BAC Information

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BAC

Clone NameB6Ng01-329N19
Chromosome16 (Build37)
Map Location 42,593,026 - 42,719,347
singlet/doubletdoublet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N19.bB6Ng01-329N19.g
ACCGA116707GA116708
length1,0921,120
definitionB6Ng01-329N19.b B6Ng01-329N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,593,026 - 42,594,121)(42,718,234 - 42,719,347)
sequence
gaattccaggacagctaaagctacatgatgacacccagtctccagttata
gaaagaatatcttgagtctcaaggagctcccctctaagaccaatggtttc
atctgggaggaaattgctacacaacaccctgatagccctccttgtaaggt
aagttgtgaaatgcaggttttaccctaagtcccagaataaacatcttgct
tttgaagcagggaagtaaatattagatggcaacggacattctccattggg
agaaaaggaagactactctgaaaacactgacacaggctctcagagaatgc
tctaccctagtagcaccagtagtgactgtagaggaaacccactggctgtg
agggttctccaggcagctcaaggttgggcctagattctgtagccagctct
gtgctaggtgcctggagcccagagctggctctgcgctgtgtgtctggtca
tcgtggaaagtgttgttaaatgagttggaatcatttctgctccagcactc
aacaagccaccgggtactgcaggagaccagaacggaaggctgaactgtcc
ttggcagaacaaataaccaatgaggggtttggaaattagaaatggacaca
ttctcgacaccccatacctccttcccctaccatagccactttcaccaacg
taatccagagatgctctgaatagcacaggatcggaggtaggcaggtaggc
agtagctgacctcactccagcaaaggagggcagcttagcaacccatggtc
atagcttcagagaaagggtaagggactctaaggttaggaagctcacacag
cattgtccttccacccttgctagtgtgctgaggagcaaaagacccttcag
aaacacaaagtatgctatgcagcagaaccaggaccatgttgctgcttctg
ggtcaatgcatcagaccccaagccatgcaaaccgtgaacatagcagaagt
gagtttaggaaatctgaaccagatccggaagccaggaaccctgatatgcc
tgggagggctgcatgggtcgcagagtttgtgacagatgagttcggtgtcc
tgacagtagagctgaaataaacaagggtgttggctcctctgt
gaattcttgttctaactaagcaaggttctgagaaaagaaaagaaaaaaaa
gatattaatctgagcattgatctcatttggcttttgttttaggaaaatct
gtttcacatcactcttgtacctttctattggtaaagtacaggagaaatta
tcttcaaggctaccaggtaacctcttttggccctgggatagaaacctcaa
gaatatgacatgacatagattggaggcaggaacattggcagtgaaatgca
tcctgggacaattagggaaggaagggtcatgaaaaagcaaagagaactca
accaacaggtctcaagaaagagcaagctagtgttgatttttctgccagtg
tgcagtcactcactgaggtcacacctgaggtgaagtccagtatcaccaac
tattttagcattctgtatctgaaactgtgcagtaggaagagccccaagtt
gaaacatgacctcttctcgaacagcaccacaccctccatttcggtgcctc
tacaggaataagcacgatcatttcttctgcttgacaagtgtgatccacaa
atctctaaagaattctactgtgctaaatattcacgagggtgtctgacggg
gtaaggctagggagattacgcagatacagaagagagccaggcaagacata
taaaatgtgttcttgttcacgttgacaaaacaggaaggaagttcactcat
atatatgaagattttactgggacttatgggtaaaataaatttaacatcct
gattattaacatttttggcactaattccaacaaacaataagattacagag
acagtgttgtgtggctcataacaacatgattcccttcctatttaacttca
ttttacttaaaacatttttttttttttttgcgtaaaggtatttgggagaa
agtatttctgttttcctagtgagagagaggccccacccctttcttcatgg
tgtgatgatttcagtccaacgcatccagttttcttggaaatgggcaagtg
aagacacctgtgccatggtgaattgttaatagttctgactcagaattata
gtgtgcatagcaactgccatgaggccttgggaggtggatgcagttctctc
ttctctctctctcttctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42593026_42594121
seq2: B6Ng01-329N19.b_46_1137

seq1  GAATTCCAGGACAGCTAAAGCTACATGATGACACCCAGTCTCCAGTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCTAAAGCTACATGATGACACCCAGTCTCCAGTTATA  50

seq1  GAAAGAATATCTTGAGTCTCAAGGAGCTCCCCTCTAAGACCAATGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATCTTGAGTCTCAAGGAGCTCCCCTCTAAGACCAATGGTTTC  100

seq1  ATCTGGGAGGAAATTGCTACACAACACCCTGATAGCCCTCCTTGTAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGGAAATTGCTACACAACACCCTGATAGCCCTCCTTGTAAGGT  150

seq1  AAGTTGTGAAATGCAGGTTTTACCCTAAGTCCCAGAATAAACATCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGAAATGCAGGTTTTACCCTAAGTCCCAGAATAAACATCTTGCT  200

