BAC Information

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BAC

Clone NameB6Ng01-330F08
Chromosome16 (Build37)
Map Location 65,798,983 - 65,800,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186
Downstream geneVgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330F08.bB6Ng01-330F08.g
ACCGA117041GA117042
length1,091998
definitionB6Ng01-330F08.b B6Ng01-330F08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactccttcaaagtaatatttgaaaagccaagagtaacttaggaa
gttgctacacatgtaaagacttacactggaatatttattgactaaaaagt
cattgtacgcaagtatttacctcagcctgggcactgtcttataccttgcc
ctttacaaactcgtctaacaagccctcaaaacatatgtataatatattgg
ttaatcacacaacataaacattaaaataaaatatacaaactgaagagtgc
tgttccatgcctcagtgctctttgtagaattaggcagtacaattataagt
acatgcatttgtttttagtttctgaatttttccttcccatctcacctctt
tatatatttttactttaatatgcagcaacattcatttttgtctcattctt
acctaagtgtatgccagcttatttttggaaaactggcaaaatggatcatt
tgatgaatatggagattatacatacaagaaaccagacttcacttagtgaa
acaaaaatttaagacataaggcagcatgaattttgtgcagctatggtcct
atctctgtccagggacagcaacatagcccaggaatgacttctttctgttt
tagtcgtgagctagtttttccattgtacatttattccacaactaataaaa
cagagcagatccactttttttaatgtcctgccaatgaacatactgctaaa
aacaagtatgaaataattctttttcacagagaactagtttttgccatgaa
gtttatccaagttaggccaattatgcttacactggaaagcttcagtttgg
tatgaagtaacatagatgtctctgagaagacttcttgttatttcagaaat
caatacataggtcagggtgatgaggacatgaatttggatccccaggacca
atgtaaatgctcagtggatatagtggtctgatagtaaaggaaactgatac
aggggatcccaaccatatagaaagttagactgccaaatgatgactctgag
tgactcaagatcctgtcttaaataaagtcagagagcattgagaagacact
gacatcactcagactcacatacagtacatacacatgcagca

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttataaatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctaaacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctatagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatggggatagcattgaatctgtagattgcttttggcaagaacaacagtt
tttaatagggctgcttgtaggagcagagatgacaaattatatgcagaagc
ttgaccatcttaccaactgtgagagttgacagctaaacaggcttgatggc
ctttgaggatgggctttcatagctggggtaagctcaacatctcacttacc
ttatgtaaagtgtatagggtaaaatgtccagcctactttcagacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65798983_65800090
seq2: B6Ng01-330F08.b_45_1135

seq1  GAATTCACTCCTTCAAAGTAATATTTGAAAAGCCAAGAGTAACTTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTTCAAAGTAATATTTGAAAAGCCAAGAGTAACTTAGGAA  50

seq1  GTTGCTACACATGTAAAGACTTACACTGGAATATTTATTGACTAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACACATGTAAAGACTTACACTGGAATATTTATTGACTAAAAAGT  100

seq1  CATTGTACGCAAGTATTTACCTCAGCCTGGGCACTGTCTTATACCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACGCAAGTATTTACCTCAGCCTGGGCACTGTCTTATACCTTGCC  150

seq1  CTTTACAAACTCGTCTAACAAGCCCTCAAAACATATGTATAATATATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAACTCGTCTAACAAGCCCTCAAAACATATGTATAATATATTGG  200

seq1  TTAATCACACAACATAAACATTAAAATAAAATATACAAACTGAAGAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACACAACATAAACATTAAAATAAAATATACAAACTGAAGAGTGC  250

seq1  TGTTCCATGCCTCAGTGCTCTTTGTAGAATTAGGCAGTACAATTATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGCCTCAGTGCTCTTTGTAGAATTAGGCAGTACAATTATAAGT  300

seq1  ACATGCATTTGTTTTTAGTTTCTGAATTTTTCCTTCCCATCTCACCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTTGTTTTTAGTTTCTGAATTTTTCCTTCCCATCTCACCTCTT  350

seq1  TATATATTTTTACTTTAATATGCAGCAACATTCATTTTTGTCTCATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTTACTTTAATATGCAGCAACATTCATTTTTGTCTCATTCTT  400

seq1  ACCTAAGTGTATGCCAGCTTATTTTTGGAAAACTGGCAAAATGGATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTGTATGCCAGCTTATTTTTGGAAAACTGGCAAAATGGATCATT  450

seq1  TGATGAATATGGAGATTATACATACAAGAAACCAGACTTCACTTAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATATGGAGATTATACATACAAGAAACCAGACTTCACTTAGTGAA  500

seq1  ACAAAAATTTAAGACATAAGGCAGCATGAATTTTGTGCAGCTATGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTTAAGACATAAGGCAGCATGAATTTTGTGCAGCTATGGTCCT  550

seq1  ATCTCTGTCCAGGGACAGCAACATAGCCCAGGAATGACTTCTTTCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTCCAGGGACAGCAACATAGCCCAGGAATGACTTCTTTCTGTTT  600

seq1  TAGTCGTGAGCTAGTTTTTCCATTGTACATTTATTCCACAACTAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGTGAGCTAGTTTTTCCATTGTACATTTATTCCACAACTAATAAAA  650

seq1  CAGAGCAGATCCACTTTTTTTAATGTCCTGCCAATGAACATACTGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGATCCACTTTTTTTAATGTCCTGCCAATGAACATACTGCTAAA  700

seq1  AACAAGTATGAAATAATTCTTTTTCACAGAGAACTAGTTTTTGCCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTATGAAATAATTCTTTTTCACAGAGAACTAGTTTTTGCCATGAA  750

seq1  GTTTATCCAAGTTAGGCCAATTATGCTTACACTGGAAAGCTTCAGTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCAAGTTAGGCCAATTATGCTTACACTGGAAAGCTTCAGTTTGG  800

seq1  TATGAAGTAACATAGATGTCTCTGAGAAGACTTCTTGTTATTTCAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTAACATAGATGTCTCTGAGAAGACTTCTTGTTATTTCAGAAAT  850

seq1  CAATACATAGGTCAGGGGTGATGAGGACATGAATTTGGATCCCCAGGACC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAATACATAGGTCA-GGGTGATGAGGACATGAATTTGGATCCCCAGGACC  899

seq1  AATGTAAATGCTCAGTGGATATAGTGGTCTGATAGTAAAGGAAACTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATGCTCAGTGGATATAGTGGTCTGATAGTAAAGGAAACTGATA  949

seq1  CAGGGGATCCCAACCATATAGAAAGTTAGACTGCCAAATTGATGAACTCT  1000
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CAGGGGATCCCAACCATATAGAAAGTTAGACTGCCAAA-TGATG-ACTCT  997

seq1  GAGGTTGACTCAAAGATCCTGTCTTTAAATAAAGGTCAAGAGAGCAATTG  1050
      |||  |||||| ||||||||||| ||||||||| ||| ||||||| ||||
seq2  GAG--TGACTC-AAGATCCTGTC-TTAAATAAA-GTC-AGAGAGC-ATTG  1040

seq1  AAGAAGACAACTGACATCAACCTCAGACCTCAACATACAAGTACATACAC  1100
       ||||||| ||||||||||  |||||| ||| |||||| |||||||||||
seq2  -AGAAGAC-ACTGACATCA--CTCAGA-CTC-ACATAC-AGTACATACAC  1083

seq1  ATGCAGCA  1108
      ||||||||
seq2  ATGCAGCA  1091


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