtgtgtgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_43134915_43136086
seq2: B6Ng01-329N06.b_46_1199

seq1  GAATTCAATCTACAACAGGGTGGACTCATGTCCAAGCTATAGATTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTACAACAGGGTGGACTCATGTCCAAGCTATAGATTGAGGA  50

seq1  AATTGCATCAGTGATGACTATCTTTCTTTAAACACCACACCATTCTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATCAGTGATGACTATCTTTCTTTAAACACCACACCATTCTAATC  100

seq1  TAAAATGCATACAACAGAAAGATTTTCCTGAACCTCTGAGGGACGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCATACAACAGAAAGATTTTCCTGAACCTCTGAGGGACGTGGAG  150

seq1  TGTGCTTATAAGATATAAGTGTTGTAGTAAATACTTAATTCAATTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTATAAGATATAAGTGTTGTAGTAAATACTTAATTCAATTGGGAG  200

seq1  TCTTTATTCTGATAGATCATTCAGTTCCCAGATAAAAGACACTCAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTCTGATAGATCATTCAGTTCCCAGATAAAAGACACTCAACTTT  250

seq1  TATATTATTAATTAGCACTAGAGCTGGGCAACTATCAATACTTTATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATTAATTAGCACTAGAGCTGGGCAACTATCAATACTTTATGCTA  300

seq1  TTTTGTTTACTTGCCTGTCAATAACCCCAAAATATGACTTGTTCTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTACTTGCCTGTCAATAACCCCAAAATATGACTTGTTCTATTCC  350

seq1  ACCTATGTCACTCTTACTCCTACTGGCCAGCCATCATGGTTAGTTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTCACTCTTACTCCTACTGGCCAGCCATCATGGTTAGTTCTTAC  400

seq1  AATCCCATGGTATCTACTTCTTGCTATCTTCTCTCTATTCTTCCTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATGGTATCTACTTCTTGCTATCTTCTCTCTATTCTTCCTCATGG  450

seq1  CCCTGCCTCAGACCCTAATCCTGGGAACAAAAATGCCACCCACCTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCAGACCCTAATCCTGGGAACAAAAATGCCACCCACCTCTTTT  500

seq1  CTGATGAGCTATAGGCTATAGGCATCTTTATTCAACCAATAGTTCTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGCTATAGGCTATAGGCATCTTTATTCAACCAATAGTTCTACAT  550

seq1  TAAGGAGCAAGGTTACATAGTATCATTTGTTGTAGGTGAAGATTTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCAAGGTTACATAGTATCATTTGTTGTAGGTGAAGATTTCTCAT  600

seq1  CCCAGGGGACACTCAGACCAGATTGTTATACCATTTAGCATTACAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGACACTCAGACCAGATTGTTATACCATTTAGCATTACAGTAAA  650

seq1  ACAAATATTAATAGTTAAATGATTACTCCCTTAGATTTCCACTATGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTAATAGTTAAATGATTACTCCCTTAGATTTCCACTATGTTTG  700

seq1  TGGGAAATTTTTTCCAATAACAATGATAACATAGAACATGTTGAACTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTTTTTCCAATAACAATGATAACATAGAACATGTTGAACTGCC  750

seq1  CTCATATTTAATTGGAAAATTTACAGTATTTGAATCCCCCACCCCACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTAATTGGAAAATTTACAGTATTTGAATCCCCCACCCCACATT  800

seq1  TTAATACCCACAACTATCAGCATCTCTTTGTTATTATAAATGAACCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCCACAACTATCAGCATCTCTTTGTTATTATAAATGAACCAATT  850

seq1  AATATATTTGATTAAAACCCCTACCTCACCTTAGGGATATTATCTATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTGATTAAAACCCCTACCTCACCTTAGGGATATTATCTATTTA  900

seq1  ATTACTTAAGGTTCACAGTTAAGTCTTCATTTTTCCCCACTACTATTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAAGGTTCACAGTTAAGTCTTCATTTTTCCCCACTACTATTACT  950

seq1  TCCTTAGCATCTACAAACAAGTGCTAAACACCATTATATTCTCAAATGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCTTAGCATCTACAAACAAGTGCTAAACACCATTATATTCTC-AATGAT  999

seq1  ATTAACATGAAGCCTACTGGCTAGCTACCAAGAGGGTTTTTTTTATGAAA  1050
      ||||||||||||||||||||||||||| || ||||| |||||||||||||
seq2  ATTAACATGAAGCCTACTGGCTAGCTA-CAGGAGGG-TTTTTTTATGAAA  1047

seq1  TTTTTGACTTCATGTACAATTTAATCTAGCTGGTAATATTTGAAACATAT  1100
      |||||||| |||||||||  || ||||||||||||||||||| |||||||
seq2  TTTTTGAC-TCATGTACA--TTTATCTAGCTGGTAATATTTG-AACATAT  1093

seq1  TTTAGGTTGTAAGGTAGTGTCCCAGGCCTCATGCATAAACTTCCACACAG  1150
      |||||  ||||| |||||||  || ||||||||||||||||||   ||||
seq2  TTTAG--TGTAA-GTAGTGT--CAAGCCTCATGCATAAACTTC--AACAG  1136

seq1  GAGACACAATTTTCTCAGTAGA  1172
      ||  ||    ||||||||||||
seq2  GAACCA----TTTCTCAGTAGA  1154


seq1: chr16_54336355_54336608
seq2: B6Ng01-329N06.g_311_408 (reverse)

seq1  AAAACACACACACACACACACACACACACACACACACACACACACTCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCACATACACACACACACACTCTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCACACACACACACACACACTCTCTCTCTCT  150
                           | |||||||||||||||            
seq2  --------------------AAAACACACACACACACA------------  18

seq1  CTCTCTCACACACACACACACACACACACACACTCTCTCTCTCTCTCTCT  200
       || ||||||||||||||||||||||||||||        ||  ||| ||
seq2  ATCACTCACACACACACACACACACACACACA--------CTAACTCACT  60

seq1  CACACACACACACACACTCTCTCTCTCTCTCTCTCACACACACACACACA  250
      |||| | |||||||||                  ||||||||||||||||
seq2  CACATATACACACACA----------------TACACACACACACACACA  94

seq1  AACA  254
      ||||
seq2  AACA  98


| Home | SequenceCutter | Blast | Download |