seq1  TTTGAAGCAGGGAAGTAAATATTAGATGGCAACGGACATTCTCCATTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAGGGAAGTAAATATTAGATGGCAACGGACATTCTCCATTGGG  250

seq1  AGAAAAGGAAGACTACTCTGAAAACACTGACACAGGCTCTCAGAGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAGACTACTCTGAAAACACTGACACAGGCTCTCAGAGAATGC  300

seq1  TCTACCCTAGTAGCACCAGTAGTGACTGTAGAGGAAACCCACTGGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTAGTAGCACCAGTAGTGACTGTAGAGGAAACCCACTGGCTGTG  350

seq1  AGGGTTCTCCAGGCAGCTCAAGGTTGGGCCTAGATTCTGTAGCCAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTCCAGGCAGCTCAAGGTTGGGCCTAGATTCTGTAGCCAGCTCT  400

seq1  GTGCTAGGTGCCTGGAGCCCAGAGCTGGCTCTGCGCTGTGTGTCTGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGTGCCTGGAGCCCAGAGCTGGCTCTGCGCTGTGTGTCTGGTCA  450

seq1  TCGTGGAAAGTGTTGTTAAATGAGTTGGAATCATTTCTGCTCCAGCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGAAAGTGTTGTTAAATGAGTTGGAATCATTTCTGCTCCAGCACTC  500

seq1  AACAAGCCACCGGGTACTGCAGGAGACCAGAACGGAAGGCTGAACTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCACCGGGTACTGCAGGAGACCAGAACGGAAGGCTGAACTGTCC  550

seq1  TTGGCAGAACAAATAACCAATGAGGGGTTTGGAAATTAGAAATGGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAACAAATAACCAATGAGGGGTTTGGAAATTAGAAATGGACACA  600

seq1  TTCTCGACACCCCATACCTCCTTCCCCTACCATAGCCACTTTCACCAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGACACCCCATACCTCCTTCCCCTACCATAGCCACTTTCACCAACG  650

seq1  TAATCCAGAGATGCTCTGAATAGCACAGGATCGGAGGTAGGCAGGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGAGATGCTCTGAATAGCACAGGATCGGAGGTAGGCAGGTAGGC  700

seq1  AGTAGCTGACCTCACTCCAGCAAAGGAGGGCAGCTTAGCAACCCATGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGACCTCACTCCAGCAAAGGAGGGCAGCTTAGCAACCCATGGTC  750

seq1  ATAGCTTCAGAGAAAGGGTAAGGGACTCTAAGGTTAGGAAGCTCACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCAGAGAAAGGGTAAGGGACTCTAAGGTTAGGAAGCTCACACAG  800

seq1  CATTGTCCTTCCACCCTTGCTAGTGTGCTGAGGAGCAAAAGACCCTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTTCCACCCTTGCTAGTGTGCTGAGGAGCAAAAGACCCTTCAG  850

seq1  AAACACAAAGTATGCTATGCAGCAGAACCAGGACCATGTTGCTGCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAGTATGCTATGCAGCAGAACCAGGACCATGTTGCTGCTTCTG  900

seq1  GGTCAATGCATCAGACCCCAAGCCATGCAAACCGTGAACATAGCAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGCATCAGACCCCAAGCCATGCAAACCGTGAACATAGCAGAAGT  950

seq1  GAGTTTAGGAAATCTGAACCAGATCCGGAAGCCAGGAACCCTGATATTGC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTTTAGGAAATCTGAACCAGATCCGGAAGCCAGGAACCCTGATA-TGC  999

seq1  CTGGGAGGGGCTGCATGGGTCGCAGGAAGTTTGTGACAGAATGAGGTTCG  1050
      |||||| ||||||||||||||||||  |||||||||||| |||| |||||
seq2  CTGGGA-GGGCTGCATGGGTCGCAG--AGTTTGTGACAG-ATGA-GTTCG  1044

seq1  GTGTCCTGACAGTAGAGCTGAAATAAAC-AGGGTGTTGGCT-CTCTGT  1096
      |||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GTGTCCTGACAGTAGAGCTGAAATAAACAAGGGTGTTGGCTCCTCTGT  1092

seq1: chr16_42718234_42719347
seq2: B6Ng01-329N19.g_65_1184 (reverse)

seq1  GTGAGAGAGAGAGAGAGAGAGAGAGAG-ACTGCA-CCACCTCCCAAGGGC  48
      |||||| ||||||||||||| |||||| |||||| ||||||||||| |||
seq2  GTGAGA-AGAGAGAGAGAGA-AGAGAGAACTGCATCCACCTCCCAA-GGC  47

seq1  TTCAATGCAGTTGCTATGGCAACACTATA--TCTGAGTCAGAACTATTAA  96
       |||  ||||||||||||   ||||||||  |||||||||||||||||||
seq2  CTCATGGCAGTTGCTATG--CACACTATAATTCTGAGTCAGAACTATTAA  95

seq1  CAA-TCACCATGGCAACAAGTGTC-TCACTTG-CCATTTCCA--GAAACT  141
      ||| |||||||||| ||| ||||| ||||||| |||||||||   |||||
seq2  CAATTCACCATGGC-ACAGGTGTCTTCACTTGCCCATTTCCAAGAAAACT  144

seq1  GGATGCGTTTGGACTGAAATCATCACACCATGAAGAAAGGGGTGGGGCCT  191
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCG-TTGGACTGAAATCATCACACCATGAAGAAAGGGGTGGGGCCT  193

seq1  CTCTCTCACTAGG-AAACAGAAATACTTTCT-CCAAATACC-TTACGC--  236
      ||||||||||||| ||||||||||||||||| ||||||||| ||||||  
seq2  CTCTCTCACTAGGAAAACAGAAATACTTTCTCCCAAATACCTTTACGCAA  243

seq1  AAAAAAAAAAAAATGTTTTAAGTAAAATGAAGTTAAATAGGAAGGGAATC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATGTTTTAAGTAAAATGAAGTTAAATAGGAAGGGAATC  293

seq1  ATGTTGTTATGAGCCACACAACACTGTCTCTGTAATCTTATTGTTTGTTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTATGAGCCACACAACACTGTCTCTGTAATCTTATTGTTTGTTG  343

seq1  GAATTAGTGCCAAAAATGTTAATAATCAGGATGTTAAATTTATTTTACCC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTGCCAAAAATGTTAATAATCAGGATGTTAAATTTATTTTACCC  393

seq1  ATAAGTCCCAGTAAAATCTTTCATATATATGAGTGAACTTCCTTCCTGTT  436
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAAGTCCCAGTAAAATC-TTCATATATATGAGTGAACTTCCTTCCTGTT  442

seq1  TTGTCAACGTGAACAAGAACACATTTTATATGTCTTGCCTGGCTCTCTTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACGTGAACAAGAACACATTTTATATGTCTTGCCTGGCTCTCTTC  492

seq1  TGTATCTGCGTAATCTCCCTAGCCTTACCCCGTCAGACACCCTCGTGAAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGCGTAATCTCCCTAGCCTTACCCCGTCAGACACCCTCGTGAAT  542

seq1  ATTTAGCACAGTAGAATTCTTTAGAGATTTGTGGATCACACTTGTCAAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCACAGTAGAATTCTTTAGAGATTTGTGGATCACACTTGTCAAGC  592

seq1  AGAAGAAATGATCGTGCTTATTCCTGTAGAGGCACCGAAATGGAGGGTGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATGATCGTGCTTATTCCTGTAGAGGCACCGAAATGGAGGGTGT  642

seq1  GGTGCTGTTCGAGAAGAGGTCATGTTTCAACTTGGGGCTCTTCCTACTGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTTCGAGAAGAGGTCATGTTTCAACTTGGGGCTCTTCCTACTGC  692

seq1  ACAGTTTCAGATACAGAATGCTAAAATAGTTGGTGATACTGGACTTCACC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCAGATACAGAATGCTAAAATAGTTGGTGATACTGGACTTCACC  742

seq1  TCAGGTGTGACCTCAGTGAGTGACTGCACACTGGCAGAAAAATCAACACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGACCTCAGTGAGTGACTGCACACTGGCAGAAAAATCAACACT  792

seq1  AGCTTGCTCTTTCTTGAGACCTGTTGGTTGAGTTCTCTTTGCTTTTTCAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTCTTTCTTGAGACCTGTTGGTTGAGTTCTCTTTGCTTTTTCAT  842

seq1  GACCCTTCCTTCCCTAATTGTCCCAGGATGCATTTCACTGCCAATGTTCC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCCTTCCCTAATTGTCCCAGGATGCATTTCACTGCCAATGTTCC  892

seq1  TGCCTCCAATCTATGTCATGTCATATTCTTGAGGTTTCTATCCCAGGGCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAATCTATGTCATGTCATATTCTTGAGGTTTCTATCCCAGGGCC  942

seq1  AAAAGAGGTTACCTGGTAGCCTTGAAGATAATTTCTCCTGTACTTTACCA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTTACCTGGTAGCCTTGAAGATAATTTCTCCTGTACTTTACCA  992

seq1  ATAGAAAGGTACAAGAGTGATGTGAAACAGATTTTCCTAAAACAAAAGCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGGTACAAGAGTGATGTGAAACAGATTTTCCTAAAACAAAAGCC  1042

seq1  AAATGAGATCAATGCTCAGATTAATATCTTTTTTTTCTTTTCTTTTCTCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATCAATGCTCAGATTAATATCTTTTTTTTCTTTTCTTTTCTCA  1092

seq1  GAACCTTGCTTAGTTAGAACAAGAATTC  1114
      ||||||||||||||||||||||||||||
seq2  GAACCTTGCTTAGTTAGAACAAGAATTC  1120